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Lag0028471 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTATAATGTTGAAAATTCTCTTTGTACTACTAATGACTTCTTTGATGTGAAGGAGAATTATAATTCTCAAAATCAAGAAAAGTTCTATGGAGTAGAAAAAGAAAAATGTGATGGATCCTCCGTATGCTTGATGGCTCATTCGGATAATGATTCCAGTGATGATAGTGACGAAAATGAGGTAAATCACAAATCTCTTACTTATGATGAACTTTATGATGCTTTTGAAAGTATGCATCAAGATTTGGAAAAACTTGGTTCAAAATATGTGAAATTATCAAAGAAATATAAGACATTGTCTATTGAGAATAAATCTTTGATAAATGAAAATGCATGTTTGAAAAATGGAACTAATAATGTTTTGTTGCATAATGAGGTTGATAGTGATTGTGATGAGAAAAATGCTAAGGTTAATAGAATTAAATTTCTTGAGAAAGAGAATGAGGATCTCAAATCTTTATCTTGTGAATTGAAACTTGAATTTAATGATTTGAGAAACAAGAATGAGAAAATTGAATCTTTTTCATTAGAATTGAAAGATGAAATTGCTAGCTTGAAAAATAAAATTATTGATTTGGAAACTAGCAATACTTCTTTAGAGAATGATAAACTTGCCTTGATTGACAAGATTAAATTCATTGAATGTGATAGTCATGAGAAAAATAATCTTTTGCATGTGCTTAAAGAAAAAGAATTGTTAGCTAATAAAGAGCTTGGAATTGCAAAAGAGTCCATTAAGAAATTGACTATAGGTGCACAAAATTTGGATAAAATTATTGACATGGGTAAACCGTTAAATGACAAAAGAGGTCTTGGTTATGTTGATGAGAGTGTTACTCCATCAAATTCCAAAACTATTTTTGTTAAAGCATCTTCTAGTATGCCTAGTGACATTTTGCCGAATGTTTTGCTAAAATGTAATGTGCATAAGCATGACATACCAAAATTTGTTCATAAGCATGATGTAGCAAAATGTGTGTCAAATCATTCTCATTCTAAGTCTAATTTAGTTCATAATGCTAGATTTGTGCATAATGCAAAATTTGTGCCTATATGTCATTATTGTGGTATTAAAGGTCATATTAGACCAAATTGCAATAAATTTCTAACATGGGAAACGTACAACCGTTTTATTATGTGTTGGATTTATTCTTCATTGTCTGAAGAGAAAATGGGTGAGATAGAGACACTGCTTCTGAAATTTGGAATTCCTTGAAACGTGCTTATGATTCTAAAACAACAGCTAGAATAATGGGTCTTAAAACTCAGCTCCAATGTATTAAGAAAGATGGTCTTTCGGTTAGTCAATATCTTTCTCAGATTAAGGACATTGCTGATAAGTTTTCTGTAATAGGAGAGCCTTTCTCATATAGAGATCATTTGGTGCATATTTTAGATGGACTTGGTAGTGAATATAACGCTTTTGTAACTTCAATCCAAAATCGGTCTGATAACCCTGCACTTGAGGATGTCTGA ATGTATAATGTTGAAAATTCTCTTTGTACTACTAATGACTTCTTTGATGTGAAGGAGAATTATAATTCTCAAAATCAAGAAAAGTTCTATGGAGTAGAAAAAGAAAAATGTGATGGATCCTCCGTATGCTTGATGGCTCATTCGGATAATGATTCCAGTGATGATAGTGACGAAAATGAGGTAAATCACAAATCTCTTACTTATGATGAACTTTATGATGCTTTTGAAAGTATGCATCAAGATTTGGAAAAACTTGGTTCAAAATATGTGAAATTATCAAAGAAATATAAGACATTGTCTATTGAGAATAAATCTTTGATAAATGAAAATGCATGTTTGAAAAATGGAACTAATAATGTTTTGTTGCATAATGAGGTTGATAGTGATTGTGATGAGAAAAATGCTAAGGTTAATAGAATTAAATTTCTTGAGAAAGAGAATGAGGATCTCAAATCTTTATCTTGTGAATTGAAACTTGAATTTAATGATTTGAGAAACAAGAATGAGAAAATTGAATCTTTTTCATTAGAATTGAAAGATGAAATTGCTAGCTTGAAAAATAAAATTATTGATTTGGAAACTAGCAATACTTCTTTAGAGAATGATAAACTTGCCTTGATTGACAAGATTAAATTCATTGAATGTGATAGTCATGAGAAAAATAATCTTTTGCATGTGCTTAAAGAAAAAGAATTGTTAGCTAATAAAGAGCTTGGAATTGCAAAAGAGTCCATTAAGAAATTGACTATAGGTGCACAAAATTTGGATAAAATTATTGACATGGGTAAACCGTTAAATGACAAAAGAGGTCTTGGTTATGTTGATGAGAGTGTTACTCCATCAAATTCCAAAACTATTTTTGTTAAAGCATCTTCTAGTATGCCTAGTGACATTTTGCCGAATGTTTTGCTAAAATCTAGAATAATGGGTCTTAAAACTCAGCTCCAATGTATTAAGAAAGATGGTCTTTCGGTTAGTCAATATCTTTCTCAGATTAAGGACATTGCTGATAAGTTTTCTGTAATAGGAGAGCCTTTCTCATATAGAGATCATTTGGTGCATATTTTAGATGGACTTGGTAGTGAATATAACGCTTTTGTAACTTCAATCCAAAATCGGTCTGATAACCCTGCACTTGAGGATGTCTGA ATGTATAATGTTGAAAATTCTCTTTGTACTACTAATGACTTCTTTGATGTGAAGGAGAATTATAATTCTCAAAATCAAGAAAAGTTCTATGGAGTAGAAAAAGAAAAATGTGATGGATCCTCCGTATGCTTGATGGCTCATTCGGATAATGATTCCAGTGATGATAGTGACGAAAATGAGGTAAATCACAAATCTCTTACTTATGATGAACTTTATGATGCTTTTGAAAGTATGCATCAAGATTTGGAAAAACTTGGTTCAAAATATGTGAAATTATCAAAGAAATATAAGACATTGTCTATTGAGAATAAATCTTTGATAAATGAAAATGCATGTTTGAAAAATGGAACTAATAATGTTTTGTTGCATAATGAGGTTGATAGTGATTGTGATGAGAAAAATGCTAAGGTTAATAGAATTAAATTTCTTGAGAAAGAGAATGAGGATCTCAAATCTTTATCTTGTGAATTGAAACTTGAATTTAATGATTTGAGAAACAAGAATGAGAAAATTGAATCTTTTTCATTAGAATTGAAAGATGAAATTGCTAGCTTGAAAAATAAAATTATTGATTTGGAAACTAGCAATACTTCTTTAGAGAATGATAAACTTGCCTTGATTGACAAGATTAAATTCATTGAATGTGATAGTCATGAGAAAAATAATCTTTTGCATGTGCTTAAAGAAAAAGAATTGTTAGCTAATAAAGAGCTTGGAATTGCAAAAGAGTCCATTAAGAAATTGACTATAGGTGCACAAAATTTGGATAAAATTATTGACATGGGTAAACCGTTAAATGACAAAAGAGGTCTTGGTTATGTTGATGAGAGTGTTACTCCATCAAATTCCAAAACTATTTTTGTTAAAGCATCTTCTAGTATGCCTAGTGACATTTTGCCGAATGTTTTGCTAAAATCTAGAATAATGGGTCTTAAAACTCAGCTCCAATGTATTAAGAAAGATGGTCTTTCGGTTAGTCAATATCTTTCTCAGATTAAGGACATTGCTGATAAGTTTTCTGTAATAGGAGAGCCTTTCTCATATAGAGATCATTTGGTGCATATTTTAGATGGACTTGGTAGTGAATATAACGCTTTTGTAACTTCAATCCAAAATCGGTCTGATAACCCTGCACTTGAGGATGTCTGA MYNVENSLCTTNDFFDVKENYNSQNQEKFYGVEKEKCDGSSVCLMAHSDNDSSDDSDENEVNHKSLTYDELYDAFESMHQDLEKLGSKYVKLSKKYKTLSIENKSLINENACLKNGTNNVLLHNEVDSDCDEKNAKVNRIKFLEKENEDLKSLSCELKLEFNDLRNKNEKIESFSLELKDEIASLKNKIIDLETSNTSLENDKLALIDKIKFIECDSHEKNNLLHVLKEKELLANKELGIAKESIKKLTIGAQNLDKIIDMGKPLNDKRGLGYVDESVTPSNSKTIFVKASSSMPSDILPNVLLKSRIMGLKTQLQCIKKDGLSVSQYLSQIKDIADKFSVIGEPFSYRDHLVHILDGLGSEYNAFVTSIQNRSDNPALEDV Homology
BLAST of Lag0028471 vs. NCBI nr
Match: XP_031741720.1 (uncharacterized protein LOC116403915 [Cucumis sativus]) HSP 1 Score: 152.1 bits (383), Expect = 9.4e-33 Identity = 112/269 (41.64%), Postives = 144/269 (53.53%), Query Frame = 0
BLAST of Lag0028471 vs. NCBI nr
Match: KAA0046182.1 (zf-CCHC domain-containing protein/UBN2 domain-containing protein [Cucumis melo var. makuwa] >TYK00208.1 zf-CCHC domain-containing protein/UBN2 domain-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 134.8 bits (338), Expect = 1.6e-27 Identity = 101/263 (38.40%), Postives = 136/263 (51.71%), Query Frame = 0
BLAST of Lag0028471 vs. NCBI nr
Match: XP_022156978.1 (uncharacterized protein LOC111023806 [Momordica charantia]) HSP 1 Score: 127.1 bits (318), Expect = 3.3e-25 Identity = 98/276 (35.51%), Postives = 126/276 (45.65%), Query Frame = 0
BLAST of Lag0028471 vs. NCBI nr
Match: XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia]) HSP 1 Score: 126.7 bits (317), Expect = 4.2e-25 Identity = 58/77 (75.32%), Postives = 71/77 (92.21%), Query Frame = 0
BLAST of Lag0028471 vs. NCBI nr
Match: XP_038891713.1 (uncharacterized protein LOC120081111 [Benincasa hispida]) HSP 1 Score: 117.5 bits (293), Expect = 2.6e-22 Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 0
BLAST of Lag0028471 vs. ExPASy TrEMBL
Match: A0A5A7TRZ7 (Zf-CCHC domain-containing protein/UBN2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1333G00310 PE=4 SV=1) HSP 1 Score: 134.8 bits (338), Expect = 7.6e-28 Identity = 101/263 (38.40%), Postives = 136/263 (51.71%), Query Frame = 0
BLAST of Lag0028471 vs. ExPASy TrEMBL
Match: A0A6J1DS74 (uncharacterized protein LOC111023806 OS=Momordica charantia OX=3673 GN=LOC111023806 PE=4 SV=1) HSP 1 Score: 127.1 bits (318), Expect = 1.6e-25 Identity = 98/276 (35.51%), Postives = 126/276 (45.65%), Query Frame = 0
BLAST of Lag0028471 vs. ExPASy TrEMBL
Match: A0A6J1DQX7 (uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022315 PE=4 SV=1) HSP 1 Score: 126.7 bits (317), Expect = 2.1e-25 Identity = 58/77 (75.32%), Postives = 71/77 (92.21%), Query Frame = 0
BLAST of Lag0028471 vs. ExPASy TrEMBL
Match: A0A5A7U923 (Zf-CCHC domain-containing protein/UBN2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold234G00640 PE=4 SV=1) HSP 1 Score: 107.5 bits (267), Expect = 1.3e-19 Identity = 72/165 (43.64%), Postives = 104/165 (63.03%), Query Frame = 0
BLAST of Lag0028471 vs. ExPASy TrEMBL
Match: A0A5C7IHH0 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_003685 PE=4 SV=1) HSP 1 Score: 97.4 bits (241), Expect = 1.3e-16 Identity = 58/151 (38.41%), Postives = 91/151 (60.26%), Query Frame = 0
BLAST of Lag0028471 vs. TAIR 10
Match: AT5G48050.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 44.3 bits (103), Expect = 2.6e-04 Identity = 20/77 (25.97%), Postives = 45/77 (58.44%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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