Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGATGGAAGGGATCCACCGTCGCCCGAACAAGGGCGGCAGGAGCCTGGAAATCATAGACGTGAGGAAACTAAGTGAAAACAAGATGTCCTTGGACCAAACACGTGAAAACAAGATGTCCTTGGACCAATCACGCCCACGAGCCATCTCGAACCGATCACCGGTGAAACGACATGTGATCAAGTCATCGGAATCGTCGAAAAGCTCAGGAAATTCATGGTGGAAGAACTCGGAAATGAAGAGACGACAACGCGTCGCAAAGTACAAGTATTATACAGTGGAAGGGAAGGTAAAAGATTCCCTAAAGAAAGGGATCAACTGGTTCAAGATCAGGTGTTGCAGAATCATATCTGGGTTTTGA mRNA sequence
ATGTCGATGGAAGGGATCCACCGTCGCCCGAACAAGGGCGGCAGGAGCCTGGAAATCATAGACGTGAGGAAACTAAGTGAAAACAAGATGTCCTTGGACCAAACACGTGAAAACAAGATGTCCTTGGACCAATCACGCCCACGAGCCATCTCGAACCGATCACCGGTGAAACGACATGTGATCAAGTCATCGGAATCGTCGAAAAGCTCAGGAAATTCATGGTGGAAGAACTCGGAAATGAAGAGACGACAACGCGTCGCAAAGTACAAGTATTATACAGTGGAAGGGAAGGTAAAAGATTCCCTAAAGAAAGGGATCAACTGGTTCAAGATCAGGTGTTGCAGAATCATATCTGGGTTTTGA Coding sequence (CDS)
ATGTCGATGGAAGGGATCCACCGTCGCCCGAACAAGGGCGGCAGGAGCCTGGAAATCATAGACGTGAGGAAACTAAGTGAAAACAAGATGTCCTTGGACCAAACACGTGAAAACAAGATGTCCTTGGACCAATCACGCCCACGAGCCATCTCGAACCGATCACCGGTGAAACGACATGTGATCAAGTCATCGGAATCGTCGAAAAGCTCAGGAAATTCATGGTGGAAGAACTCGGAAATGAAGAGACGACAACGCGTCGCAAAGTACAAGTATTATACAGTGGAAGGGAAGGTAAAAGATTCCCTAAAGAAAGGGATCAACTGGTTCAAGATCAGGTGTTGCAGAATCATATCTGGGTTTTGA Protein sequence
MSMEGIHRRPNKGGRSLEIIDVRKLSENKMSLDQTRENKMSLDQSRPRAISNRSPVKRHVIKSSESSKSSGNSWWKNSEMKRRQRVAKYKYYTVEGKVKDSLKKGINWFKIRCCRIISGF
Homology
BLAST of Lag0028463 vs. NCBI nr
Match:
XP_022151002.1 (uncharacterized protein LOC111019023 [Momordica charantia])
HSP 1 Score: 146.0 bits (367), Expect = 2.1e-31
Identity = 84/120 (70.00%), Postives = 90/120 (75.00%), Query Frame = 0
Query: 3 MEGIHRRPNKGGRSLEIIDVRKLSENKMSLDQTRENKMSLDQSRPRAISNRSP-VKRHVI 62 MEGIHRRP KGGRSLEIIDVR LS ENK+SL QSR RA + SP KR I Sbjct: 1 MEGIHRRPKKGGRSLEIIDVRNLS----------ENKLSLSQSRSRAAVDPSPSTKRQAI 60 Query: 63 KS-SESSKSSGNSWWKNSEMKRRQRVAKYKYYTVEGKVKDSLKKGINWFKIRCCRIISGF 121 K SESSKSS SWWKN EMKRR+RVAKYK YTVEGKVK+S+KKGI WFK RC RI+SGF Sbjct: 61 KKPSESSKSSVKSWWKNPEMKRRRRVAKYKLYTVEGKVKNSIKKGIKWFKTRCSRIMSGF 110
BLAST of Lag0028463 vs. NCBI nr
Match:
KAA0032381.1 (hypothetical protein E6C27_scaffold219G002520 [Cucumis melo var. makuwa] >TYJ96369.1 hypothetical protein E5676_scaffold1159G00320 [Cucumis melo var. makuwa])
HSP 1 Score: 137.9 bits (346), Expect = 5.8e-29
Identity = 78/123 (63.41%), Postives = 95/123 (77.24%), Query Frame = 0
Query: 1 MSMEGIHRRPNKGGRSLEIIDVRKLSENKMSLDQTRENKMSLDQS--RPRAISNRSPVKR 60 M+ME +HRRPNKG R+L+IIDVRKLSENKM L+Q+R + ++D S +PRAI Sbjct: 1 MTMERVHRRPNKGDRNLKIIDVRKLSENKMHLNQSRRHS-TIDPSSMKPRAIKT------ 60 Query: 61 HVIKSSESSKSSG-NSWWKNSEMKRRQRVAKYKYYTVEGKVKDSLKKGINWFKIRCCRII 120 +SESSK+S WWKNSEMKRR+RVAKYK YTVEG+VK+S++KGINWFK RC RII Sbjct: 61 ----TSESSKASTVKLWWKNSEMKRRRRVAKYKLYTVEGRVKESIRKGINWFKCRCTRII 112
BLAST of Lag0028463 vs. NCBI nr
Match:
KAG7017168.1 (hypothetical protein SDJN02_22280, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 136.0 bits (341), Expect = 2.2e-28
Identity = 75/120 (62.50%), Postives = 92/120 (76.67%), Query Frame = 0
Query: 3 MEGIHRRPNK-GGRSLEIIDVRKLSENKMSLDQTRENKMSLDQSRPRAISNRSPVKRHVI 62 MEG+HRRP+K GGRSLE+IDVRKLSEN++ L Q+R RP A+ + S VK V+ Sbjct: 1 MEGVHRRPSKGGGRSLEVIDVRKLSENQVHLSQSR---------RPAAM-DPSAVKPRVV 60 Query: 63 KSSESSK-SSGNSWWKNSEMKRRQRVAKYKYYTVEGKVKDSLKKGINWFKIRCCRIISGF 121 K+ E S+ SGNSWWKN EMKR++RVAKYK YTVEG+VKDS+KKG+ WFK RC RI+ GF Sbjct: 61 KTGEGSRGGSGNSWWKNPEMKRQRRVAKYKLYTVEGRVKDSIKKGMRWFKSRCSRIVYGF 110
BLAST of Lag0028463 vs. NCBI nr
Match:
KAA0033960.1 (DUF3511 domain protein [Cucumis melo var. makuwa] >TYK02584.1 DUF3511 domain protein [Cucumis melo var. makuwa])
HSP 1 Score: 127.1 bits (318), Expect = 1.0e-25
Identity = 71/118 (60.17%), Postives = 82/118 (69.49%), Query Frame = 0
Query: 3 MEGIHRRPNKGGRSLEIIDVRKLSENKMSLDQTRENKMSLDQSRPRAISNRSPVKRHVIK 62 MEG+H NKGGRSLE++DVRKLS ENKM L+QS+ R + + S VKR+V K Sbjct: 1 MEGLHHHQNKGGRSLEVMDVRKLS----------ENKMYLNQSQRRTVVDPSFVKRYVTK 60 Query: 63 SSESSKSSGNSWWKNSEMKRRQRVAKYKYYTVEGKVKDSLKKGINWFKIRCCRIISGF 121 + E SK SWWK EMKRRQRVAKYK Y VEGKVK S+KKG W K +C RIISGF Sbjct: 61 TWEPSKMK-KSWWKKPEMKRRQRVAKYKLYAVEGKVKSSIKKGFRWIKTKCSRIISGF 107
BLAST of Lag0028463 vs. NCBI nr
Match:
KGN56136.1 (hypothetical protein Csa_009524 [Cucumis sativus])
HSP 1 Score: 125.9 bits (315), Expect = 2.3e-25
Identity = 71/119 (59.66%), Postives = 84/119 (70.59%), Query Frame = 0
Query: 3 MEGIHRRPNKGGRSLEIIDVRKLSENKMSLDQTRENKMSLDQSRPRAISNRSPVKRHVIK 62 MEG+H PNKGGRSLE+IDVRKLS NK+ L+QS+ R + + S VK++V K Sbjct: 1 MEGLHHHPNKGGRSLEVIDVRKLS----------VNKVYLNQSQRRTVVDPSFVKQYVTK 60 Query: 63 SSESSKS-SGNSWWKNSEMKRRQRVAKYKYYTVEGKVKDSLKKGINWFKIRCCRIISGF 121 +SE SKS WWK EM+RRQRVAKYK Y VEGKVK S+KKGI W K +C RIISGF Sbjct: 61 TSEPSKSCMKKPWWKKPEMRRRQRVAKYKLYGVEGKVKRSIKKGIRWIKTKCSRIISGF 109
The following BLAST results are available for this feature:
Match Name E-value Identity Description
XP_022151002.1 2.1e-31 70.00 uncharacterized protein LOC111019023 [Momordica charantia] [more]
KAA0032381.1 5.8e-29 63.41 hypothetical protein E6C27_scaffold219G002520 [Cucumis melo var. makuwa] >TYJ963... [more]
KAG7017168.1 2.2e-28 62.50 hypothetical protein SDJN02_22280, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAA0033960.1 1.0e-25 60.17 DUF3511 domain protein [Cucumis melo var. makuwa] >TYK02584.1 DUF3511 domain pro... [more]
KGN56136.1 2.3e-25 59.66 hypothetical protein Csa_009524 [Cucumis sativus] [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
A T G T C G A T G G A A G G G A T C C A C C G T C G C C C G A A C A A G G G C G G C A G G A G C C T G G A A A T C A T A G A C G T G A G G A A A C T A A G T G A A A A C A A G A T G T C C T T G G A C C A A A C A C G T G A A A A C A A G A T G T C C T T G G A C C A A T C A C G C C C A C G A G C C A T C T C G A A C C G A T C A C C G G T G A A A C G A C A T G T G A T C A A G T C A T C G G A A T C G T C G A A A A G C T C A G G A A A T T C A T G G T G G A A G A A C T C G G A A A T G A A G A G A C G A C A A C G C G T C G C A A A G T A C A A G T A T T A T A C A G T G G A A G G G A A G G T A A A A G A T T C C C T A A A G A A A G G G A T C A A C T G G T T C A A G A T C A G G T G T T G C A G A A T C A T A T C T G G G T T T T G A 50 100 150 200 250 300 350 Expect = 5.9E-20 / Score = 70.8 Score = Score = Score = Score = Score = Sequence PF12023 mobidb-lite mobidb-lite mobidb-lite PTHR33193:SF13 PTHR33193
IPR Term IPR Description Source Source Term Source Description Alignment
IPR021899 Protein of unknown function DUF3511 PFAM PF12023 DUF3511 coord: 75..119 e-value: 5.9E-20 score: 70.8
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 28..43
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..20
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 28..77
None No IPR available PANTHER PTHR33193:SF13 DOMAIN PROTEIN, PUTATIVE (DUF3511)-RELATED coord: 4..120
None No IPR available PANTHER PTHR33193 DOMAIN PROTEIN, PUTATIVE (DUF3511)-RELATED coord: 4..120
Relationships
The following mRNA feature(s) are a part of this gene: