Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCACGCTACTTTTTCTTCAAGCCAAACTATAACCTCATCTGCAAACCATGTGTTTAGTAGTCCACTGCTAAATCAACTTTTAAATCAAATCACTTCTATTAAGCTTGACAGAGGAAATTATTTGCTTTGGAAAAATCTTGCTCTCCCCATTCTTAGAAGTTATCGCTTGGAGGGTCATCTGTCCGGTGAGAAGGCCTGTCCACCCAAGTTTCTATCAACGGCAACCGCTGCAGTCACAAATGTTGTCGATTCAAGCTCCGAAGCATTGGATTTCGAGACTATTGATGGCGGCTCTAGCTCTTCGTCTACCATGATCTCTACTGTTAATCCCAAGTATGAAAGTTGGCTTGTTATAGATCAACTTCTTCTTGGTTGGTTGTACAATTCTATGACTCCTGAAATTGCAACTCAGGTAATGGGATATGAAAATTCAAAGGATCTTTGGGCTGCTATTCAAGAACTTTTTGGCGTTCAGTCTCGGGCAGAGGAAGATTACCTTCGACAGGTTTTTCAGCAAACTCGTAAGTGTTCTCTTAAAATGGTTGATTATTTGAGTGTCATGAAAACTCATGCAGATAACTTGGGGCAAGCTGGAAGTCCGGTTTCAAACCGTTCATTGATTTCCCAAGTCTTGTTGGGGTTAGATGAGGAATACAATCCAGTTGTGGCTATGATCCAGGGACGAGTGAACATTTCATGGTCTGAAATACAGGCAGAGTTGCTAGTTTTTTAG
mRNA sequence
ATGGCTCACGCTACTTTTTCTTCAAGCCAAACTATAACCTCATCTGCAAACCATGTGTTTAGTAGTCCACTGCTAAATCAACTTTTAAATCAAATCACTTCTATTAAGCTTGACAGAGGAAATTATTTGCTTTGGAAAAATCTTGCTCTCCCCATTCTTAGAAGTTATCGCTTGGAGGGTCATCTGTCCGGTGAGAAGGCCTGTCCACCCAAGTTTCTATCAACGGCAACCGCTGCAGTCACAAATGTTGTCGATTCAAGCTCCGAAGCATTGGATTTCGAGACTATTGATGGCGGCTCTAGCTCTTCGTCTACCATGATCTCTACTGTTAATCCCAAGTATGAAAGTTGGCTTGTTATAGATCAACTTCTTCTTGGTTGGTTGTACAATTCTATGACTCCTGAAATTGCAACTCAGGTAATGGGATATGAAAATTCAAAGGATCTTTGGGCTGCTATTCAAGAACTTTTTGGCGTTCAGTCTCGGGCAGAGGAAGATTACCTTCGACAGGTTTTTCAGCAAACTCGTAAGTGTTCTCTTAAAATGGTTGATTATTTGAGTGTCATGAAAACTCATGCAGATAACTTGGGGCAAGCTGGAAGTCCGGTTTCAAACCGTTCATTGATTTCCCAAGTCTTGTTGGGGTTAGATGAGGAATACAATCCAGTTGTGGCTATGATCCAGGGACGAGTGAACATTTCATGGTCTGAAATACAGGCAGAGTTGCTAGTTTTTTAG
Coding sequence (CDS)
ATGGCTCACGCTACTTTTTCTTCAAGCCAAACTATAACCTCATCTGCAAACCATGTGTTTAGTAGTCCACTGCTAAATCAACTTTTAAATCAAATCACTTCTATTAAGCTTGACAGAGGAAATTATTTGCTTTGGAAAAATCTTGCTCTCCCCATTCTTAGAAGTTATCGCTTGGAGGGTCATCTGTCCGGTGAGAAGGCCTGTCCACCCAAGTTTCTATCAACGGCAACCGCTGCAGTCACAAATGTTGTCGATTCAAGCTCCGAAGCATTGGATTTCGAGACTATTGATGGCGGCTCTAGCTCTTCGTCTACCATGATCTCTACTGTTAATCCCAAGTATGAAAGTTGGCTTGTTATAGATCAACTTCTTCTTGGTTGGTTGTACAATTCTATGACTCCTGAAATTGCAACTCAGGTAATGGGATATGAAAATTCAAAGGATCTTTGGGCTGCTATTCAAGAACTTTTTGGCGTTCAGTCTCGGGCAGAGGAAGATTACCTTCGACAGGTTTTTCAGCAAACTCGTAAGTGTTCTCTTAAAATGGTTGATTATTTGAGTGTCATGAAAACTCATGCAGATAACTTGGGGCAAGCTGGAAGTCCGGTTTCAAACCGTTCATTGATTTCCCAAGTCTTGTTGGGGTTAGATGAGGAATACAATCCAGTTGTGGCTATGATCCAGGGACGAGTGAACATTTCATGGTCTGAAATACAGGCAGAGTTGCTAGTTTTTTAG
Protein sequence
MAHATFSSSQTITSSANHVFSSPLLNQLLNQITSIKLDRGNYLLWKNLALPILRSYRLEGHLSGEKACPPKFLSTATAAVTNVVDSSSEALDFETIDGGSSSSSTMISTVNPKYESWLVIDQLLLGWLYNSMTPEIATQVMGYENSKDLWAAIQELFGVQSRAEEDYLRQVFQQTRKCSLKMVDYLSVMKTHADNLGQAGSPVSNRSLISQVLLGLDEEYNPVVAMIQGRVNISWSEIQAELLVF
Homology
BLAST of Lag0028444 vs. NCBI nr
Match:
XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])
HSP 1 Score: 278.5 bits (711), Expect = 5.6e-71
Identity = 141/227 (62.11%), Postives = 176/227 (77.53%), Query Frame = 0
Query: 19 VFSSPLLNQLLNQITSIKLDRGNYLLWKNLALPILRSYRLEGHLSGEKACPPKFLSTATA 78
VF+SP LNQLLNQITSIK+DRGN+LLW+NLALPILRSY+L +L+G+K CPP L T
Sbjct: 21 VFTSPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDYLTGDKPCPPTHL-VPTD 80
Query: 79 AVTNVVDSSSEALDFETIDGGSSSSSTMISTVNPKYESWLVIDQLLLGWLYNSMTPEIAT 138
TN I+G +SS S+ T+NP YE+W+V+D+LLLGWLYNSM ++A
Sbjct: 81 TPTN-------------IEGSTSSQSS--PTLNPTYEAWIVVDKLLLGWLYNSMAADVAM 140
Query: 139 QVMGYENSKDLWAAIQELFGVQSRAEEDYLRQVFQQTRKCSLKMVDYLSVMKTHADNLGQ 198
QVMG+ S++LW A+QELFGVQSRAE DYL+QVFQQT K SL+M++YL +MK+HADNL
Sbjct: 141 QVMGFSTSRELWTAVQELFGVQSRAEVDYLKQVFQQTCKGSLQMIEYLKLMKSHADNLAL 200
Query: 199 AGSPVSNRSLISQVLLGLDEEYNPVVAMIQGRVNISWSEIQAELLVF 246
AGS VS R L+SQVL GLDEEYNP+V +QG+VN+SWSE+ AELL +
Sbjct: 201 AGSSVSVRDLVSQVLTGLDEEYNPIVVAVQGKVNLSWSEMHAELLTY 231
BLAST of Lag0028444 vs. NCBI nr
Match:
XP_038902487.1 (uncharacterized protein LOC120089143 [Benincasa hispida])
HSP 1 Score: 263.1 bits (671), Expect = 2.4e-66
Identity = 143/223 (64.13%), Postives = 166/223 (74.44%), Query Frame = 0
Query: 33 TSIKLDRGNYLLWKNLALPILRSYRLEGHLSGEKACPPKFLSTATAAVTNVVDSSSEA-- 92
T+IKLD+ NYLLW+NLALPILRSYRLEGHL+GE CPP+F S AT T V EA
Sbjct: 43 TTIKLDQENYLLWRNLALPILRSYRLEGHLTGEDPCPPRF-SVATDQSTATVPPGDEAGL 102
Query: 93 ------LDFETIDGG--SSSSSTMISTVNPKYESWLVIDQLLLGWLYNSMTPEIATQVMG 152
+ T G ++S+S+ + VNP YES V+DQLLLGWLYN MT E+A QVMG
Sbjct: 103 GGQYSGIASLTPQQGITTASNSSPVLQVNPFYESRTVVDQLLLGWLYNFMTAEVAMQVMG 162
Query: 153 YENSKDLWAAIQELFGVQSRAEEDYLRQVFQQTRKCSLKMVDYLSVMKTHADNLGQAGSP 212
YEN K LWAAIQELFG+QSRA EDYLRQVFQQT K ++KM +YL VMKTH+DNLG GSP
Sbjct: 163 YENYKYLWAAIQELFGLQSRAGEDYLRQVFQQTCKGAMKMPEYLRVMKTHSDNLGLTGSP 222
Query: 213 VSNRSLISQVLLGLDEEYNPVVAMIQGRVNISWSEIQAELLVF 246
V R+L+SQVLLGLDEE+NP VA IQGR ISW+ +Q ELL F
Sbjct: 223 VPTRALVSQVLLGLDEEFNPFVATIQGRSEISWTNMQTELLAF 264
BLAST of Lag0028444 vs. NCBI nr
Match:
KAA0026100.1 (uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa])
HSP 1 Score: 260.0 bits (663), Expect = 2.1e-65
Identity = 139/245 (56.73%), Postives = 183/245 (74.69%), Query Frame = 0
Query: 1 MAHATFSSSQTITSSANHVFSSPLLNQLLNQITSIKLDRGNYLLWKNLALPILRSYRLEG 60
MA+A +++ SSA FS+P LNQ+LNQ+ ++KLDR NYLLWK LALPIL+ Y+LEG
Sbjct: 1 MANAQPTAAPPSLSSAG--FSNPPLNQILNQLATVKLDRKNYLLWKTLALPILKGYKLEG 60
Query: 61 HLSGEKACPPKFLSTATAAVTNVVDSSSEALDFETIDGGSSSSSTMISTVNPKYESWLVI 120
HL+GE CP F+ +A+++ T V + ++A TI G SSS + I VN +E W+
Sbjct: 61 HLTGETPCPSHFVLSASSSNTTVTEEGADA----TI-GASSSITPRI--VNSLFEQWVTT 120
Query: 121 DQLLLGWLYNSMTPEIATQVMGYENSKDLWAAIQELFGVQSRAEEDYLRQVFQQTRKCSL 180
D LLLGWLYNSMTP++A Q+MG+ N +DLW A Q+ FGVQSRAEED+LRQ+ Q TRK +
Sbjct: 121 DLLLLGWLYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNT 180
Query: 181 KMVDYLSVMKTHADNLGQAGSPVSNRSLISQVLLGLDEEYNPVVAMIQGRVNISWSEIQA 240
KM +YL VMKT+ DNLGQ GSPV R+LISQVLLGLDE YN V+ +IQG+ +ISW ++Q+
Sbjct: 181 KMEEYLLVMKTNVDNLGQVGSPVPRRALISQVLLGLDEVYNLVIVVIQGKPDISWLDMQS 236
Query: 241 ELLVF 246
+LL+F
Sbjct: 241 KLLIF 236
BLAST of Lag0028444 vs. NCBI nr
Match:
XP_022148963.1 (uncharacterized protein LOC111017501 [Momordica charantia])
HSP 1 Score: 230.3 bits (586), Expect = 1.7e-56
Identity = 115/146 (78.77%), Postives = 125/146 (85.62%), Query Frame = 0
Query: 96 IDGGSSSSSTMISTVNPKYESWLVIDQLLLGWLYNSMTPEIATQVMGYENSKDLWAAIQE 155
I SSSS + +NP YESW+ DQLLLGWLYNSMTPE+ATQVMGYEN+ DLWAAIQE
Sbjct: 17 ISAPSSSSIATEAAINPLYESWVTTDQLLLGWLYNSMTPEVATQVMGYENACDLWAAIQE 76
Query: 156 LFGVQSRAEEDYLRQVFQQTRKCSLKMVDYLSVMKTHADNLGQAGSPVSNRSLISQVLLG 215
LFGVQS+AEEDYLRQVFQQTRK SLKM D+L VMK+HADNLGQAGSPV RSLISQVLLG
Sbjct: 77 LFGVQSQAEEDYLRQVFQQTRKGSLKMTDFLRVMKSHADNLGQAGSPVPTRSLISQVLLG 136
Query: 216 LDEEYNPVVAMIQGRVNISWSEIQAE 242
LDEEYNPVVA IQG+ ISW E+QAE
Sbjct: 137 LDEEYNPVVATIQGKRGISWPEMQAE 162
BLAST of Lag0028444 vs. NCBI nr
Match:
KAA0067279.1 (uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa])
HSP 1 Score: 219.9 bits (559), Expect = 2.4e-53
Identity = 108/200 (54.00%), Postives = 145/200 (72.50%), Query Frame = 0
Query: 11 TITSSANHVFSSPLLNQLLNQITSIKLDRGNYLLWKNLALPILRSYRLEGHLSGEKACPP 70
++T++ F++PLLNQ+LNQ+T+IKLDRGNYLLWK LALPIL+SY+L HL GE C P
Sbjct: 8 SVTATPTTSFTNPLLNQILNQLTTIKLDRGNYLLWKTLALPILKSYKLNSHLFGESPCLP 67
Query: 71 KFLSTATAAVTNVVDSSSEALDFETIDGGSSSSSTMISTVNPKYESWLVIDQLLLGWLYN 130
K + T ++V+++ E +SSSST + TVNPKYE W+ D LLLGWLYN
Sbjct: 68 KIIMLTTQPNESIVENAGEP------SQETSSSSTAVVTVNPKYERWITTDLLLLGWLYN 127
Query: 131 SMTPEIATQVMGYENSKDLWAAIQELFGVQSRAEEDYLRQVFQQTRKCSLKMVDYLSVMK 190
SMTPE+ Q+MG+ N+KDLW A Q+LFG+QSRA+ED+L Q FQ T+K +L M +YL MK
Sbjct: 128 SMTPEVTIQLMGFTNAKDLWEATQDLFGIQSRAKEDFLHQTFQTTKKGNLNMEEYLRTMK 187
Query: 191 THADNLGQAGSPVSNRSLIS 211
+ +NLGQA S V + +++S
Sbjct: 188 NNVNNLGQADSLVPSGAIVS 201
BLAST of Lag0028444 vs. ExPASy TrEMBL
Match:
A0A6J1DCW4 (uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019598 PE=4 SV=1)
HSP 1 Score: 278.5 bits (711), Expect = 2.7e-71
Identity = 141/227 (62.11%), Postives = 176/227 (77.53%), Query Frame = 0
Query: 19 VFSSPLLNQLLNQITSIKLDRGNYLLWKNLALPILRSYRLEGHLSGEKACPPKFLSTATA 78
VF+SP LNQLLNQITSIK+DRGN+LLW+NLALPILRSY+L +L+G+K CPP L T
Sbjct: 21 VFTSPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDYLTGDKPCPPTHL-VPTD 80
Query: 79 AVTNVVDSSSEALDFETIDGGSSSSSTMISTVNPKYESWLVIDQLLLGWLYNSMTPEIAT 138
TN I+G +SS S+ T+NP YE+W+V+D+LLLGWLYNSM ++A
Sbjct: 81 TPTN-------------IEGSTSSQSS--PTLNPTYEAWIVVDKLLLGWLYNSMAADVAM 140
Query: 139 QVMGYENSKDLWAAIQELFGVQSRAEEDYLRQVFQQTRKCSLKMVDYLSVMKTHADNLGQ 198
QVMG+ S++LW A+QELFGVQSRAE DYL+QVFQQT K SL+M++YL +MK+HADNL
Sbjct: 141 QVMGFSTSRELWTAVQELFGVQSRAEVDYLKQVFQQTCKGSLQMIEYLKLMKSHADNLAL 200
Query: 199 AGSPVSNRSLISQVLLGLDEEYNPVVAMIQGRVNISWSEIQAELLVF 246
AGS VS R L+SQVL GLDEEYNP+V +QG+VN+SWSE+ AELL +
Sbjct: 201 AGSSVSVRDLVSQVLTGLDEEYNPIVVAVQGKVNLSWSEMHAELLTY 231
BLAST of Lag0028444 vs. ExPASy TrEMBL
Match:
A0A5A7SIT7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00360 PE=4 SV=1)
HSP 1 Score: 260.0 bits (663), Expect = 1.0e-65
Identity = 139/245 (56.73%), Postives = 183/245 (74.69%), Query Frame = 0
Query: 1 MAHATFSSSQTITSSANHVFSSPLLNQLLNQITSIKLDRGNYLLWKNLALPILRSYRLEG 60
MA+A +++ SSA FS+P LNQ+LNQ+ ++KLDR NYLLWK LALPIL+ Y+LEG
Sbjct: 1 MANAQPTAAPPSLSSAG--FSNPPLNQILNQLATVKLDRKNYLLWKTLALPILKGYKLEG 60
Query: 61 HLSGEKACPPKFLSTATAAVTNVVDSSSEALDFETIDGGSSSSSTMISTVNPKYESWLVI 120
HL+GE CP F+ +A+++ T V + ++A TI G SSS + I VN +E W+
Sbjct: 61 HLTGETPCPSHFVLSASSSNTTVTEEGADA----TI-GASSSITPRI--VNSLFEQWVTT 120
Query: 121 DQLLLGWLYNSMTPEIATQVMGYENSKDLWAAIQELFGVQSRAEEDYLRQVFQQTRKCSL 180
D LLLGWLYNSMTP++A Q+MG+ N +DLW A Q+ FGVQSRAEED+LRQ+ Q TRK +
Sbjct: 121 DLLLLGWLYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNT 180
Query: 181 KMVDYLSVMKTHADNLGQAGSPVSNRSLISQVLLGLDEEYNPVVAMIQGRVNISWSEIQA 240
KM +YL VMKT+ DNLGQ GSPV R+LISQVLLGLDE YN V+ +IQG+ +ISW ++Q+
Sbjct: 181 KMEEYLLVMKTNVDNLGQVGSPVPRRALISQVLLGLDEVYNLVIVVIQGKPDISWLDMQS 236
Query: 241 ELLVF 246
+LL+F
Sbjct: 241 KLLIF 236
BLAST of Lag0028444 vs. ExPASy TrEMBL
Match:
A0A6J1D5J0 (uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017501 PE=4 SV=1)
HSP 1 Score: 230.3 bits (586), Expect = 8.5e-57
Identity = 115/146 (78.77%), Postives = 125/146 (85.62%), Query Frame = 0
Query: 96 IDGGSSSSSTMISTVNPKYESWLVIDQLLLGWLYNSMTPEIATQVMGYENSKDLWAAIQE 155
I SSSS + +NP YESW+ DQLLLGWLYNSMTPE+ATQVMGYEN+ DLWAAIQE
Sbjct: 17 ISAPSSSSIATEAAINPLYESWVTTDQLLLGWLYNSMTPEVATQVMGYENACDLWAAIQE 76
Query: 156 LFGVQSRAEEDYLRQVFQQTRKCSLKMVDYLSVMKTHADNLGQAGSPVSNRSLISQVLLG 215
LFGVQS+AEEDYLRQVFQQTRK SLKM D+L VMK+HADNLGQAGSPV RSLISQVLLG
Sbjct: 77 LFGVQSQAEEDYLRQVFQQTRKGSLKMTDFLRVMKSHADNLGQAGSPVPTRSLISQVLLG 136
Query: 216 LDEEYNPVVAMIQGRVNISWSEIQAE 242
LDEEYNPVVA IQG+ ISW E+QAE
Sbjct: 137 LDEEYNPVVATIQGKRGISWPEMQAE 162
BLAST of Lag0028444 vs. ExPASy TrEMBL
Match:
A0A5A7VPY0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G001000 PE=4 SV=1)
HSP 1 Score: 219.9 bits (559), Expect = 1.1e-53
Identity = 108/200 (54.00%), Postives = 145/200 (72.50%), Query Frame = 0
Query: 11 TITSSANHVFSSPLLNQLLNQITSIKLDRGNYLLWKNLALPILRSYRLEGHLSGEKACPP 70
++T++ F++PLLNQ+LNQ+T+IKLDRGNYLLWK LALPIL+SY+L HL GE C P
Sbjct: 8 SVTATPTTSFTNPLLNQILNQLTTIKLDRGNYLLWKTLALPILKSYKLNSHLFGESPCLP 67
Query: 71 KFLSTATAAVTNVVDSSSEALDFETIDGGSSSSSTMISTVNPKYESWLVIDQLLLGWLYN 130
K + T ++V+++ E +SSSST + TVNPKYE W+ D LLLGWLYN
Sbjct: 68 KIIMLTTQPNESIVENAGEP------SQETSSSSTAVVTVNPKYERWITTDLLLLGWLYN 127
Query: 131 SMTPEIATQVMGYENSKDLWAAIQELFGVQSRAEEDYLRQVFQQTRKCSLKMVDYLSVMK 190
SMTPE+ Q+MG+ N+KDLW A Q+LFG+QSRA+ED+L Q FQ T+K +L M +YL MK
Sbjct: 128 SMTPEVTIQLMGFTNAKDLWEATQDLFGIQSRAKEDFLHQTFQTTKKGNLNMEEYLRTMK 187
Query: 191 THADNLGQAGSPVSNRSLIS 211
+ +NLGQA S V + +++S
Sbjct: 188 NNVNNLGQADSLVPSGAIVS 201
BLAST of Lag0028444 vs. ExPASy TrEMBL
Match:
A0A5D3BCH9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1970G00140 PE=4 SV=1)
HSP 1 Score: 218.4 bits (555), Expect = 3.3e-53
Identity = 119/211 (56.40%), Postives = 154/211 (72.99%), Query Frame = 0
Query: 1 MAHATFSSSQTITSSANHVFSSPLLNQLLNQITSIKLDRGNYLLWKNLALPILRSYRLEG 60
MA+A +++ SSA FS+P LNQ+LNQ+ ++KLDR NYLLWK LALPIL+ Y+LEG
Sbjct: 1 MANAQPTAAPPSLSSAG--FSNPPLNQILNQLATVKLDRKNYLLWKTLALPILKGYKLEG 60
Query: 61 HLSGEKACPPKFLSTATAAVTNVVDSSSEALDFETIDGGSSSSSTMISTVNPKYESWLVI 120
HL+GE CP F+ +A+++ T V + ++A TI G SSS + I VN +E W+
Sbjct: 61 HLTGETPCPSHFVLSASSSNTTVTEEGADA----TI-GASSSITPRI--VNSLFEQWVTT 120
Query: 121 DQLLLGWLYNSMTPEIATQVMGYENSKDLWAAIQELFGVQSRAEEDYLRQVFQQTRKCSL 180
D LLLGWLYNSMTP++A Q+MG+ N +DLW A Q+ FGVQSRAEED+LRQ+ Q TRK +
Sbjct: 121 DLLLLGWLYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNT 180
Query: 181 KMVDYLSVMKTHADNLGQAGSPVSNRSLISQ 212
KM +YL VMKT+ DNLGQ GSPV R+LISQ
Sbjct: 181 KMEEYLLVMKTNVDNLGQVGSPVPRRALISQ 202
BLAST of Lag0028444 vs. TAIR 10
Match:
AT5G48050.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )
HSP 1 Score: 55.1 bits (131), Expect = 9.4e-08
Identity = 37/140 (26.43%), Postives = 71/140 (50.71%), Query Frame = 0
Query: 108 STVNPKYES-WLVIDQLLLGWLYNSMTPEIATQVMGYE-NSKDLWAAIQELFGVQSRAEE 167
ST P E W D L+ W+Y ++T + ++ ++DLW +++ LF A
Sbjct: 57 STPTPMTEKRWKERDGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARA 116
Query: 168 DYLRQVFQQTRKCSLKMVDYLSVMKTHADNLGQAGSPVSNRSLISQVLLGLDEEYNPVVA 227
+ T L + +Y +K+ +D L SP+S+R L+ +L GL E+Y+ ++
Sbjct: 117 LQFENELRTTTIDDLSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILN 176
Query: 228 MIQGRVNI-SWSEIQAELLV 245
+I+ + S++E ++ LL+
Sbjct: 177 VIKHKSPFPSFTEARSMLLM 196
BLAST of Lag0028444 vs. TAIR 10
Match:
AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 47.8 bits (112), Expect = 1.5e-05
Identity = 33/127 (25.98%), Postives = 62/127 (48.82%), Query Frame = 0
Query: 105 TMISTVNPKYESWLVIDQLLLGWLYNSMTP-EIATQVMGYENSKDLWAAIQELFGVQSRA 164
T++ T N +W D ++ LY ++TP + + S+D+W I+ F A
Sbjct: 54 TLLPT-NANDVNWQKRDGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDA 113
Query: 165 EEDYLRQVFQQTRKCSLKMVDYLSVMKTHADNLGQAGSPVSNRSLISQVLLGLDEEYNPV 224
L + +++ DY MK AD+L PV++R+L+ VL GL+ +++ +
Sbjct: 114 RALRLDSELRTKDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNI 173
Query: 225 VAMIQGR 231
+ +I+ R
Sbjct: 174 INVIKHR 179
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022151683.1 | 5.6e-71 | 62.11 | uncharacterized protein LOC111019598 [Momordica charantia] | [more] |
XP_038902487.1 | 2.4e-66 | 64.13 | uncharacterized protein LOC120089143 [Benincasa hispida] | [more] |
KAA0026100.1 | 2.1e-65 | 56.73 | uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa] | [more] |
XP_022148963.1 | 1.7e-56 | 78.77 | uncharacterized protein LOC111017501 [Momordica charantia] | [more] |
KAA0067279.1 | 2.4e-53 | 54.00 | uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DCW4 | 2.7e-71 | 62.11 | uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019... | [more] |
A0A5A7SIT7 | 1.0e-65 | 56.73 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A6J1D5J0 | 8.5e-57 | 78.77 | uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017... | [more] |
A0A5A7VPY0 | 1.1e-53 | 54.00 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3BCH9 | 3.3e-53 | 56.40 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
AT5G48050.1 | 9.4e-08 | 26.43 | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE... | [more] |
AT1G34070.1 | 1.5e-05 | 25.98 | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE... | [more] |