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Lag0028443 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTCGCTATCAATCGCCAGCTGGTAACCCTAAAAGAATCATCCTCAAGAAATTTTCTTTCCATCAAGAAAGTGGAAGAAAACTTTGCAAGTTCATGTTATATCAATGCAGAAGAAGATGGTGGATCAAAGGAAATCAACCAAAGGAATTTTGTCTTTGACCGCATTGAGCCTTCAACTACTCGACTTTCAATCTTCCAAAGAATGAGTATGGTTGCAGTAGAAGAAGAAGATCAAAGCTTGACGCCCGCCATCATTCTACATTTAACCTTCCAAAGGCTAAGTGTTTGTGCATCAAGAAAGTGTCAACCTTCAACATCTGTTTTTGATCGCCTCAAAGTAACAAGTGATCAACATAAAAGAAAGGTGGACAACTTGGAAGCTAACTTATTCAATGAAGTAAACAATGACAAGAAGCTTCACAGTACCATGTCGTCACATATGAAGAGGAAGTTTTCTATTCTCATAAACATAGAAGGTTCCTTGAATGTAAACCAAATTTCATCATTTTGATAAATCCTACAAATGAAGGATCTGATCAAGACTATGGTAAAGAAAAAGAAAATTAAGATGTAATGCTCCTTATCGCATGAGCACAAACTGCATGATGCTCCTAATCCACACGAGCTTAAAAGATGAGTGGCAAAAAAAAACTTGAAATACGTTATGACTTGATCCCTTTTCTTCAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAAATCCAGTCCGTGCAAACAAAAAAAATGCCACAAATATCGAAGCATGATTATACAAATTGAAGATGCTTACCCTTATTGGGGGCAACACAATAAATTGAAAACGTACATTGCTATGAATGCAATGCTACGAATCGAATGCACAAAAGAAGGCTTCGTTATTCAAGTTTGGTGTTTCGCTAGCTCAAAGTTCGAGGTCTCACCCCTCCACGTTCGACGATTGCTCCATTCAAGTTTGGCTTATCACTTGCTCCAAGTTTGATACCTCCTTCAAAGGGTGGCCGTTGAAGGGTTCGTTTTCACTTTAACTTCAAATCTCCAAAGGTTGGTAGTTGAAAACTTTGCTTCACTACAAATGTTGGCGGTTGAAGACTTCGCTTTCGCCTCATCTTCAAAATTCACTTCATCTTCAAAGGTTGACAGTCGACAACTTCACTCAATCTTCAAAGGATAACAATGCAAGGATTGGCCTTCACTTCATCTTTCAGGTTGGCGGTTGACGGTATTCGCTTCATCTTCAAATGTTGACAGTTGGCGACTTTCGTTTCGTCTTCAAAAGTTAAAAGTTGACACCCTCACTTCTTTTTTCAAAAGTTGGCGGTTGTCGACTTCACTTCATCTTTAAAGGTTGGCAGTCGAAGGCTTCGCTTTCACTTCATCTTCAAAAGTTGGTGGTTGGCAACTTTTGCTCCATTTTAAAAAATTGGCGGTTGGCGACTTCATTTCATCTTTAAAGGTTGGTAGTTGAAGGCTTCGCTTTCGCTTCATTTTCAAAAGTTGGCAGTTGGCAACTTTCGCTTCATCTTCAAAAGTTGACGGTTGACAACTTCACTTCATCTTCAAAAGTTGGCAGTTGGAGACTTTCGCTCCATCTTCAAAAGTTGATGGTTGGCGGCCTCGCTTCTTCTTCAAAAGTTGACGGGTGA ATGCTCGCTATCAATCGCCAGCTGGTAACCCTAAAAGAATCATCCTCAAGAAATTTTCTTTCCATCAAGAAAGTGGAAGAAAACTTTGCAAGTTCATGTTATATCAATGCAGAAGAAGATGGTGGATCAAAGGAAATCAACCAAAGGAATTTTGTCTTTGACCGCATTGAGCCTTCAACTACTCGACTTTCAATCTTCCAAAGAATGAGTATGGTTGCAGTAGAAGAAGAAGATCAAAGCTTGACGCCCGCCATCATTCTACATTTAACCTTCCAAAGGCTAAGTGTTTGTGCATCAAGAAAGTGTCAACCTTCAACATCTGTTTTTGATCGCCTCAAAGTAACAAGTGATCAACATAAAAGAAAGGTGGACAACTTGGAAGCTAACTTATTCAATGAAGTAAACAATGACAAGAAGCTTCACAGTACCATGTCGTCACATATGAAGAGGAAGTTTTCTATTCTCATAAACATAGAAGCTCAAAGTTCGAGGTCTCACCCCTCCACGTTCGACGATTGCTCCATTCAAGTTTGGCTTATCACTTGCTCCAAGTTTGATACCTCCTTCAAAGGGTGGCCGTTGAAGGGTTGGCGGTTGACGGTATTCGCTTCATCTTCAAATGTTGACAGTTGGCGACTTTCGTTTCGTCTTCAAAAGTTGGTAGTTGAAGGCTTCGCTTTCGCTTCATTTTCAAAAGTTGGCAGTTGGCAACTTTCGCTTCATCTTCAAAAGTTGACGGTTGACAACTTCACTTCATCTTCAAAAGTTGGCAGTTGGAGACTTTCGCTCCATCTTCAAAAGTTGATGGTTGGCGGCCTCGCTTCTTCTTCAAAAGTTGACGGGTGA ATGCTCGCTATCAATCGCCAGCTGGTAACCCTAAAAGAATCATCCTCAAGAAATTTTCTTTCCATCAAGAAAGTGGAAGAAAACTTTGCAAGTTCATGTTATATCAATGCAGAAGAAGATGGTGGATCAAAGGAAATCAACCAAAGGAATTTTGTCTTTGACCGCATTGAGCCTTCAACTACTCGACTTTCAATCTTCCAAAGAATGAGTATGGTTGCAGTAGAAGAAGAAGATCAAAGCTTGACGCCCGCCATCATTCTACATTTAACCTTCCAAAGGCTAAGTGTTTGTGCATCAAGAAAGTGTCAACCTTCAACATCTGTTTTTGATCGCCTCAAAGTAACAAGTGATCAACATAAAAGAAAGGTGGACAACTTGGAAGCTAACTTATTCAATGAAGTAAACAATGACAAGAAGCTTCACAGTACCATGTCGTCACATATGAAGAGGAAGTTTTCTATTCTCATAAACATAGAAGCTCAAAGTTCGAGGTCTCACCCCTCCACGTTCGACGATTGCTCCATTCAAGTTTGGCTTATCACTTGCTCCAAGTTTGATACCTCCTTCAAAGGGTGGCCGTTGAAGGGTTGGCGGTTGACGGTATTCGCTTCATCTTCAAATGTTGACAGTTGGCGACTTTCGTTTCGTCTTCAAAAGTTGGTAGTTGAAGGCTTCGCTTTCGCTTCATTTTCAAAAGTTGGCAGTTGGCAACTTTCGCTTCATCTTCAAAAGTTGACGGTTGACAACTTCACTTCATCTTCAAAAGTTGGCAGTTGGAGACTTTCGCTCCATCTTCAAAAGTTGATGGTTGGCGGCCTCGCTTCTTCTTCAAAAGTTGACGGGTGA MLAINRQLVTLKESSSRNFLSIKKVEENFASSCYINAEEDGGSKEINQRNFVFDRIEPSTTRLSIFQRMSMVAVEEEDQSLTPAIILHLTFQRLSVCASRKCQPSTSVFDRLKVTSDQHKRKVDNLEANLFNEVNNDKKLHSTMSSHMKRKFSILINIEAQSSRSHPSTFDDCSIQVWLITCSKFDTSFKGWPLKGWRLTVFASSSNVDSWRLSFRLQKLVVEGFAFASFSKVGSWQLSLHLQKLTVDNFTSSSKVGSWRLSLHLQKLMVGGLASSSKVDG Homology
BLAST of Lag0028443 vs. NCBI nr
Match: KAA0061611.1 (retrotransposon gag protein [Cucumis melo var. makuwa]) HSP 1 Score: 126.3 bits (316), Expect = 4.1e-25 Identity = 81/174 (46.55%), Postives = 105/174 (60.34%), Query Frame = 0
BLAST of Lag0028443 vs. NCBI nr
Match: KAA0045439.1 (retrotransposon gag protein [Cucumis melo var. makuwa]) HSP 1 Score: 125.9 bits (315), Expect = 5.3e-25 Identity = 90/236 (38.14%), Postives = 131/236 (55.51%), Query Frame = 0
BLAST of Lag0028443 vs. NCBI nr
Match: TYK03695.1 (retrotransposon gag protein [Cucumis melo var. makuwa]) HSP 1 Score: 125.9 bits (315), Expect = 5.3e-25 Identity = 91/230 (39.57%), Postives = 125/230 (54.35%), Query Frame = 0
BLAST of Lag0028443 vs. NCBI nr
Match: KAA0035317.1 (retrotransposon gag protein [Cucumis melo var. makuwa]) HSP 1 Score: 125.6 bits (314), Expect = 7.0e-25 Identity = 72/143 (50.35%), Postives = 96/143 (67.13%), Query Frame = 0
BLAST of Lag0028443 vs. NCBI nr
Match: TYK04576.1 (retrotransposon gag protein [Cucumis melo var. makuwa]) HSP 1 Score: 125.6 bits (314), Expect = 7.0e-25 Identity = 79/174 (45.40%), Postives = 106/174 (60.92%), Query Frame = 0
BLAST of Lag0028443 vs. ExPASy TrEMBL
Match: A0A5A7V7A0 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001760 PE=4 SV=1) HSP 1 Score: 126.3 bits (316), Expect = 2.0e-25 Identity = 81/174 (46.55%), Postives = 105/174 (60.34%), Query Frame = 0
BLAST of Lag0028443 vs. ExPASy TrEMBL
Match: A0A5A7TW31 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold294G00380 PE=4 SV=1) HSP 1 Score: 125.9 bits (315), Expect = 2.6e-25 Identity = 90/236 (38.14%), Postives = 131/236 (55.51%), Query Frame = 0
BLAST of Lag0028443 vs. ExPASy TrEMBL
Match: A0A5D3BX77 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G00570 PE=4 SV=1) HSP 1 Score: 125.9 bits (315), Expect = 2.6e-25 Identity = 91/230 (39.57%), Postives = 125/230 (54.35%), Query Frame = 0
BLAST of Lag0028443 vs. ExPASy TrEMBL
Match: A0A5A7T146 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold228G001160 PE=4 SV=1) HSP 1 Score: 125.6 bits (314), Expect = 3.4e-25 Identity = 72/143 (50.35%), Postives = 96/143 (67.13%), Query Frame = 0
BLAST of Lag0028443 vs. ExPASy TrEMBL
Match: A0A5D3C2C8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002110 PE=4 SV=1) HSP 1 Score: 125.6 bits (314), Expect = 3.4e-25 Identity = 79/174 (45.40%), Postives = 106/174 (60.92%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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