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Lag0028438 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATATTGAAACCTTCCTCGAATGGACCAAACATGTGGAGAATTTTTTCAATTATATGAGTACACCCGAAAGTAAAAAGGTAAGATTGGTAGCTTTGAAGTTGAAAGGTGGAGCCCAAGCATGGTGGGACCAACTAGAGATTAACCGGCAAAGGTATGGTAAACGGTCTACCCAAAGTTGGGAAAGAATGAAAAGGTTAATGAAAGAAAGATTCTTGCCCATAAATTTTGAGCAAATTCTTTATGACCAATATCAAAACTGTCGACAAGGAACAAGATCTGTTTTTGATTATGCTGAGGAATTTCATAGGTTGGGGGCAAGAACCAATCTTATCGAAACTCAACAACACCTTGTAGCAAGATTCAAAGGAGGCTTACGTTATGACATCAAAGAACAGTTAGCTCTTCAACCTCTTGGACACCTCAATGAAGCTATTTCCGCGGCAACAACAGTGGAAGAGCAATTAGAAAATTGTTTTAAGCGTATTCAAGAAGACCTGCGGGTGAGCAAGGCAGTAATTTGACTAAAACCATGGTCGGGGACAAATCATCTCAACAACTCACAGCCGCAGCTCTTAAAGGAAAACAAGTCGACAGCAATGCTCCAAGAGATATCAGTAAGAAGACTACCAATACCTATTCAAGGCCGACCCTTGGGAAATGCTTTAGATGCAATCAAACAGGCCATTTATCGAACAAATGCCCCCAACGCCAGTGTTTTAAAAGGCTCAAGGCGCACTAAGGCGCAATGGCCTCCTGGGGCCTAG ATGGATATTGAAACCTTCCTCGAATGGACCAAACATGTGGAGAATTTTTTCAATTATATGAGTACACCCGAAAGTAAAAAGGTAAGATTGGTAGCTTTGAAGTTGAAAGGTGGAGCCCAAGCATGGTGGGACCAACTAGAGATTAACCGGCAAAGGTATGGTAAACGGTCTACCCAAAGTTGGGAAAGAATGAAAAGGTTAATGAAAGAAAGATTCTTGCCCATAAATTTTGAGCAAATTCTTTATGACCAATATCAAAACTGTCGACAAGGAACAAGATCTGTTTTTGATTATGCTGAGGAATTTCATAGGTTGGGGGCAAGAACCAATCTTATCGAAACTCAACAACACCTTGTAGCAAGATTCAAAGGAGGCTTACGTTATGACATCAAAGAACAGTTAGCTCTTCAACCTCTTGGACACCTCAATGAAGCTATTTCCGCGGCAACAACAGTGGAAGAGCAATTAGAAAATTGTTTTAAGCGTATTCAAGAAGACCTGCGGCCGCAGCTCTTAAAGGAAAACAAGTCGACAGCAATGCTCCAAGAGATATCAGTAAGAAGACTACCAATACCTATTCAAGGCCGACCCTTGGGAAATGCTTTAGATGCAATCAAACAGGCCATTTATCGAACAAATGCCCCCAACGCCAGTGTTTTAAAAGGCTCAAGGCGCACTAAGGCGCAATGGCCTCCTGGGGCCTAG ATGGATATTGAAACCTTCCTCGAATGGACCAAACATGTGGAGAATTTTTTCAATTATATGAGTACACCCGAAAGTAAAAAGGTAAGATTGGTAGCTTTGAAGTTGAAAGGTGGAGCCCAAGCATGGTGGGACCAACTAGAGATTAACCGGCAAAGGTATGGTAAACGGTCTACCCAAAGTTGGGAAAGAATGAAAAGGTTAATGAAAGAAAGATTCTTGCCCATAAATTTTGAGCAAATTCTTTATGACCAATATCAAAACTGTCGACAAGGAACAAGATCTGTTTTTGATTATGCTGAGGAATTTCATAGGTTGGGGGCAAGAACCAATCTTATCGAAACTCAACAACACCTTGTAGCAAGATTCAAAGGAGGCTTACGTTATGACATCAAAGAACAGTTAGCTCTTCAACCTCTTGGACACCTCAATGAAGCTATTTCCGCGGCAACAACAGTGGAAGAGCAATTAGAAAATTGTTTTAAGCGTATTCAAGAAGACCTGCGGCCGCAGCTCTTAAAGGAAAACAAGTCGACAGCAATGCTCCAAGAGATATCAGTAAGAAGACTACCAATACCTATTCAAGGCCGACCCTTGGGAAATGCTTTAGATGCAATCAAACAGGCCATTTATCGAACAAATGCCCCCAACGCCAGTGTTTTAAAAGGCTCAAGGCGCACTAAGGCGCAATGGCCTCCTGGGGCCTAG MDIETFLEWTKHVENFFNYMSTPESKKVRLVALKLKGGAQAWWDQLEINRQRYGKRSTQSWERMKRLMKERFLPINFEQILYDQYQNCRQGTRSVFDYAEEFHRLGARTNLIETQQHLVARFKGGLRYDIKEQLALQPLGHLNEAISAATTVEEQLENCFKRIQEDLRPQLLKENKSTAMLQEISVRRLPIPIQGRPLGNALDAIKQAIYRTNAPNASVLKGSRRTKAQWPPGA Homology
BLAST of Lag0028438 vs. NCBI nr
Match: XP_031745523.1 (uncharacterized protein LOC116405899 [Cucumis sativus]) HSP 1 Score: 230.7 bits (587), Expect = 1.3e-56 Identity = 109/155 (70.32%), Postives = 129/155 (83.23%), Query Frame = 0
BLAST of Lag0028438 vs. NCBI nr
Match: XP_031741035.1 (uncharacterized protein LOC116403692 [Cucumis sativus]) HSP 1 Score: 225.3 bits (573), Expect = 5.4e-55 Identity = 108/155 (69.68%), Postives = 125/155 (80.65%), Query Frame = 0
BLAST of Lag0028438 vs. NCBI nr
Match: XP_031743026.1 (uncharacterized protein LOC116404533 [Cucumis sativus]) HSP 1 Score: 221.9 bits (564), Expect = 5.9e-54 Identity = 106/155 (68.39%), Postives = 124/155 (80.00%), Query Frame = 0
BLAST of Lag0028438 vs. NCBI nr
Match: KAA0054966.1 (transposon Ty3-I Gag-Pol polyprotein isoform X1 [Cucumis melo var. makuwa] >TYK22755.1 transposon Ty3-I Gag-Pol polyprotein isoform X1 [Cucumis melo var. makuwa]) HSP 1 Score: 217.2 bits (552), Expect = 1.5e-52 Identity = 104/177 (58.76%), Postives = 134/177 (75.71%), Query Frame = 0
BLAST of Lag0028438 vs. NCBI nr
Match: KAA0051973.1 (E3 ubiquitin-protein ligase SHPRH isoform X4 [Cucumis melo var. makuwa]) HSP 1 Score: 214.9 bits (546), Expect = 7.3e-52 Identity = 101/155 (65.16%), Postives = 121/155 (78.06%), Query Frame = 0
BLAST of Lag0028438 vs. ExPASy TrEMBL
Match: A0A5D3DGR0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00870 PE=4 SV=1) HSP 1 Score: 217.2 bits (552), Expect = 7.1e-53 Identity = 104/177 (58.76%), Postives = 134/177 (75.71%), Query Frame = 0
BLAST of Lag0028438 vs. ExPASy TrEMBL
Match: A0A5A7U7S6 (E3 ubiquitin-protein ligase SHPRH isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G004530 PE=4 SV=1) HSP 1 Score: 214.9 bits (546), Expect = 3.5e-52 Identity = 101/155 (65.16%), Postives = 121/155 (78.06%), Query Frame = 0
BLAST of Lag0028438 vs. ExPASy TrEMBL
Match: A0A6J1CCQ8 (uncharacterized protein LOC111009540 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111009540 PE=4 SV=1) HSP 1 Score: 197.2 bits (500), Expect = 7.6e-47 Identity = 91/155 (58.71%), Postives = 121/155 (78.06%), Query Frame = 0
BLAST of Lag0028438 vs. ExPASy TrEMBL
Match: A0A6J1CAS9 (uncharacterized protein LOC111009540 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111009540 PE=4 SV=1) HSP 1 Score: 197.2 bits (500), Expect = 7.6e-47 Identity = 91/155 (58.71%), Postives = 121/155 (78.06%), Query Frame = 0
BLAST of Lag0028438 vs. ExPASy TrEMBL
Match: A0A5D3BK55 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00770 PE=4 SV=1) HSP 1 Score: 193.4 bits (490), Expect = 1.1e-45 Identity = 101/192 (52.60%), Postives = 131/192 (68.23%), Query Frame = 0
BLAST of Lag0028438 vs. TAIR 10
Match: AT1G47350.1 (F-box associated ubiquitination effector family protein ) HSP 1 Score: 47.8 bits (112), Expect = 1.4e-05 Identity = 27/78 (34.62%), Postives = 46/78 (58.97%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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