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Lag0028423 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATATTAAAGACAAGTGGTTAAGTTTGGCTGGATATTCTATGGAAGCATTGGAGAGGATCTGTGTGGGGCCTGGGCGATTTGGAACGATAGAAACAATGTCGTTCATCAGCGCTAGATTCCTAGCCCATTGGTTAGATGTGAATGGATTAATGACTACCTGGAAGAGTTTTTAAAGGCCAATCCGAGGTCTATTACTACTTCTCAGAAAATGGAAGACGTTGGAAAAATAATTTATGAGGGCGAGAACTTGATTATGCATACAGATGCATCTTTTTTGGCAGGGCAGTATACATGTGGTTTGTGATGCGTGATAAAGTGGGCAATTTACAGGCGGTGAGAAATGCTTGTGCTACGACGTTTTCAACTCCTTTGGAAGCGGAAGCGTTGGCGGTGCTTGAAGGGATGCGTTTGGCAACAATGTTGAATGTTAAGCGTTTGACAATATTGTCAGATTCATTGACGGTGATAAATTCAATAAACTACAAGATACACGTGGATTCAAGTATTGCGACGACACTATGGGACATCAAAGAGTATCATAAGTTTTTTGAGTGTATTACTTTTCATTTTACGAGTCGTAATTTTAATGGCTTGGCTCATAGAATTGCCCAAATGGGTTTATCTACATTACCACATCTGTGGTTAGGTGATTATCCTGAGTGGATGGTCGATTTTTCGCTCAAAGAGCGATGTTTCTTTGTATCCCATGGGATTCTTTTCTCTGTTGAATGTGAATGGATAAAAGGCCCACGCAGCGGAAAGTATTACCGAACCTACTGA ATGGATATTAAAGACAAGTGGTTAAGTTTGGCTGGATATTCTATGGAAGCATTGGAGAGGATCTGTGTGGGGCCTGGGCGATTTGGAACGATAGAAACAATGTCGTTCATCAGCGCTAGATTCCTAGCCCATTGGGCAGTATACATGTGGTTTGTGATGCGTGATAAAGTGGGCAATTTACAGGCGGTGAGAAATGCTTGTGCTACGACGTTTTCAACTCCTTTGGAAGCGGAAGCGTTGGCGGTGCTTGAAGGGATGCGTTTGGCAACAATGTTGAATGTTAAGCGTTTGACAATATTGTCAGATTCATTGACGGTGATAAATTCAATAAACTACAAGATACACGTGGATTCAAGTATTGCGACGACACTATGGGACATCAAAGAGTATCATAAGTTTTTTGAGTGTATTACTTTTCATTTTACGAGTCGTAATTTTAATGGCTTGGCTCATAGAATTGCCCAAATGGGTTTATCTACATTACCACATCTGTGGTTAGGTGATTATCCTGAGTGGATGGTCGATTTTTCGCTCAAAGAGCGATGTTTCTTTGTATCCCATGGGATTCTTTTCTCTGTTGAATGTGAATGGATAAAAGGCCCACGCAGCGGAAAGTATTACCGAACCTACTGA ATGGATATTAAAGACAAGTGGTTAAGTTTGGCTGGATATTCTATGGAAGCATTGGAGAGGATCTGTGTGGGGCCTGGGCGATTTGGAACGATAGAAACAATGTCGTTCATCAGCGCTAGATTCCTAGCCCATTGGGCAGTATACATGTGGTTTGTGATGCGTGATAAAGTGGGCAATTTACAGGCGGTGAGAAATGCTTGTGCTACGACGTTTTCAACTCCTTTGGAAGCGGAAGCGTTGGCGGTGCTTGAAGGGATGCGTTTGGCAACAATGTTGAATGTTAAGCGTTTGACAATATTGTCAGATTCATTGACGGTGATAAATTCAATAAACTACAAGATACACGTGGATTCAAGTATTGCGACGACACTATGGGACATCAAAGAGTATCATAAGTTTTTTGAGTGTATTACTTTTCATTTTACGAGTCGTAATTTTAATGGCTTGGCTCATAGAATTGCCCAAATGGGTTTATCTACATTACCACATCTGTGGTTAGGTGATTATCCTGAGTGGATGGTCGATTTTTCGCTCAAAGAGCGATGTTTCTTTGTATCCCATGGGATTCTTTTCTCTGTTGAATGTGAATGGATAAAAGGCCCACGCAGCGGAAAGTATTACCGAACCTACTGA MDIKDKWLSLAGYSMEALERICVGPGRFGTIETMSFISARFLAHWAVYMWFVMRDKVGNLQAVRNACATTFSTPLEAEALAVLEGMRLATMLNVKRLTILSDSLTVINSINYKIHVDSSIATTLWDIKEYHKFFECITFHFTSRNFNGLAHRIAQMGLSTLPHLWLGDYPEWMVDFSLKERCFFVSHGILFSVECEWIKGPRSGKYYRTY Homology
BLAST of Lag0028423 vs. NCBI nr
Match: KAA3467186.1 (glycine, alanine and asparagine-rich protein-like [Gossypium australe]) HSP 1 Score: 65.9 bits (159), Expect = 4.9e-07 Identity = 41/107 (38.32%), Postives = 61/107 (57.01%), Query Frame = 0
BLAST of Lag0028423 vs. NCBI nr
Match: XP_027067423.1 (uncharacterized protein LOC113693035 [Coffea arabica]) HSP 1 Score: 65.5 bits (158), Expect = 6.4e-07 Identity = 39/130 (30.00%), Postives = 65/130 (50.00%), Query Frame = 0
BLAST of Lag0028423 vs. NCBI nr
Match: XP_027067422.1 (uncharacterized protein LOC113693034 [Coffea arabica]) HSP 1 Score: 64.7 bits (156), Expect = 1.1e-06 Identity = 39/132 (29.55%), Postives = 65/132 (49.24%), Query Frame = 0
BLAST of Lag0028423 vs. NCBI nr
Match: XP_027065006.1 (uncharacterized protein LOC113691032 [Coffea arabica]) HSP 1 Score: 63.9 bits (154), Expect = 1.9e-06 Identity = 39/130 (30.00%), Postives = 63/130 (48.46%), Query Frame = 0
BLAST of Lag0028423 vs. NCBI nr
Match: MBA0701815.1 (hypothetical protein [Gossypium aridum]) HSP 1 Score: 61.2 bits (147), Expect = 1.2e-05 Identity = 37/107 (34.58%), Postives = 58/107 (54.21%), Query Frame = 0
BLAST of Lag0028423 vs. ExPASy TrEMBL
Match: A0A5B6VDX1 (Glycine, alanine and asparagine-rich protein-like OS=Gossypium australe OX=47621 GN=EPI10_002222 PE=4 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 2.4e-07 Identity = 41/107 (38.32%), Postives = 61/107 (57.01%), Query Frame = 0
BLAST of Lag0028423 vs. ExPASy TrEMBL
Match: A0A6P6SNH4 (uncharacterized protein LOC113693035 OS=Coffea arabica OX=13443 GN=LOC113693035 PE=4 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 3.1e-07 Identity = 39/130 (30.00%), Postives = 65/130 (50.00%), Query Frame = 0
BLAST of Lag0028423 vs. ExPASy TrEMBL
Match: A0A6P6SNG7 (uncharacterized protein LOC113693034 OS=Coffea arabica OX=13443 GN=LOC113693034 PE=4 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 5.3e-07 Identity = 39/132 (29.55%), Postives = 65/132 (49.24%), Query Frame = 0
BLAST of Lag0028423 vs. ExPASy TrEMBL
Match: A0A6P6SGT5 (uncharacterized protein LOC113691032 OS=Coffea arabica OX=13443 GN=LOC113691032 PE=4 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 9.0e-07 Identity = 39/130 (30.00%), Postives = 63/130 (48.46%), Query Frame = 0
BLAST of Lag0028423 vs. ExPASy TrEMBL
Match: A0A6P6UZA6 (uncharacterized protein LOC113716063 OS=Coffea arabica OX=13443 GN=LOC113716063 PE=4 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 5.8e-06 Identity = 32/104 (30.77%), Postives = 58/104 (55.77%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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