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Lag0028343 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCTGGTGTATATATGACATGGTACGACTGTTCAAGCCAAGTAAACGACTTTAACGGGGCAGTATATCAATCATATGACACGCTTGATGAAGCTGAGGATGCTTACAACACGTTCGTAGGTGGTGTAGAGGACCGTTTCATAGATCGAGGACAAGTACTCCTAGACCGAAGTAGGTGTACACATTCTATACGTAGGAACATAGTTAGTCCATCCCTTAGGGCCTGTACTAGAACATACCACATTTTCCTCTTCGTACTAGGGTTCATACTTGGTGTAGTGGTTGTTGTACTAGTAAGTCGTTTGTAGGGAGTCGATAGGACTGATGTGTATTGGCAACTTGACTTTCAGGACTTTGAAAATCGTACAAGCCATGGATGATCTTAAAATTGAAACCCAGGAGTTGATTGCAATTCTGACTATCATTTGTGCCACCCAGTACCAGTTCATAGTAGCTGTACTGGGAATCTTACAAACCATCCAGTCAACCAGTTCTCGATCTCCTCCACACGTACGAAATCAGATCAGACAACTTAACTTCTTCCGCCTGATTCATGAAGATGATCTTGCATGTTGCGAAAATACACGAATGGATCAGAGAACTTTCACAATATTATGTTCCTTGTACGAACGACAGGCGGTTGGAAGCCACAAACTACGTCGACGTGGAGGAGATGGTTGCAATGTTCCTCCACATCGCCGCACATGATGTGAAGAACCGCGTAATCTGACGACAGTTCGTGCGGTCAGGAGAGACCGTGTCTAGGCATTTCAATGCTGTGTTGGATGCGATCCTCCGACTGCATACAACCCTGTTGAAAACACCGGAGCCCGTGACGAGGACTTGCACGGACGATGGATGAAGGTGGTTCGAGATAATTAATTGTTGTCACATTGTCTTTCTTACGACAAGGCAACTGAACACCAATACTCGACCACTAAAACGCTATCGCTCGTGATTCACAGAACTGTTTAGGTGCGTTAGATGGGATGCACATCATGGTGAACGTGAGTGCAGCCGATCGACCCAGGTACCGAACAAGTAAGGGCGAGATCGCGACAAACATGTTTGCCGTCCTTTCGCAGAACGACGAGTTCATATTCGTCTTTCTGGTTGGGAAGGCTCGACCTCCGACTCAAGGGTTCTTCACGATGCAGTGTCCCGTCCGACAGGGCTTAAGGTTCCGAGGGGATATTACTACCTGTGCGACGCTGGTTATCTAA ATGCCTGGTGTATATATGACATGGTACGACTGTTCAAGCCAAGTAAACGACTTTAACGGGGCAGTATATCAATCATATGACACGCTTGATGAAGCTGAGGATGCTTACAACACGTTCGTAGGTGGTGTAGAGGACCGTTTCATAGATCGAGGACAAGTACTCCTAGACCGAAGTAGGACTTTGAAAATCGTACAAGCCATGGATGATCTTAAAATTGAAACCCAGGAGTTGATTGCAATTCTGACTATCATTTGTGCCACCCAGTACCAGTTCATAGTAGCTGTACTGGGAATCTTACAAACCATCCAGTCAACCAGTTCTCGATCTCCTCCACACGTACGAAATCAGATCAGACAACTTAACTTCTTCCGCCTGATTCATGAAGATGATCTTGCATGTTGCGAAAATACACGAATGGATCAGAGAACTTTCACAATATTATGTTCCTTGTACGAACGACAGGCGGTTGGAAGCCACAAACTACGTCGACGTGGAGGAGATGGTTGCAATGCATTTCAATGCTGTGTTGGATGCGATCCTCCGACTGCATACAACCCTGTTGAAAACACCGGAGCCCGTGACGAGGACTTGCACGGACGATGGATGAAGAACTGTTTAGGTGCGTTAGATGGGATGCACATCATGGTGAACGTGAGTGCAGCCGATCGACCCAGGTACCGAACAAGTAAGGGCGAGATCGCGACAAACATGTTTGCCGTCCTTTCGCAGAACGACGAGTTCATATTCGTCTTTCTGGTTGGGAAGGCTCGACCTCCGACTCAAGGGTTCTTCACGATGCAGTGTCCCGTCCGACAGGGCTTAAGGTTCCGAGGGGATATTACTACCTGTGCGACGCTGGTTATCTAA ATGCCTGGTGTATATATGACATGGTACGACTGTTCAAGCCAAGTAAACGACTTTAACGGGGCAGTATATCAATCATATGACACGCTTGATGAAGCTGAGGATGCTTACAACACGTTCGTAGGTGGTGTAGAGGACCGTTTCATAGATCGAGGACAAGTACTCCTAGACCGAAGTAGGACTTTGAAAATCGTACAAGCCATGGATGATCTTAAAATTGAAACCCAGGAGTTGATTGCAATTCTGACTATCATTTGTGCCACCCAGTACCAGTTCATAGTAGCTGTACTGGGAATCTTACAAACCATCCAGTCAACCAGTTCTCGATCTCCTCCACACGTACGAAATCAGATCAGACAACTTAACTTCTTCCGCCTGATTCATGAAGATGATCTTGCATGTTGCGAAAATACACGAATGGATCAGAGAACTTTCACAATATTATGTTCCTTGTACGAACGACAGGCGGTTGGAAGCCACAAACTACGTCGACGTGGAGGAGATGGTTGCAATGCATTTCAATGCTGTGTTGGATGCGATCCTCCGACTGCATACAACCCTGTTGAAAACACCGGAGCCCGTGACGAGGACTTGCACGGACGATGGATGAAGAACTGTTTAGGTGCGTTAGATGGGATGCACATCATGGTGAACGTGAGTGCAGCCGATCGACCCAGGTACCGAACAAGTAAGGGCGAGATCGCGACAAACATGTTTGCCGTCCTTTCGCAGAACGACGAGTTCATATTCGTCTTTCTGGTTGGGAAGGCTCGACCTCCGACTCAAGGGTTCTTCACGATGCAGTGTCCCGTCCGACAGGGCTTAAGGTTCCGAGGGGATATTACTACCTGTGCGACGCTGGTTATCTAA MPGVYMTWYDCSSQVNDFNGAVYQSYDTLDEAEDAYNTFVGGVEDRFIDRGQVLLDRSRTLKIVQAMDDLKIETQELIAILTIICATQYQFIVAVLGILQTIQSTSSRSPPHVRNQIRQLNFFRLIHEDDLACCENTRMDQRTFTILCSLYERQAVGSHKLRRRGGDGCNAFQCCVGCDPPTAYNPVENTGARDEDLHGRWMKNCLGALDGMHIMVNVSAADRPRYRTSKGEIATNMFAVLSQNDEFIFVFLVGKARPPTQGFFTMQCPVRQGLRFRGDITTCATLVI Homology
BLAST of Lag0028343 vs. NCBI nr
Match: KAA0036995.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK21210.1 retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 112.1 bits (279), Expect = 8.2e-21 Identity = 68/179 (37.99%), Postives = 93/179 (51.96%), Query Frame = 0
BLAST of Lag0028343 vs. NCBI nr
Match: KAA0067159.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 108.6 bits (270), Expect = 9.0e-20 Identity = 59/144 (40.97%), Postives = 81/144 (56.25%), Query Frame = 0
BLAST of Lag0028343 vs. NCBI nr
Match: KAA0058874.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 108.2 bits (269), Expect = 1.2e-19 Identity = 73/211 (34.60%), Postives = 102/211 (48.34%), Query Frame = 0
BLAST of Lag0028343 vs. NCBI nr
Match: KAA0063060.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 107.1 bits (266), Expect = 2.6e-19 Identity = 60/145 (41.38%), Postives = 81/145 (55.86%), Query Frame = 0
BLAST of Lag0028343 vs. NCBI nr
Match: KAA0047510.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 107.1 bits (266), Expect = 2.6e-19 Identity = 72/213 (33.80%), Postives = 106/213 (49.77%), Query Frame = 0
BLAST of Lag0028343 vs. ExPASy TrEMBL
Match: A0A5A7T686 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold359G00160 PE=3 SV=1) HSP 1 Score: 112.1 bits (279), Expect = 4.0e-21 Identity = 68/179 (37.99%), Postives = 93/179 (51.96%), Query Frame = 0
BLAST of Lag0028343 vs. ExPASy TrEMBL
Match: A0A5A7VPL4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G002320 PE=3 SV=1) HSP 1 Score: 108.6 bits (270), Expect = 4.4e-20 Identity = 59/144 (40.97%), Postives = 81/144 (56.25%), Query Frame = 0
BLAST of Lag0028343 vs. ExPASy TrEMBL
Match: A0A5A7UUT3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G00380 PE=3 SV=1) HSP 1 Score: 108.2 bits (269), Expect = 5.7e-20 Identity = 73/211 (34.60%), Postives = 102/211 (48.34%), Query Frame = 0
BLAST of Lag0028343 vs. ExPASy TrEMBL
Match: A0A5A7TWH8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G001380 PE=3 SV=1) HSP 1 Score: 107.1 bits (266), Expect = 1.3e-19 Identity = 72/213 (33.80%), Postives = 106/213 (49.77%), Query Frame = 0
BLAST of Lag0028343 vs. ExPASy TrEMBL
Match: A0A5A7V738 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G001760 PE=3 SV=1) HSP 1 Score: 107.1 bits (266), Expect = 1.3e-19 Identity = 60/145 (41.38%), Postives = 81/145 (55.86%), Query Frame = 0
BLAST of Lag0028343 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 47.8 bits (112), Expect = 1.8e-05 Identity = 20/50 (40.00%), Postives = 31/50 (62.00%), Query Frame = 0
BLAST of Lag0028343 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 42.4 bits (98), Expect = 7.4e-04 Identity = 33/159 (20.75%), Postives = 60/159 (37.74%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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