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Lag0028328 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGAAATCGAAATTTGTTTTGGGCGTTTGTGTGGGTGATTTTGGTGTGGAAGCAAAGTGGAGTGGTGGAATGTAATACAGATTTATGCAACTCAATTGAAGCAACGAACAAAGATCTTTTCGAGTTTGCTTTGAACATGGAATTCCTTAAAGCTGAGTTCTTATTGAATGGAGCCCTTGGAAAAGGTCTCGACGCCATTGATTCAGCTCTGGCTTCCGGAGGCCCACCTCCTATTGGTGCTCAAATGGCCAACTTAGATCCTCACATCCGTCCAATCATGGAACAATTTGCGTATCAAGAAGTTGGACACATAAGGTCTCACTCGCTCTCCAATTGAGATTATGTCTTAACCAGTTGACCTATACACGATTAATAATCTAACGATCCTATGATGATTTGTTGTTTGTTTTTGTGGGTTTGTTTTCAGATCCATTAAGAACGCAACTGGTGGAGGTTCTCCCAGGCCATCGTTGGATCTAAGCAAGAGAGCCATGGCGGATTTGGTAGATAAAGCAGTTGGCTACAAACTCAGTCCTCCATTCGACGCTTATGCCAATTCTATCAACTTTCTCCTTGCCGCAAAGATCATCGCTTACGTCGGACTCAACGGCTACGTCGGAACAACCCAACAACTCGTCCTTCCCAAATCTCACAGCGTAAGAAAAAAGAGACAAAACCATAATTCCTTCCATTCTTGTAATCATCATCATCAATGAGTTGACTTGGTGCAGTTGGTGGCGAAGCTGCTCGACGTGGAGGCCGGACAAGACCGAGCAAATTTGCTCTTGAAACTTGATGACATGGTGGTTCCTTATAATATAACTGTTGCTCGATTCACCAACGAGCTCACTTCGGAACTGTTCAATCGGCTCGGAAACTGCAGCATCAAGGATGAAGGATTAATAGTGCCTCAGTCGCTTGGGGCGGAGAATCGAATAGAGAGCAACATTCTCATTGCCCAAACGCCGCAAGAGATCTTGCGGATAATGTATGGAACTGGCAACGAGCTTATGGCAACTGGTGAGATCGTCCTCGCCGGTGTTGGTATAAAAATTGTTGGATCAGTTGTACTTAGATAACTAAGTCAATTCATGATATAAATCAAAGGGGTTGATAGTCCATAAATATGATATCATATATAGCATATGTAGACAAAAGATTAAGAGTAAGGAAAAAATTTAGAATAAGTGATTTTAGCTCAAGTGATTTATGTAAGAACTCAATGATTCAATCATGCACTGAAAGTTAAAAATCGACATTGGCGCTTTATGAGCAAATTGTTAAGAAGAAAAAATACACACTTGTTTCTTGAATATGATTTTTGTTCTGGTAGAATCGTCACCAATATATACAACAAAATTTCCTTTTTATGATGGTAAAAAATCTTCACTTAAAGAAAAGACGATGGTCATTCGCCCGGTATCTATTTGATTGTTATGGTATGTTTTACAATGATGTTCAATGAAAAAAATTGATTCAAATAGTATCTTGCCTTGGAGACACTGGAACAACTCCTAAGCAACGAGTGAGAGCAATAATAGTTGGTTTGAAGCTCATTTTCTTTTTAAGTTTCCTCTCCTTTCCATTTCAGCAAAATTACTTACAAGGGGATGCTTGTTTTATTCCCTAGGGTGTAGCTGAGTGTTGGGAGAGTGAAAATTGTACTCGGATTTTTGGTTCTGTTTCTTCTTCTCCTTCGTCTGTTCTAGTTCTCACATGCTGGGATGTTATTTCTATTTTGTGTGAGATTGTGCATGTTCGGAGATTTTTAAATGGTTAAAATCACTTTTGTAATATTCAAAATCAGTCCGAAAACATGTCTTTAATAATTCAAAATAACGTTTAAAAAGTGTAAAATCAATTACGAAATTAATTTTGAATAATTTAAAGGTATGTTTTGGGATGATTTTGAACATAACAAAAGTGATTTTAGTCATTTCAAAACCACTCCCAAACATGCACTTAAGGTCCGTTTGAAATACCTTTTATTCTAAGTCTTTTTCAAGAATGATTTCTGTTATGGGTAATTTTGGACCACCCAGATGCACAAGGAGCTGACAAGGACAATCGAGCAGAAATCAGACCGGAAGATGGACCCAAGAGGCGAAACCGGCGAGTGGGACGAGCTAAGACCGAAGGGGTCGGGCTTTTGGCCCGACCCCCTACTCGACCCGCTTGTGCGGGTCGAGCCGTCGAGCCCCGTTTGGTCCCTGTAGCCTCTAGCCGCCCTGGATCCGCCTAG ATGAGAAATCGAAATTTGTTTTGGGCGTTTGTGTGGGTGATTTTGGTGTGGAAGCAAAGTGGAGTGGTGGAATGTAATACAGATTTATGCAACTCAATTGAAGCAACGAACAAAGATCTTTTCGAGTTTGCTTTGAACATGGAATTCCTTAAAGCTGAGTTCTTATTGAATGGAGCCCTTGGAAAAGGTCTCGACGCCATTGATTCAGCTCTGGCTTCCGGAGGCCCACCTCCTATTGGTGCTCAAATGGCCAACTTAGATCCTCACATCCGTCCAATCATGGAACAATTTGCGTATCAAGAAGTTGGACACATAAGATCCATTAAGAACGCAACTGGTGGAGGTTCTCCCAGGCCATCGTTGGATCTAAGCAAGAGAGCCATGGCGGATTTGGTAGATAAAGCAGTTGGCTACAAACTCAGTCCTCCATTCGACGCTTATGCCAATTCTATCAACTTTCTCCTTGCCGCAAAGATCATCGCTTACGTCGGACTCAACGGCTACGTCGGAACAACCCAACAACTCGTCCTTCCCAAATCTCACAGCTTGGTGGCGAAGCTGCTCGACGTGGAGGCCGGACAAGACCGAGCAAATTTGCTCTTGAAACTTGATGACATGGTGGTTCCTTATAATATAACTGTTGCTCGATTCACCAACGAGCTCACTTCGGAACTGTTCAATCGGCTCGGAAACTGCAGCATCAAGGATGAAGGATTAATAGTGCCTCAGTCGCTTGGGGCGGAGAATCGAATAGAGAGCAACATTCTCATTGCCCAAACGCCGCAAGAGATCTTGCGGATAATGTATGGAACTGGCAACGAGCTTATGGCAACTGGTGAGATCGTCCTCGCCGGTGTTGATGCACAAGGAGCTGACAAGGACAATCGAGCAGAAATCAGACCGGAAGATGGACCCAAGAGGCGAAACCGGCGAGTGGGACGAGCTAAGACCGAAGGGGTCGGGCTTTTGGCCCGACCCCCTACTCGACCCGCTTGTGCGGGTCGAGCCGTCGAGCCCCGTTTGGTCCCTGTAGCCTCTAGCCGCCCTGGATCCGCCTAG ATGAGAAATCGAAATTTGTTTTGGGCGTTTGTGTGGGTGATTTTGGTGTGGAAGCAAAGTGGAGTGGTGGAATGTAATACAGATTTATGCAACTCAATTGAAGCAACGAACAAAGATCTTTTCGAGTTTGCTTTGAACATGGAATTCCTTAAAGCTGAGTTCTTATTGAATGGAGCCCTTGGAAAAGGTCTCGACGCCATTGATTCAGCTCTGGCTTCCGGAGGCCCACCTCCTATTGGTGCTCAAATGGCCAACTTAGATCCTCACATCCGTCCAATCATGGAACAATTTGCGTATCAAGAAGTTGGACACATAAGATCCATTAAGAACGCAACTGGTGGAGGTTCTCCCAGGCCATCGTTGGATCTAAGCAAGAGAGCCATGGCGGATTTGGTAGATAAAGCAGTTGGCTACAAACTCAGTCCTCCATTCGACGCTTATGCCAATTCTATCAACTTTCTCCTTGCCGCAAAGATCATCGCTTACGTCGGACTCAACGGCTACGTCGGAACAACCCAACAACTCGTCCTTCCCAAATCTCACAGCTTGGTGGCGAAGCTGCTCGACGTGGAGGCCGGACAAGACCGAGCAAATTTGCTCTTGAAACTTGATGACATGGTGGTTCCTTATAATATAACTGTTGCTCGATTCACCAACGAGCTCACTTCGGAACTGTTCAATCGGCTCGGAAACTGCAGCATCAAGGATGAAGGATTAATAGTGCCTCAGTCGCTTGGGGCGGAGAATCGAATAGAGAGCAACATTCTCATTGCCCAAACGCCGCAAGAGATCTTGCGGATAATGTATGGAACTGGCAACGAGCTTATGGCAACTGGTGAGATCGTCCTCGCCGGTGTTGATGCACAAGGAGCTGACAAGGACAATCGAGCAGAAATCAGACCGGAAGATGGACCCAAGAGGCGAAACCGGCGAGTGGGACGAGCTAAGACCGAAGGGGTCGGGCTTTTGGCCCGACCCCCTACTCGACCCGCTTGTGCGGGTCGAGCCGTCGAGCCCCGTTTGGTCCCTGTAGCCTCTAGCCGCCCTGGATCCGCCTAG MRNRNLFWAFVWVILVWKQSGVVECNTDLCNSIEATNKDLFEFALNMEFLKAEFLLNGALGKGLDAIDSALASGGPPPIGAQMANLDPHIRPIMEQFAYQEVGHIRSIKNATGGGSPRPSLDLSKRAMADLVDKAVGYKLSPPFDAYANSINFLLAAKIIAYVGLNGYVGTTQQLVLPKSHSLVAKLLDVEAGQDRANLLLKLDDMVVPYNITVARFTNELTSELFNRLGNCSIKDEGLIVPQSLGAENRIESNILIAQTPQEILRIMYGTGNELMATGEIVLAGVDAQGADKDNRAEIRPEDGPKRRNRRVGRAKTEGVGLLARPPTRPACAGRAVEPRLVPVASSRPGSA Homology
BLAST of Lag0028328 vs. NCBI nr
Match: XP_024466430.1 (desiccation-related protein PCC13-62 [Populus trichocarpa] >PNT58927.1 hypothetical protein POPTR_001G380000 [Populus trichocarpa] >PNT58928.1 hypothetical protein POPTR_001G380000 [Populus trichocarpa]) HSP 1 Score: 284.3 bits (726), Expect = 1.5e-72 Identity = 156/267 (58.43%), Postives = 186/267 (69.66%), Query Frame = 0
BLAST of Lag0028328 vs. NCBI nr
Match: XP_030948269.1 (desiccation-related protein PCC13-62-like [Quercus lobata]) HSP 1 Score: 283.5 bits (724), Expect = 2.5e-72 Identity = 155/280 (55.36%), Postives = 196/280 (70.00%), Query Frame = 0
BLAST of Lag0028328 vs. NCBI nr
Match: KAG5254810.1 (desiccation-related protein [Salix suchowensis]) HSP 1 Score: 282.0 bits (720), Expect = 7.3e-72 Identity = 154/267 (57.68%), Postives = 185/267 (69.29%), Query Frame = 0
BLAST of Lag0028328 vs. NCBI nr
Match: KAF9867411.1 (hypothetical protein H0E87_026224 [Populus deltoides]) HSP 1 Score: 280.0 bits (715), Expect = 2.8e-71 Identity = 155/267 (58.05%), Postives = 184/267 (68.91%), Query Frame = 0
BLAST of Lag0028328 vs. NCBI nr
Match: KAF9666638.1 (hypothetical protein SADUNF_Sadunf16G0249700 [Salix dunnii]) HSP 1 Score: 280.0 bits (715), Expect = 2.8e-71 Identity = 155/267 (58.05%), Postives = 185/267 (69.29%), Query Frame = 0
BLAST of Lag0028328 vs. ExPASy Swiss-Prot
Match: P22242 (Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum OX=4153 PE=2 SV=1) HSP 1 Score: 224.2 bits (570), Expect = 2.4e-57 Identity = 122/229 (53.28%), Postives = 152/229 (66.38%), Query Frame = 0
BLAST of Lag0028328 vs. ExPASy TrEMBL
Match: B9GGY2 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G380000 PE=4 SV=1) HSP 1 Score: 284.3 bits (726), Expect = 7.1e-73 Identity = 156/267 (58.43%), Postives = 186/267 (69.66%), Query Frame = 0
BLAST of Lag0028328 vs. ExPASy TrEMBL
Match: A0A7N2N3E4 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1) HSP 1 Score: 283.5 bits (724), Expect = 1.2e-72 Identity = 155/280 (55.36%), Postives = 196/280 (70.00%), Query Frame = 0
BLAST of Lag0028328 vs. ExPASy TrEMBL
Match: A0A6N2LFT0 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS226814 PE=4 SV=1) HSP 1 Score: 280.4 bits (716), Expect = 1.0e-71 Identity = 153/267 (57.30%), Postives = 185/267 (69.29%), Query Frame = 0
BLAST of Lag0028328 vs. ExPASy TrEMBL
Match: A0A5N5JVJ2 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_025634 PE=4 SV=1) HSP 1 Score: 279.6 bits (714), Expect = 1.7e-71 Identity = 153/267 (57.30%), Postives = 184/267 (68.91%), Query Frame = 0
BLAST of Lag0028328 vs. ExPASy TrEMBL
Match: A0A5N5JRF8 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_025635 PE=4 SV=1) HSP 1 Score: 278.1 bits (710), Expect = 5.1e-71 Identity = 153/267 (57.30%), Postives = 184/267 (68.91%), Query Frame = 0
BLAST of Lag0028328 vs. TAIR 10
Match: AT1G47980.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62730.1); Has 169 Blast hits to 169 proteins in 41 species: Archae - 0; Bacteria - 68; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 248.8 bits (634), Expect = 6.4e-66 Identity = 135/269 (50.19%), Postives = 177/269 (65.80%), Query Frame = 0
BLAST of Lag0028328 vs. TAIR 10
Match: AT3G62730.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.02 two leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47980.1); Has 172 Blast hits to 172 proteins in 41 species: Archae - 0; Bacteria - 73; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 244.6 bits (623), Expect = 1.2e-64 Identity = 141/268 (52.61%), Postives = 177/268 (66.04%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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