Lag0028288 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0028288
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	pistil-specific extensin-like protein
Location	chr8: 17685976 .. 17686317 (+)
RNA-Seq Expression	Lag0028288
Synteny	Lag0028288

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACTACGCGAGCAATCTGACGGACAAATTAGGGCAATTTGATATCACAATCGAGAAATCCATTCACGGCAAGAAATTGAACCCGAAGAAATGCTCGGTGCGGCTGGTTTTGTCTCCGGATCCAACCTGCAACATCATGACCGGTTTTGCCAGCGGCCGATCTGGCGATGGTTTAACTGTAGAAGCGGTGATGGCATCCACGAGCAGCAAGATCTACACGATTCGATGGAACCCACGAGCAATCTCCACGCGATTTTCTGATTCCGACAGACCCACGGTTAAGCGAACCCCGCTTCAAATCGCGAATAGATCCGGTAGACACGAGCGAAGAAAAGGGTGA

mRNA sequence

ATGCACTACGCGAGCAATCTGACGGACAAATTAGGGCAATTTGATATCACAATCGAGAAATCCATTCACGGCAAGAAATTGAACCCGAAGAAATGCTCGGTGCGGCTGGTTTTGTCTCCGGATCCAACCTGCAACATCATGACCGGTTTTGCCAGCGGCCGATCTGGCGATGGTTTAACTGTAGAAGCGGTGATGGCATCCACGAGCAGCAAGATCTACACGATTCGATGGAACCCACGAGCAATCTCCACGCGATTTTCTGATTCCGACAGACCCACGGTTAAGCGAACCCCGCTTCAAATCGCGAATAGATCCGGTAGACACGAGCGAAGAAAAGGGTGA

Coding sequence (CDS)

ATGCACTACGCGAGCAATCTGACGGACAAATTAGGGCAATTTGATATCACAATCGAGAAATCCATTCACGGCAAGAAATTGAACCCGAAGAAATGCTCGGTGCGGCTGGTTTTGTCTCCGGATCCAACCTGCAACATCATGACCGGTTTTGCCAGCGGCCGATCTGGCGATGGTTTAACTGTAGAAGCGGTGATGGCATCCACGAGCAGCAAGATCTACACGATTCGATGGAACCCACGAGCAATCTCCACGCGATTTTCTGATTCCGACAGACCCACGGTTAAGCGAACCCCGCTTCAAATCGCGAATAGATCCGGTAGACACGAGCGAAGAAAAGGGTGA

Protein sequence

MHYASNLTDKLGQFDITIEKSIHGKKLNPKKCSVRLVLSPDPTCNIMTGFASGRSGDGLTVEAVMASTSSKIYTIRWNPRAISTRFSDSDRPTVKRTPLQIANRSGRHERRKG

Homology

[Close]

BLAST of Lag0028288 vs. NCBI nr
Match: XP_022144725.1 (pistil-specific extensin-like protein [Momordica charantia])

HSP 1 Score: 105.9 bits (263), Expect = 2.3e-19
Identity = 48/56 (85.71%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 1   MHYASNLTDKLGQFDITIEKSIHGKKLNPKKCSVRLVLSPDPTCNIMTGFASGRSG 57
           MHYAS+LTD+LGQFDITI+K +HGKKLNPKKCSVRLV SPDPTCNIMT FA GRSG
Sbjct: 71  MHYASDLTDELGQFDITIDKLVHGKKLNPKKCSVRLVSSPDPTCNIMTDFAGGRSG 126

[Close]

BLAST of Lag0028288 vs. NCBI nr
Match: XP_038905672.1 (pistil-specific extensin-like protein [Benincasa hispida])

HSP 1 Score: 103.2 bits (256), Expect = 1.5e-18
Identity = 48/56 (85.71%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 1   MHYASNLTDKLGQFDITIEKSIHGKKLNPKKCSVRLVLSPDPTCNIMTGFASGRSG 57
           MHYAS+LTD+LGQFDI I K IHGKKLNPKKCSVRLV SPDPTCNIMT FA GRSG
Sbjct: 72  MHYASDLTDELGQFDIAIAKFIHGKKLNPKKCSVRLVSSPDPTCNIMTDFAGGRSG 127

[Close]

BLAST of Lag0028288 vs. NCBI nr
Match: KAA0043946.1 (pistil-specific extensin-like protein [Cucumis melo var. makuwa] >TYK25194.1 pistil-specific extensin-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-16
Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 1   MHYASNLTDKLGQFDITIEKSIHGKKLNPKKCSVRLVLSPDPTCNIMTGFASGRSG 57
           MHYAS+LTD+LGQFDITI K I+GKKLNPKKCSVRLV SPD  CN+MT FA GRSG
Sbjct: 60  MHYASDLTDELGQFDITINKFINGKKLNPKKCSVRLVSSPDLACNVMTDFAGGRSG 115

[Close]

BLAST of Lag0028288 vs. NCBI nr
Match: XP_008442766.1 (PREDICTED: pistil-specific extensin-like protein [Cucumis melo])

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-16
Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 1   MHYASNLTDKLGQFDITIEKSIHGKKLNPKKCSVRLVLSPDPTCNIMTGFASGRSG 57
           MHYAS+LTD+LGQFDITI K I+GKKLNPKKCSVRLV SPD  CN+MT FA GRSG
Sbjct: 68  MHYASDLTDELGQFDITINKFINGKKLNPKKCSVRLVSSPDLACNVMTDFAGGRSG 123

[Close]

BLAST of Lag0028288 vs. NCBI nr
Match: XP_004137994.2 (pistil-specific extensin-like protein [Cucumis sativus] >KGN59025.1 hypothetical protein Csa_001709 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-16
Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 1   MHYASNLTDKLGQFDITIEKSIHGKKLNPKKCSVRLVLSPDPTCNIMTGFASGRSG 57
           MHYAS+LTD+LGQFDITI K I+GKKLNPKKCSVRLV SPD  CN+MT FA GRSG
Sbjct: 68  MHYASDLTDELGQFDITINKFINGKKLNPKKCSVRLVSSPDLACNVMTDFAGGRSG 123

The following BLAST results are available for this feature:

BLAST of Lag0028288 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144725.1	2.3e-19	85.71	pistil-specific extensin-like protein [Momordica charantia]	[more]
XP_038905672.1	1.5e-18	85.71	pistil-specific extensin-like protein [Benincasa hispida]	[more]
KAA0043946.1	1.4e-16	80.36	pistil-specific extensin-like protein [Cucumis melo var. makuwa] >TYK25194.1 pis...	[more]
XP_008442766.1	1.4e-16	80.36	PREDICTED: pistil-specific extensin-like protein [Cucumis melo]	[more]
XP_004137994.2	1.4e-16	80.36	pistil-specific extensin-like protein [Cucumis sativus] >KGN59025.1 hypothetical...	[more]

BLAST of Lag0028288 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF01190	Pollen_Ole_e_1	coord: 3..56 e-value: 5.3E-9 score: 36.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..113
None	No IPR available	PANTHER	PTHR33470	OS01G0164075 PROTEIN	coord: 1..68
None	No IPR available	PANTHER	PTHR33470:SF29	POLLEN OLE E 1 ALLERGEN AND EXTENSIN FAMILY PROTEIN	coord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0028288.1	Lag0028288.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0071944	cell periphery