Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCGTATACAACAATCGCAGTATCAGCCGATATATACAATGTCCTTGTAAGGACCATGGTATCACCGTTCGACGTAGAAACTACATTCGTATTCGGCAGATCGGAATATATGGCCGCATTAAGATAAGATTAGCTCATATTGATAGCGCGATGGATACTGGAGTAGCCAATATCACTGGCGTGTTCACGCTATCTCTTCTTCGTGATAAGACCCCGTATCTGCCTACCGGTGTCGAATTACTACCAGATTTCAATGAATTGTTTGGATCGTTAGAATCCAGTTACGGGAAATTAACAGTATTGCCCCGACACAATGGTCGTTACTGCATTGAACGTGTATGGCAGAAGAACATCTGTGTTGATCGGAAGTCTGTCGAGTTTACGGTAAAGATGGTTCGTCAATATTATAATCGACGCTATGCTATTTGGACGTCGTTCAAGGACACCGGAGATCTTCTAGGTGGCGGAAACTATAGAAACGTATCAAAGAATGCATTTTTCGTTTGCTATACATGGGTGTCGGAAACGACATAG
mRNA sequence
ATGGTCGTATACAACAATCGCAGTATCAGCCGATATATACAATGTCCTTGTAAGGACCATGGTATCACCGTTCGACGTAGAAACTACATTCGTATTCGGCAGATCGGAATATATGGCCGCATTAAGATAAGATTAGCTCATATTGATAGCGCGATGGATACTGGAGTAGCCAATATCACTGGCGTGTTCACGCTATCTCTTCTTCGTGATAAGACCCCGTATCTGCCTACCGGTGTCGAATTACTACCAGATTTCAATGAATTGTTTGGATCGTTAGAATCCAGTTACGGGAAATTAACAGTATTGCCCCGACACAATGGTCGTTACTGCATTGAACGTGTATGGCAGAAGAACATCTGTGTTGATCGGAAGTCTGTCGAGTTTACGGTAAAGATGGTTCGTCAATATTATAATCGACGCTATGCTATTTGGACGTCGTTCAAGGACACCGGAGATCTTCTAGGTGGCGGAAACTATAGAAACGTATCAAAGAATGCATTTTTCGTTTGCTATACATGGGTGTCGGAAACGACATAG
Coding sequence (CDS)
ATGGTCGTATACAACAATCGCAGTATCAGCCGATATATACAATGTCCTTGTAAGGACCATGGTATCACCGTTCGACGTAGAAACTACATTCGTATTCGGCAGATCGGAATATATGGCCGCATTAAGATAAGATTAGCTCATATTGATAGCGCGATGGATACTGGAGTAGCCAATATCACTGGCGTGTTCACGCTATCTCTTCTTCGTGATAAGACCCCGTATCTGCCTACCGGTGTCGAATTACTACCAGATTTCAATGAATTGTTTGGATCGTTAGAATCCAGTTACGGGAAATTAACAGTATTGCCCCGACACAATGGTCGTTACTGCATTGAACGTGTATGGCAGAAGAACATCTGTGTTGATCGGAAGTCTGTCGAGTTTACGGTAAAGATGGTTCGTCAATATTATAATCGACGCTATGCTATTTGGACGTCGTTCAAGGACACCGGAGATCTTCTAGGTGGCGGAAACTATAGAAACGTATCAAAGAATGCATTTTTCGTTTGCTATACATGGGTGTCGGAAACGACATAG
Protein sequence
MVVYNNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTVLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSKNAFFVCYTWVSETT
Homology
BLAST of Lag0028281 vs. NCBI nr
Match:
ADW24247.1 (NSP protein [Kudzu mosaic virus])
HSP 1 Score: 119.8 bits (299), Expect = 2.4e-23
Identity = 63/175 (36.00%), Postives = 97/175 (55.43%), Query Frame = 0
Query: 1 MVVYNNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANIT 60
M + +N I+ +++ P + R R+YI++ + G I +++A D MD G +
Sbjct: 65 MTLGSNSDITSFVEYPVRGINGDGRSRDYIKLLHLSASGVINVKVASSDQVMDAG-SRHN 124
Query: 61 GVFTLSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTVLPRHNGRYCIERVWQKNIC 120
GVF +SLL+D P+LP GV LP + ELFG S+Y + +L H R+ I +K +
Sbjct: 125 GVFVMSLLQDMKPFLPDGVNSLPTYAELFGPYSSAYVNMHLLDSHKQRFRILGSVKKFVS 184
Query: 121 VDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSKNAFFVCYTWVS 176
+V+ K+ + N RY +W SFKD + GGNYRN++KNA V Y +VS
Sbjct: 185 CGMDAVDIPFKLELKLSNGRYPLWASFKDAEEGNCGGNYRNIAKNAIIVSYAFVS 238
BLAST of Lag0028281 vs. NCBI nr
Match:
YP_001974409.1 (BV1 [Tomato yellow vein streak virus] >ABN80225.1 BV1 [Tomato yellow vein streak virus])
HSP 1 Score: 117.5 bits (293), Expect = 1.2e-22
Identity = 64/177 (36.16%), Postives = 99/177 (55.93%), Query Frame = 0
Query: 2 VVYNNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITG 61
V+ +N ++S +I P R R+YI+++++ G +KI H D MD + NI G
Sbjct: 66 VMVHNTAVSTFITFPNLGKTEPNRSRSYIKLKRLRFKGTVKIERLHTDMKMDCIIPNIEG 125
Query: 62 VFTLSLLRDKTPYL-PTGVELLPDFNELFGSLESSYGKLTVLPRHNGRYCIERVWQKNIC 121
VF+L ++ D+ P+L PTG L F+ELFG+ S+G L + R+ I VW+K I
Sbjct: 126 VFSLVIVVDRKPHLNPTG--CLHTFDELFGARIHSHGNLAITASLKDRFYIRHVWKKVIS 185
Query: 122 VDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSKNAFFVCYTWVSET 178
V++ S+ ++ N+RY W++FKD G Y N+SKNA V Y W+S+T
Sbjct: 186 VEKDSMMVDLEGTTSLSNKRYNCWSAFKDLDHDSCNGVYANISKNALLVYYCWMSDT 240
BLAST of Lag0028281 vs. NCBI nr
Match:
QDJ95901.1 (coat protein [Cucumber chlorotic leaf virus])
HSP 1 Score: 117.1 bits (292), Expect = 1.6e-22
Identity = 61/176 (34.66%), Postives = 99/176 (56.25%), Query Frame = 0
Query: 2 VVYNNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITG 61
V+ +N ++S +I PC + R R+YI+++++ G +KI AH D +D I G
Sbjct: 62 VLAHNSALSTFISYPCLGKTLPNRNRSYIKLKRLRFKGTVKIERAHADMNIDGSTPKIEG 121
Query: 62 VFTLSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTVLPRHNGRYCIERVWQKNICV 121
VF+L ++ D+ P++ L F+E+FG+ S+G LTV P RY + V+++ + V
Sbjct: 122 VFSLVVVVDRKPHVGAS-GCLHTFDEVFGARIHSHGNLTVSPSFKDRYYVRHVFKRVLSV 181
Query: 122 DRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSKNAFFVCYTWVSET 178
+ K+ V+ NRRY +W++FKD G Y N+SKNA V Y W+S+T
Sbjct: 182 ENKTTMIDVEGSCSLSNRRYNMWSTFKDFEHDTCKGVYDNISKNALLVYYCWMSDT 236
BLAST of Lag0028281 vs. NCBI nr
Match:
YP_001333682.1 (NSP protein [Kudzu mosaic virus] >ABG26115.1 NSP protein [Kudzu mosaic virus])
HSP 1 Score: 116.3 bits (290), Expect = 2.7e-22
Identity = 62/175 (35.43%), Postives = 96/175 (54.86%), Query Frame = 0
Query: 1 MVVYNNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANIT 60
M + +N I+ +++ P + R R+YI++ + G I +++A D MD G +
Sbjct: 68 MTLGSNSDITSFVEYPVRGINGDGRSRDYIKLLHLSASGVINVKVASSDQVMDGG-SRHN 127
Query: 61 GVFTLSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTVLPRHNGRYCIERVWQKNIC 120
GVF + LL+D P+LP GV LP + ELFG S+Y + +L H R+ I +K +
Sbjct: 128 GVFVMCLLQDMKPFLPDGVNSLPTYAELFGPYSSAYVNMHLLDSHKQRFRILGSVKKFVS 187
Query: 121 VDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSKNAFFVCYTWVS 176
+V+ K+ + N RY +W SFKD + GGNYRN++KNA V Y +VS
Sbjct: 188 CGLDAVDIPFKLDLKLSNGRYPLWASFKDAEEGNCGGNYRNIAKNAIIVSYAFVS 241
BLAST of Lag0028281 vs. NCBI nr
Match:
AFQ60153.1 (nuclear shuttle protein [Okra yellow mosaic Mexico virus - [Sida:Colima 2]])
HSP 1 Score: 115.9 bits (289), Expect = 3.5e-22
Identity = 64/173 (36.99%), Postives = 97/173 (56.07%), Query Frame = 0
Query: 5 NNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFT 64
+N +IS YI P R R+YI+++++ G +KI D AMD + N GVF+
Sbjct: 69 HNSAISTYISYPNLGKTEPNRIRSYIKLKRLRFKGTVKIERVSTDVAMDGTIPNTEGVFS 128
Query: 65 LSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTVLPRHNGRYCIERVWQKNICVDRK 124
L ++ D+ PYL T L F+ELFG++ S+G L+++P RY I V ++ + V++
Sbjct: 129 LVIVVDRKPYL-TAAGCLHTFDELFGAIIHSHGTLSIVPALKDRYYIRHVCKRVLSVEKD 188
Query: 125 SVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSKNAFFVCYTWVSET 178
+V ++ NRRY W SFKD G Y N++KNA V Y+WVS+T
Sbjct: 189 NVMVDIEGSTSLSNRRYNCWASFKDLDLDSCKGVYDNINKNALLVYYSWVSDT 240
BLAST of Lag0028281 vs. ExPASy Swiss-Prot
Match:
P03564 (Nuclear shuttle protein OS=Tomato golden mosaic virus (strain Yellow vein) OX=223341 GN=BR1 PE=3 SV=1)
HSP 1 Score: 111.7 bits (278), Expect = 8.6e-24
Identity = 62/176 (35.23%), Postives = 99/176 (56.25%), Query Frame = 0
Query: 2 VVYNNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITG 61
V+ +N +IS +I P R R+YI+++++ G +KI H+D +MD I G
Sbjct: 66 VMVHNTAISTFITFPSLGKTEPSRSRSYIKLKRLRFKGTVKIERVHVDLSMDGPSPKIEG 125
Query: 62 VFTLSLLRDKTPYL-PTGVELLPDFNELFGSLESSYGKLTVLPRHNGRYCIERVWQKNIC 121
VF+L ++ D+ P+L PTG L F+ELFG+ S+G L V R+ I V+++ I
Sbjct: 126 VFSLVVVVDRQPHLSPTG--CLHTFDELFGARIHSHGNLAVSSALKDRFYIRHVFKRVIS 185
Query: 122 VDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSKNAFFVCYTWVSE 177
V++ S ++ + + NRR+ W++FKD G Y N+SKNA V Y W+S+
Sbjct: 186 VEKDSTMIDLEGMTSFTNRRFNCWSAFKDFDRQACNGVYGNISKNAILVYYCWMSD 239
BLAST of Lag0028281 vs. ExPASy Swiss-Prot
Match:
P27268 (Nuclear shuttle protein OS=Potato yellow mosaic virus (isolate Venezuela) OX=223310 GN=BR1 PE=3 SV=1)
HSP 1 Score: 107.8 bits (268), Expect = 1.2e-22
Identity = 57/174 (32.76%), Postives = 98/174 (56.32%), Query Frame = 0
Query: 5 NNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFT 64
+N ++S +I P + R R+YI+++++ G +K+ H++ MD V GVF+
Sbjct: 69 HNTAVSTFISYPDIAKSLPNRTRSYIKLKRLRFKGIVKVERVHVEVNMDCSVPKTEGVFS 128
Query: 65 LSLLRDKTPYL-PTGVELLPDFNELFGSLESSYGKLTVLPRHNGRYCIERVWQKNICVDR 124
L ++ D+ P+L P+G LP F+ELFG+ S+G L ++P R+ I V ++ I V++
Sbjct: 129 LVIVVDRKPHLGPSGG--LPTFDELFGARIHSHGNLAIVPSLKDRFYIRHVLKRVISVEK 188
Query: 125 KSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSKNAFFVCYTWVSET 178
++ ++ V +RR+ W FKD G Y N++KNA V Y W+S+T
Sbjct: 189 DTMMVDIEGVVALSSRRFNCWAGFKDLDIESRKGVYDNINKNALLVYYCWMSDT 240
BLAST of Lag0028281 vs. ExPASy Swiss-Prot
Match:
P14970 (Nuclear shuttle protein OS=African cassava mosaic virus (isolate Nigerian) OX=222073 GN=BR1 PE=3 SV=1)
HSP 1 Score: 107.1 bits (266), Expect = 2.1e-22
Identity = 61/172 (35.47%), Postives = 91/172 (52.91%), Query Frame = 0
Query: 6 NRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTL 65
N S + ++ P + R R+YI+++ + + G I + D M+ ++ GVF
Sbjct: 70 NTSYTSFVTYPSRGPSGDGRSRDYIKLQSMSVSGVIHAKANCNDDPMEVS-HDVNGVFVF 129
Query: 66 SLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTVLPRHNGRYCIERVWQKNICVDRKS 125
SL+ D PYLP GV+ LP F ELFG+ + Y L +L RY + ++ + +
Sbjct: 130 SLIMDTKPYLPAGVQALPTFEELFGAYSACYVNLRLLNNQQHRYRVLHSVKRFVSSAGDT 189
Query: 126 VEFTVKMVRQYYNRRYAIWTSFKDTGDLL-GGGNYRNVSKNAFFVCYTWVSE 177
+ ++ RRY IW SF D GDL+ GGNYRN+SKNA V Y +VSE
Sbjct: 190 KVSQFRFNKRLSTRRYNIWASFHD-GDLVNAGGNYRNISKNAILVSYAFVSE 239
BLAST of Lag0028281 vs. ExPASy Swiss-Prot
Match:
P03565 (Nuclear shuttle protein OS=African cassava mosaic virus (isolate West Kenyan 844) OX=10818 GN=BR1 PE=3 SV=1)
HSP 1 Score: 106.7 bits (265), Expect = 2.8e-22
Identity = 61/172 (35.47%), Postives = 89/172 (51.74%), Query Frame = 0
Query: 6 NRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTL 65
N S + ++ P + R R+YI+++ + + G I + D M+ + GVF
Sbjct: 70 NTSYTSFVTYPSRGPSGDGRSRDYIKLQSMSVSGVIHAKANGNDDPMEVSPV-VNGVFVF 129
Query: 66 SLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTVLPRHNGRYCIERVWQKNICVDRKS 125
SL+ D PYLP GV+ LP F ELFG + Y L +L RY + ++ + +
Sbjct: 130 SLIMDTKPYLPAGVQGLPTFEELFGPYSACYVNLRLLNNQQHRYRVLHSVKRFVSSSGDT 189
Query: 126 VEFTVKMVRQYYNRRYAIWTSFKDTGDLL-GGGNYRNVSKNAFFVCYTWVSE 177
+ ++ RRY IW SF D GDL+ GGNYRN+SKNA V Y +VSE
Sbjct: 190 KVSQFRFNKRLSTRRYTIWASFHD-GDLVNAGGNYRNISKNAILVSYAFVSE 239
BLAST of Lag0028281 vs. ExPASy Swiss-Prot
Match:
Q9YPS8 (Nuclear shuttle protein OS=Mungbean yellow mosaic virus (strain Vigna) OX=223295 GN=BR1 PE=3 SV=1)
HSP 1 Score: 105.5 bits (262), Expect = 6.2e-22
Identity = 56/175 (32.00%), Postives = 96/175 (54.86%), Query Frame = 0
Query: 1 MVVYNNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANIT 60
M + N +S ++Q P + R R+YI++ ++ + G I I+ ++ D M+ G ++
Sbjct: 65 MSLEKNTDVSSFVQYPARGINGDGRCRDYIKLLKLDVSGVINIKSSNGDQDMEPG-DKLS 124
Query: 61 GVFTLSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTVLPRHNGRYCIERVWQKNIC 120
G+F L++L DK PYLP GV LP F ELFG ++Y + +L R+ + +K +
Sbjct: 125 GLFILTVLLDKKPYLPEGVNKLPSFAELFGPYSAAYANMHLLDSQKPRFKVLGTIKKFVN 184
Query: 121 VDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSKNAFFVCYTWVS 176
++ +K+ R+ +WT+FKD GGNY+N+SKNA + Y ++S
Sbjct: 185 CTPGTLYGPLKLNMPLSRRKCPLWTTFKDPDQGNCGGNYKNISKNAIVLSYAFIS 238
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
ADW24247.1 | 2.4e-23 | 36.00 | NSP protein [Kudzu mosaic virus] | [more] |
YP_001974409.1 | 1.2e-22 | 36.16 | BV1 [Tomato yellow vein streak virus] >ABN80225.1 BV1 [Tomato yellow vein streak... | [more] |
QDJ95901.1 | 1.6e-22 | 34.66 | coat protein [Cucumber chlorotic leaf virus] | [more] |
YP_001333682.1 | 2.7e-22 | 35.43 | NSP protein [Kudzu mosaic virus] >ABG26115.1 NSP protein [Kudzu mosaic virus] | [more] |
AFQ60153.1 | 3.5e-22 | 36.99 | nuclear shuttle protein [Okra yellow mosaic Mexico virus - [Sida:Colima 2]] | [more] |
Match Name | E-value | Identity | Description | |
P03564 | 8.6e-24 | 35.23 | Nuclear shuttle protein OS=Tomato golden mosaic virus (strain Yellow vein) OX=22... | [more] |
P27268 | 1.2e-22 | 32.76 | Nuclear shuttle protein OS=Potato yellow mosaic virus (isolate Venezuela) OX=223... | [more] |
P14970 | 2.1e-22 | 35.47 | Nuclear shuttle protein OS=African cassava mosaic virus (isolate Nigerian) OX=22... | [more] |
P03565 | 2.8e-22 | 35.47 | Nuclear shuttle protein OS=African cassava mosaic virus (isolate West Kenyan 844... | [more] |
Q9YPS8 | 6.2e-22 | 32.00 | Nuclear shuttle protein OS=Mungbean yellow mosaic virus (strain Vigna) OX=223295... | [more] |