Lag0028199 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0028199
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr8: 15406051 .. 15406422 (+)
RNA-Seq ExpressionLag0028199
SyntenyLag0028199
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCTGAGGTACCCCAAAAGTTCAAAATACCAACCTTTCAGCAGTACGATGGAAAGAAGGATCCAGTTCAACATCTAGATACCTACAGGTCTTGGATGGATTTCCATGGGGCGTCTGAAGCAACGAAGTTTCGGGCTTTCTCTCTTACTCTGATGGGAATAGCTAGGCAGTGGTTCAACAAGCTACCTCAAAAGTCTAAAGGGCCATTCAAGGAGTTGGCGCAGGCCCTTGTCACTCAATTCCTAGGAGTCAGAGACCGGCGCAAGCTGCAAATCAACCTACTGACCATTAAGACAAGGCCAAGAGAAAAGCCTGCGAGAGTATATAGGGAGGTTCAACAACGAGGTATTACAGGTGGAAGGATATGA

mRNA sequence

ATGGAAGCTGAGGTACCCCAAAAGTTCAAAATACCAACCTTTCAGCAGTACGATGGAAAGAAGGATCCAGTTCAACATCTAGATACCTACAGGTCTTGGATGGATTTCCATGGGGCGTCTGAAGCAACGAAGTTTCGGGCTTTCTCTCTTACTCTGATGGGAATAGCTAGGCAGTGGTTCAACAAGCTACCTCAAAAGTCTAAAGGGCCATTCAAGGAGTTGGCGCAGGCCCTTGTCACTCAATTCCTAGGAGTCAGAGACCGGCGCAAGCTGCAAATCAACCTACTGACCATTAAGACAAGGCCAAGAGAAAAGCCTGCGAGAGTATATAGGGAGGTTCAACAACGAGGTATTACAGGTGGAAGGATATGA

Coding sequence (CDS)

ATGGAAGCTGAGGTACCCCAAAAGTTCAAAATACCAACCTTTCAGCAGTACGATGGAAAGAAGGATCCAGTTCAACATCTAGATACCTACAGGTCTTGGATGGATTTCCATGGGGCGTCTGAAGCAACGAAGTTTCGGGCTTTCTCTCTTACTCTGATGGGAATAGCTAGGCAGTGGTTCAACAAGCTACCTCAAAAGTCTAAAGGGCCATTCAAGGAGTTGGCGCAGGCCCTTGTCACTCAATTCCTAGGAGTCAGAGACCGGCGCAAGCTGCAAATCAACCTACTGACCATTAAGACAAGGCCAAGAGAAAAGCCTGCGAGAGTATATAGGGAGGTTCAACAACGAGGTATTACAGGTGGAAGGATATGA

Protein sequence

MEAEVPQKFKIPTFQQYDGKKDPVQHLDTYRSWMDFHGASEATKFRAFSLTLMGIARQWFNKLPQKSKGPFKELAQALVTQFLGVRDRRKLQINLLTIKTRPREKPARVYREVQQRGITGGRI
Homology
BLAST of Lag0028199 vs. NCBI nr
Match: XP_022150035.1 (uncharacterized protein LOC111018307 [Momordica charantia])

HSP 1 Score: 112.1 bits (279), Expect = 3.5e-21
Identity = 57/104 (54.81%), Postives = 68/104 (65.38%), Query Frame = 0

Query: 1   MEAEVPQKFKIPTFQQYDGKKDPVQHLDTYRSWMDFHGASEATKFRAFSLTLMGIARQWF 60
           M+ +VP KFK+PT +Q+DG  D V HLD YR WMD +G SEA K R FS TL G AR WF
Sbjct: 5   MKVKVPPKFKLPTVKQFDGTVDLVDHLDAYREWMDIYGVSEAVKCRVFSTTLSGSARVWF 64

Query: 61  NKLPQKSKGPFKELAQALVTQFLGVRDRRKLQINLLTIKTRPRE 105
            +L + S   FK LA+A VTQF+G R R +    LLTIK R  E
Sbjct: 65  RQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVAYLLTIKQRATE 108

BLAST of Lag0028199 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 109.4 bits (272), Expect = 2.3e-20
Identity = 56/104 (53.85%), Postives = 67/104 (64.42%), Query Frame = 0

Query: 1   MEAEVPQKFKIPTFQQYDGKKDPVQHLDTYRSWMDFHGASEATKFRAFSLTLMGIARQWF 60
           M  +VP KFK+PT +Q+D   DPV HLD YR WMD +G SEA + R FS TL G AR WF
Sbjct: 185 MREKVPPKFKLPTVKQFDXTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWF 244

Query: 61  NKLPQKSKGPFKELAQALVTQFLGVRDRRKLQINLLTIKTRPRE 105
            +L + S   FK LA+A VTQF+G R R +    LLTIK R  E
Sbjct: 245 RQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQRTTE 288

BLAST of Lag0028199 vs. NCBI nr
Match: XP_022159109.1 (uncharacterized protein LOC111025548 [Momordica charantia])

HSP 1 Score: 105.5 bits (262), Expect = 3.3e-19
Identity = 53/104 (50.96%), Postives = 67/104 (64.42%), Query Frame = 0

Query: 1   MEAEVPQKFKIPTFQQYDGKKDPVQHLDTYRSWMDFHGASEATKFRAFSLTLMGIARQWF 60
           M  +VP KFK+PT + +DG  +PV HLD YR WMD +G S+A + R FS TL G AR WF
Sbjct: 90  MREKVPPKFKLPTVKPFDGMTEPVDHLDAYREWMDIYGVSDAIRCRVFSTTLNGSARIWF 149

Query: 61  NKLPQKSKGPFKELAQALVTQFLGVRDRRKLQINLLTIKTRPRE 105
            +L + S   FK LA+A +TQF+G R R +    LLTIK R  E
Sbjct: 150 RQLKRGSISSFKSLARAFMTQFVGGRCRSRPVAYLLTIKQRTAE 193

BLAST of Lag0028199 vs. NCBI nr
Match: XP_022147761.1 (uncharacterized protein LOC111016619 [Momordica charantia])

HSP 1 Score: 105.1 bits (261), Expect = 4.3e-19
Identity = 57/124 (45.97%), Postives = 75/124 (60.48%), Query Frame = 0

Query: 1   MEAEVPQKFKIPTFQQYDGKKDPVQHLDTYRSWMDFHGASEATKFRAFSLTLMGIARQWF 60
           M+ +VP KFK+P  ++YDG  DP+ HLD Y  W D +G +EA + R FS TL G  R WF
Sbjct: 1   MKEKVPPKFKLPAIKKYDGSTDPIDHLDVYHEWTDIYGITEAIRCRVFSFTLTGSTRIWF 60

Query: 61  NKLPQKSKGPFKELAQALVTQFLGVRDRRKLQINLLTIKTRPREK----PARVYRE-VQQ 120
            +L +KS   FKELA+A VTQF G  +R +    LLTIK +  E      AR  +E +Q 
Sbjct: 61  QQLKRKSISSFKELARAFVTQFAGGWNRSRPVAYLLTIKQKATESLKDYVARFNKEKLQV 120

BLAST of Lag0028199 vs. NCBI nr
Match: XP_022158344.1 (uncharacterized protein LOC111024851 [Momordica charantia])

HSP 1 Score: 101.7 bits (252), Expect = 4.7e-18
Identity = 50/104 (48.08%), Postives = 63/104 (60.58%), Query Frame = 0

Query: 1   MEAEVPQKFKIPTFQQYDGKKDPVQHLDTYRSWMDFHGASEATKFRAFSLTLMGIARQWF 60
           M+ +   KFK+P   +YDG  DP+ HLD YR W D +   EA + R FS TL G AR WF
Sbjct: 1   MKEKARPKFKLPAIAEYDGSADPIDHLDAYREWADIYDIREAIRCRVFSFTLTGSARNWF 60

Query: 61  NKLPQKSKGPFKELAQALVTQFLGVRDRRKLQINLLTIKTRPRE 105
            +L + S   FKELA+A VTQF+G R + K    LLTIK +  E
Sbjct: 61  RQLKRNSISSFKELAEAFVTQFVGGRVKSKPVTYLLTIKQKATE 104

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022150035.13.5e-2154.81uncharacterized protein LOC111018307 [Momordica charantia][more]
XP_022158830.12.3e-2053.85uncharacterized protein LOC111025293 [Momordica charantia][more]
XP_022159109.13.3e-1950.96uncharacterized protein LOC111025548 [Momordica charantia][more]
XP_022147761.14.3e-1945.97uncharacterized protein LOC111016619 [Momordica charantia][more]
XP_022158344.14.7e-1848.08uncharacterized protein LOC111024851 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0028199.1Lag0028199.1mRNA