Lag0028150 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0028150
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionDNA-directed DNA polymerase
Locationchr8: 14639775 .. 14640185 (-)
RNA-Seq ExpressionLag0028150
SyntenyLag0028150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTAAGAAGTTGTCTGTGAATATTCTCTTAGTAGATGCCTTGTATAACATGCCTAACTATGGGAAATTCATGAAAGAAATGCTTTCTAGGAAGAAAAGTTTGAAAAAAGAAATCTTTAAATTGTCTGAGAGTAGTAGTACCATTGTTTCTGGAAAGATGCCTGCTAAACAGAAAGATCCAGGGAGTTTTAATGTTCCTTGCACTATAGGAGAAGTATATTTCAATAGGGCCTTATGTGATTTAGGTGCTAGTATAAATGTAATGCCCTATTCTATTTACAGGAAGATTGGTTTAACAGGAATGAAGGACACAGACGTCACTCTCCAGCTTGCTGATAGATCGATTACCCACCCGATGGGTGTTGTGGATGACGTGCTGGTGAAAGTCAACAAATTTATCTTCCCGTAG

mRNA sequence

ATGTTTAAGAAGTTGTCTGTGAATATTCTCTTAGTAGATGCCTTGTATAACATGCCTAACTATGGGAAATTCATGAAAGAAATGCTTTCTAGGAAGAAAAGTTTGAAAAAAGAAATCTTTAAATTGTCTGAGAGTAGTAGTACCATTGTTTCTGGAAAGATGCCTGCTAAACAGAAAGATCCAGGGAGTTTTAATGTTCCTTGCACTATAGGAGAAGTATATTTCAATAGGGCCTTATGTGATTTAGGTGCTAGTATAAATGTAATGCCCTATTCTATTTACAGGAAGATTGGTTTAACAGGAATGAAGGACACAGACGTCACTCTCCAGCTTGCTGATAGATCGATTACCCACCCGATGGGTGTTGTGGATGACGTGCTGGTGAAAGTCAACAAATTTATCTTCCCGTAG

Coding sequence (CDS)

ATGTTTAAGAAGTTGTCTGTGAATATTCTCTTAGTAGATGCCTTGTATAACATGCCTAACTATGGGAAATTCATGAAAGAAATGCTTTCTAGGAAGAAAAGTTTGAAAAAAGAAATCTTTAAATTGTCTGAGAGTAGTAGTACCATTGTTTCTGGAAAGATGCCTGCTAAACAGAAAGATCCAGGGAGTTTTAATGTTCCTTGCACTATAGGAGAAGTATATTTCAATAGGGCCTTATGTGATTTAGGTGCTAGTATAAATGTAATGCCCTATTCTATTTACAGGAAGATTGGTTTAACAGGAATGAAGGACACAGACGTCACTCTCCAGCTTGCTGATAGATCGATTACCCACCCGATGGGTGTTGTGGATGACGTGCTGGTGAAAGTCAACAAATTTATCTTCCCGTAG

Protein sequence

MFKKLSVNILLVDALYNMPNYGKFMKEMLSRKKSLKKEIFKLSESSSTIVSGKMPAKQKDPGSFNVPCTIGEVYFNRALCDLGASINVMPYSIYRKIGLTGMKDTDVTLQLADRSITHPMGVVDDVLVKVNKFIFP
Homology
BLAST of Lag0028150 vs. NCBI nr
Match: XP_023874613.1 (uncharacterized protein LOC111987139 [Quercus suber])

HSP 1 Score: 170.6 bits (431), Expect = 9.1e-39
Identity = 81/137 (59.12%), Postives = 108/137 (78.83%), Query Frame = 0

Query: 1   MFKKLSVNILLVDALYNMPNYGKFMKEMLSRKKSLKK-EIFKLSESSSTIVSGKMPAKQK 60
           +FKK+ +NI   DAL  MPNY KF+K+++S+K+ L++ E  KLSE  S I+  K+P K K
Sbjct: 496 IFKKIHINIPFADALEQMPNYAKFLKDIISKKRRLEEFETVKLSEECSAIIQKKLPQKLK 555

Query: 61  DPGSFNVPCTIGEVYFNRALCDLGASINVMPYSIYRKIGLTGMKDTDVTLQLADRSITHP 120
           DPGSF +PCTIG  +F++ LCDLGASIN+MP S+YRK+GL  MK T ++LQLADRSI +P
Sbjct: 556 DPGSFTLPCTIGNSFFDKVLCDLGASINLMPLSVYRKLGLGEMKQTTISLQLADRSIKYP 615

Query: 121 MGVVDDVLVKVNKFIFP 137
            G+++DVLVKV+KFIFP
Sbjct: 616 RGIIEDVLVKVDKFIFP 632

BLAST of Lag0028150 vs. NCBI nr
Match: XP_030520487.1 (uncharacterized protein LOC115734037, partial [Rhodamnia argentea])

HSP 1 Score: 169.9 bits (429), Expect = 1.6e-38
Identity = 83/137 (60.58%), Postives = 108/137 (78.83%), Query Frame = 0

Query: 1   MFKKLSVNILLVDALYNMPNYGKFMKEMLSRKKSLKK-EIFKLSESSSTIVSGKMPAKQK 60
           +FKKL +NI   DAL  MP+Y KF+KE+L+ K+ L+  E  KL+E  S I+  K+P K K
Sbjct: 142 VFKKLHINIPFADALAQMPSYAKFLKEILANKRKLEDYETVKLNEECSAILQNKLPPKLK 201

Query: 61  DPGSFNVPCTIGEVYFNRALCDLGASINVMPYSIYRKIGLTGMKDTDVTLQLADRSITHP 120
           DPGSF +PCTIG  YF++ALCDLGASIN+MP+S++RK+GL  +K T V+LQLADRSI +P
Sbjct: 202 DPGSFTIPCTIGNSYFDKALCDLGASINLMPHSVFRKLGLGEVKATTVSLQLADRSIKYP 261

Query: 121 MGVVDDVLVKVNKFIFP 137
            G+V+DVLVKV+KFIFP
Sbjct: 262 RGIVEDVLVKVDKFIFP 278

BLAST of Lag0028150 vs. NCBI nr
Match: XP_022893877.1 (uncharacterized protein LOC111408340 [Olea europaea var. sylvestris])

HSP 1 Score: 168.7 bits (426), Expect = 3.5e-38
Identity = 81/137 (59.12%), Postives = 109/137 (79.56%), Query Frame = 0

Query: 1   MFKKLSVNILLVDALYNMPNYGKFMKEMLSRKKSLKK-EIFKLSESSSTIVSGKMPAKQK 60
           +FKK+ +NIL V+AL  MPNY KF+KE++S+K+ L + E  KL+E  STI+  K+P K K
Sbjct: 384 VFKKIHINILFVEALAQMPNYAKFLKEVISKKRKLGEFESVKLTEECSTILQKKLPHKLK 443

Query: 61  DPGSFNVPCTIGEVYFNRALCDLGASINVMPYSIYRKIGLTGMKDTDVTLQLADRSITHP 120
           DPGSFN+PC IG + F+ ALCDLGASIN+MP S+++K+G   +K T +TLQL DRSIT+P
Sbjct: 444 DPGSFNIPCNIGGITFDMALCDLGASINLMPLSVFKKLGFGEVKPTTLTLQLRDRSITYP 503

Query: 121 MGVVDDVLVKVNKFIFP 137
            G+++DVLVKV+KFIFP
Sbjct: 504 KGIIEDVLVKVDKFIFP 520

BLAST of Lag0028150 vs. NCBI nr
Match: KAG7947748.1 (hypothetical protein I3843_14G109500 [Carya illinoinensis])

HSP 1 Score: 168.3 bits (425), Expect = 4.5e-38
Identity = 81/137 (59.12%), Postives = 109/137 (79.56%), Query Frame = 0

Query: 1   MFKKLSVNILLVDALYNMPNYGKFMKEMLSRKKSLKK-EIFKLSESSSTIVSGKMPAKQK 60
           +FKK+ +NI   DAL  MPNY KF+K+++S+K+ L++ E  KLSE  S I+  K+P K K
Sbjct: 498 IFKKIHINIPFADALEQMPNYVKFLKDIISKKRRLEEFETVKLSEECSAILQKKLPQKLK 557

Query: 61  DPGSFNVPCTIGEVYFNRALCDLGASINVMPYSIYRKIGLTGMKDTDVTLQLADRSITHP 120
           DPGSF +PCTIG+ +F+R LCDLGASIN+MP+S+ RK+GL  MK T ++LQLADRSI +P
Sbjct: 558 DPGSFTLPCTIGDSFFDRVLCDLGASINLMPFSVCRKLGLGEMKHTTISLQLADRSIKYP 617

Query: 121 MGVVDDVLVKVNKFIFP 137
            G+++DVLVKV+KFIFP
Sbjct: 618 RGIIEDVLVKVDKFIFP 634

BLAST of Lag0028150 vs. NCBI nr
Match: XP_010906452.1 (uncharacterized protein LOC105033389 [Elaeis guineensis])

HSP 1 Score: 166.8 bits (421), Expect = 1.3e-37
Identity = 79/137 (57.66%), Postives = 108/137 (78.83%), Query Frame = 0

Query: 1   MFKKLSVNILLVDALYNMPNYGKFMKEMLSRKKSLK-KEIFKLSESSSTIVSGKMPAKQK 60
           +FKKL +NI   +AL  MP+Y KF+K++LS+K+ L+  EI  L+E  S I+  K+P+K K
Sbjct: 102 VFKKLHINIPFAEALAQMPSYAKFLKDILSKKRRLEDHEIVMLTEDCSAIIQNKLPSKLK 161

Query: 61  DPGSFNVPCTIGEVYFNRALCDLGASINVMPYSIYRKIGLTGMKDTDVTLQLADRSITHP 120
           DPGSF +PC IG + F +ALCDLGASIN+MP S++RK+GL  +K T V+LQLADRS+T+P
Sbjct: 162 DPGSFTIPCNIGNIEFTKALCDLGASINLMPLSVFRKLGLGDVKPTSVSLQLADRSVTYP 221

Query: 121 MGVVDDVLVKVNKFIFP 137
            G+V+DVLVK++KFIFP
Sbjct: 222 KGIVEDVLVKMDKFIFP 238

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023874613.19.1e-3959.12uncharacterized protein LOC111987139 [Quercus suber][more]
XP_030520487.11.6e-3860.58uncharacterized protein LOC115734037, partial [Rhodamnia argentea][more]
XP_022893877.13.5e-3859.12uncharacterized protein LOC111408340 [Olea europaea var. sylvestris][more]
KAG7947748.14.5e-3859.12hypothetical protein I3843_14G109500 [Carya illinoinensis][more]
XP_010906452.11.3e-3757.66uncharacterized protein LOC105033389 [Elaeis guineensis][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021109Aspartic peptidase domain superfamilyGENE3D2.40.70.10Acid Proteasescoord: 42..136
e-value: 7.5E-16
score: 60.0
NoneNo IPR availablePANTHERPTHR33067FAMILY NOT NAMEDcoord: 18..136
NoneNo IPR availablePANTHERPTHR33067:SF28SUBFAMILY NOT NAMEDcoord: 18..136
NoneNo IPR availableCDDcd00303retropepsin_likecoord: 66..136
e-value: 4.59418E-7
score: 43.094

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0028150.1Lag0028150.1mRNA