Lag0028134 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0028134
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCalcium-binding EF hand family protein
Locationchr8: 14150262 .. 14150905 (+)
RNA-Seq ExpressionLag0028134
SyntenyLag0028134
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAAACCGGCTAACCGGCGTCAACGTGCAGCTCGTCCCGATGCTCGTGTTCGTCGATCGGGTATCGATTTGCCTGATTCTGTTCTCCTTTGTAGACAGAATACATGAGCTGATTTCTCTAGGTTTGTCACTGTTTTTTCAATCTTCCCCCAAAGAAAAGGCTTTGTCAAAAAGCAGTTGCTCAGAATCAGAACACAAAAATTGGACAATGGGCAGAGAAGAAGTGAAATCTGTGATGGAAAAACTTGAGTTGTTTTGCAGCCAAGAAGGAGAGGAGGAAATTCAAATTGGGGAATGTTTTGGAGCTGATGAGCTGACTGCCATGTTTGATGAGAGTGAACCAAGCTTGGAAGAGTTGAAGCAAACATTTAATGTTTTTGATAGAAACAGAGATGGCTTCATTGATGCAGAGGAGCTGCACAGAGTGCTTGCCCTTCTTGGCTCTAATAAAGGCATTTTCATCCATGACTGCCAAAGAATGATTGCCAGATTTGATCACAACAAACATGGTAAAATTGATTTCAATGACTTTGTTAAGTTTATGGAAATTGCCTTGTCCTCAATTTTCTATTGTTTGTACAAGGCTCTTCAATTTCCGTCCACGTGTCTTGCCTTCTCATCAACATTTTTATATGTTCATGA

mRNA sequence

ATGCAAAACCGGCTAACCGGCGTCAACGTGCAGCTCGTCCCGATGCTCGTGTTCGTCGATCGGGTATCGATTTGCCTGATTCTGTTCTCCTTTGTAGACAGAATACATGAGCTGATTTCTCTAGGTTTGTCACTGTTTTTTCAATCTTCCCCCAAAGAAAAGGCTTTGTCAAAAAGCAGTTGCTCAGAATCAGAACACAAAAATTGGACAATGGGCAGAGAAGAAGTGAAATCTGTGATGGAAAAACTTGAGTTGTTTTGCAGCCAAGAAGGAGAGGAGGAAATTCAAATTGGGGAATGTTTTGGAGCTGATGAGCTGACTGCCATGTTTGATGAGAGTGAACCAAGCTTGGAAGAGTTGAAGCAAACATTTAATGTTTTTGATAGAAACAGAGATGGCTTCATTGATGCAGAGGAGCTGCACAGAGTGCTTGCCCTTCTTGGCTCTAATAAAGGCATTTTCATCCATGACTGCCAAAGAATGATTGCCAGATTTGATCACAACAAACATGGCTCTTCAATTTCCGTCCACGTGTCTTGCCTTCTCATCAACATTTTTATATGTTCATGA

Coding sequence (CDS)

ATGCAAAACCGGCTAACCGGCGTCAACGTGCAGCTCGTCCCGATGCTCGTGTTCGTCGATCGGGTATCGATTTGCCTGATTCTGTTCTCCTTTGTAGACAGAATACATGAGCTGATTTCTCTAGGTTTGTCACTGTTTTTTCAATCTTCCCCCAAAGAAAAGGCTTTGTCAAAAAGCAGTTGCTCAGAATCAGAACACAAAAATTGGACAATGGGCAGAGAAGAAGTGAAATCTGTGATGGAAAAACTTGAGTTGTTTTGCAGCCAAGAAGGAGAGGAGGAAATTCAAATTGGGGAATGTTTTGGAGCTGATGAGCTGACTGCCATGTTTGATGAGAGTGAACCAAGCTTGGAAGAGTTGAAGCAAACATTTAATGTTTTTGATAGAAACAGAGATGGCTTCATTGATGCAGAGGAGCTGCACAGAGTGCTTGCCCTTCTTGGCTCTAATAAAGGCATTTTCATCCATGACTGCCAAAGAATGATTGCCAGATTTGATCACAACAAACATGGCTCTTCAATTTCCGTCCACGTGTCTTGCCTTCTCATCAACATTTTTATATGTTCATGA

Protein sequence

MQNRLTGVNVQLVPMLVFVDRVSICLILFSFVDRIHELISLGLSLFFQSSPKEKALSKSSCSESEHKNWTMGREEVKSVMEKLELFCSQEGEEEIQIGECFGADELTAMFDESEPSLEELKQTFNVFDRNRDGFIDAEELHRVLALLGSNKGIFIHDCQRMIARFDHNKHGSSISVHVSCLLINIFICS
Homology
BLAST of Lag0028134 vs. NCBI nr
Match: XP_038904514.1 (probable calcium-binding protein CML45 [Benincasa hispida])

HSP 1 Score: 222.6 bits (566), Expect = 2.8e-54
Identity = 126/180 (70.00%), Postives = 143/180 (79.44%), Query Frame = 0

Query: 1   MQNRLTGVNVQLVPM-LVFVDRVSICLILFSFVDRIHELISLGLSLFFQSSPKEKALSKS 60
           MQNRL  VNVQL+P  LVFVDR SI  ILF+F DRIH+LIS+ LS FFQS  KEKA  +S
Sbjct: 1   MQNRLPDVNVQLIPTPLVFVDRTSILPILFTFADRIHDLISVPLS-FFQSPSKEKASPQS 60

Query: 61  SCSE-------SEHKNWTMGREEVKSVMEKLELFCSQ-EGEEEIQIGECFGADELTAMFD 120
           +CS        ++ KN  M REEV+ VM+KLELFCS+ +G+EE  IGECFG +ELTAMF+
Sbjct: 61  NCSSQSDDQVITQQKNCLMSREEVRFVMDKLELFCSKNDGDEE--IGECFGGEELTAMFE 120

Query: 121 ESEPSLEELKQTFNVFDRNRDGFIDAEELHRVLALLGSNKGIFIHDCQRMIARFDHNKHG 172
           E+EPSLEELKQTFNVFDRNRDGFIDAEELH VL LL SN GIFIHDC+RMIARFDHN  G
Sbjct: 121 ENEPSLEELKQTFNVFDRNRDGFIDAEELHIVLGLLQSNNGIFIHDCKRMIARFDHNNDG 177

BLAST of Lag0028134 vs. NCBI nr
Match: XP_023528818.1 (probable calcium-binding protein CML30 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 196.4 bits (498), Expect = 2.2e-46
Identity = 111/176 (63.07%), Postives = 129/176 (73.30%), Query Frame = 0

Query: 1   MQNRLTGVNVQLVPM-------LVFVDRVSICLILFSFVDRIHELISLGLSLFFQSSPKE 60
           M N    +N+QL+P        LVF+DR SI      F D IH+LISL  S FFQS PKE
Sbjct: 11  MHNPQPTINLQLIPSTTTTTPPLVFIDRASI------FADTIHDLISLVFS-FFQSPPKE 70

Query: 61  KALSKSSCSESEHK-NWTMGREEVKSVMEKLELFCSQEGEEEIQIGECFGADELTAMFDE 120
           KA  +S  S+SE K +W M REEVKSVMEKLEL+C++E ++EI   ECFG DE+  MF+E
Sbjct: 71  KAAPQSRASQSEGKEDWLMSREEVKSVMEKLELYCNEEEDDEID--ECFGRDEVRGMFEE 130

Query: 121 SEPSLEELKQTFNVFDRNRDGFIDAEELHRVLALLGSNKGIFIHDCQRMIARFDHN 169
           +EPSLEELKQTFNVFDRNRDGFIDA+ELH VL LL SN  IFIHDC+ MIARFDHN
Sbjct: 131 NEPSLEELKQTFNVFDRNRDGFIDAQELHTVLGLLASNNTIFIHDCKSMIARFDHN 177

BLAST of Lag0028134 vs. NCBI nr
Match: KAG7017701.1 (putative calcium-binding protein CML30, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 193.4 bits (490), Expect = 1.8e-45
Identity = 108/176 (61.36%), Postives = 128/176 (72.73%), Query Frame = 0

Query: 1   MQNRLTGVNVQLVPM-------LVFVDRVSICLILFSFVDRIHELISLGLSLFFQSSPKE 60
           M N    +N+QL+P        LVF+DR SI      F D IH+L+SL  S FFQS PK+
Sbjct: 1   MHNPQPTINLQLIPSTTTTTPPLVFIDRASI------FADTIHDLVSLAFS-FFQSPPKD 60

Query: 61  KALSKSSCSESEHK-NWTMGREEVKSVMEKLELFCSQEGEEEIQIGECFGADELTAMFDE 120
           KA  +S  S+SE K +W M REEVKSVMEKLEL+C++E ++EI   ECFG DE+  MF+E
Sbjct: 61  KAAPQSRASQSESKEDWLMSREEVKSVMEKLELYCNEEEDDEID--ECFGRDEVRGMFEE 120

Query: 121 SEPSLEELKQTFNVFDRNRDGFIDAEELHRVLALLGSNKGIFIHDCQRMIARFDHN 169
           +EPSLEELKQTFNVFDRNRDGFIDA+ELH VL LL SN  IFIHDC+ MIARFD N
Sbjct: 121 NEPSLEELKQTFNVFDRNRDGFIDAQELHTVLGLLASNNTIFIHDCKSMIARFDRN 167

BLAST of Lag0028134 vs. NCBI nr
Match: XP_022983385.1 (probable calcium-binding protein CML30 [Cucurbita maxima])

HSP 1 Score: 193.4 bits (490), Expect = 1.8e-45
Identity = 109/177 (61.58%), Postives = 128/177 (72.32%), Query Frame = 0

Query: 1   MQNRLTGVNVQLVPM--------LVFVDRVSICLILFSFVDRIHELISLGLSLFFQSSPK 60
           M N    +N+QL+P         LVF+DR SI      F D IH+L+SL  S FFQS PK
Sbjct: 1   MHNPQPTINLQLIPSTTTMMPPPLVFIDRASI------FADTIHDLVSLAFS-FFQSPPK 60

Query: 61  EKALSKSSCSESEHK-NWTMGREEVKSVMEKLELFCSQEGEEEIQIGECFGADELTAMFD 120
           EKA  +S  S+SE K +W M REEVKSVMEKLEL+C++EG++EI   ECFG +E+  MF+
Sbjct: 61  EKAAPQSRASQSEGKEDWLMSREEVKSVMEKLELYCNEEGDDEID--ECFGREEVRGMFE 120

Query: 121 ESEPSLEELKQTFNVFDRNRDGFIDAEELHRVLALLGSNKGIFIHDCQRMIARFDHN 169
           E+EPSLEELKQTFNVFDRNRDGFIDA ELH VL LL SN  IFIHDC+ MIARFD N
Sbjct: 121 ENEPSLEELKQTFNVFDRNRDGFIDAHELHTVLGLLVSNNTIFIHDCKSMIARFDRN 168

BLAST of Lag0028134 vs. NCBI nr
Match: KAG6580956.1 (putative calcium-binding protein CML45, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 193.4 bits (490), Expect = 1.8e-45
Identity = 108/176 (61.36%), Postives = 128/176 (72.73%), Query Frame = 0

Query: 1   MQNRLTGVNVQLVPM-------LVFVDRVSICLILFSFVDRIHELISLGLSLFFQSSPKE 60
           M N    +N+QL+P        LVF+DR SI      F D IH+L+SL  S FFQS PK+
Sbjct: 1   MHNPQPTINLQLIPSTTTTTPPLVFIDRASI------FADTIHDLVSLAFS-FFQSPPKD 60

Query: 61  KALSKSSCSESEHK-NWTMGREEVKSVMEKLELFCSQEGEEEIQIGECFGADELTAMFDE 120
           KA  +S  S+SE K +W M REEVKSVMEKLEL+C++E ++EI   ECFG DE+  MF+E
Sbjct: 61  KAAPQSRASQSESKGDWLMSREEVKSVMEKLELYCNEEEDDEID--ECFGRDEVRGMFEE 120

Query: 121 SEPSLEELKQTFNVFDRNRDGFIDAEELHRVLALLGSNKGIFIHDCQRMIARFDHN 169
           +EPSLEELKQTFNVFDRNRDGFIDA+ELH VL LL SN  IFIHDC+ MIARFD N
Sbjct: 121 NEPSLEELKQTFNVFDRNRDGFIDAQELHTVLGLLASNNTIFIHDCKSMIARFDRN 167

BLAST of Lag0028134 vs. ExPASy Swiss-Prot
Match: Q9MBG5 (Probable calcium-binding protein CML45 OS=Arabidopsis thaliana OX=3702 GN=CML45 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.7e-17
Identity = 47/101 (46.53%), Postives = 66/101 (65.35%), Query Frame = 0

Query: 71  MGREEVKSVMEKLELFCSQEGEEEIQIGECFGADELTAMFDESEPSLEELKQTFNVFDRN 130
           + REE + VM  L LF + +     Q+ E + A E++++F+E E SLEE+KQ F+VFD N
Sbjct: 83  ISREEAEMVMRSLGLFYNDD-----QLQEQYSAKEVSSLFEEKEASLEEVKQAFDVFDEN 142

Query: 131 RDGFIDAEELHRVLALLGSNKGIFIHDCQRMIARFDHNKHG 172
           +DGFIDA EL RVL +LG  +G ++ +C  MI   D NK G
Sbjct: 143 KDGFIDAIELQRVLTILGFKQGSYLDNCLVMIRSLDGNKDG 178

BLAST of Lag0028134 vs. ExPASy Swiss-Prot
Match: Q93Z27 (Probable calcium-binding protein CML46 OS=Arabidopsis thaliana OX=3702 GN=CML46 PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.7e-17
Identity = 47/99 (47.47%), Postives = 66/99 (66.67%), Query Frame = 0

Query: 73  REEVKSVMEKLELFCSQEGEEEIQIGECFGADELTAMFDESEPSLEELKQTFNVFDRNRD 132
           RE+V  VM+ L L   QE E    + + + + E++ +F+E EPSLEE+KQ F+VFD NRD
Sbjct: 93  REDVGMVMKSLGLSTDQENE---GLQKQYSSKEVSNLFEEKEPSLEEVKQAFDVFDENRD 152

Query: 133 GFIDAEELHRVLALLGSNKGIFIHDCQRMIARFDHNKHG 172
           GFID  +L RVL +LG  +G  + +C+RMI  FD +K G
Sbjct: 153 GFIDPIDLQRVLTILGLKQGSNLENCRRMIRSFDGSKDG 188

BLAST of Lag0028134 vs. ExPASy Swiss-Prot
Match: Q9SRR7 (Calmodulin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=CML3 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.3e-09
Identity = 39/98 (39.80%), Postives = 60/98 (61.22%), Query Frame = 0

Query: 74  EEVKSVMEKLELFCSQEGEEEIQIGECFGADELTAMFDESEPSLEELKQTFNVFDRNRDG 133
           +++  ++EK++L     G+  + I E FG    T M +  E   E++++ FNVFD+NRDG
Sbjct: 40  KDLVQMIEKIDL----NGDGYVDIEE-FGGLYQTIMEERDEE--EDMREAFNVFDQNRDG 99

Query: 134 FIDAEELHRVLALLGSNKGIFIHDCQRMIARFDHNKHG 172
           FI  EEL  VLA LG  +G  + DC+RMI++ D +  G
Sbjct: 100 FITVEELRSVLASLGLKQGRTLEDCKRMISKVDVDGDG 130

BLAST of Lag0028134 vs. ExPASy Swiss-Prot
Match: Q9ZR02 (Calmodulin-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=CML6 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.9e-08
Identity = 37/99 (37.37%), Postives = 59/99 (59.60%), Query Frame = 0

Query: 74  EEVKSVMEKLELFCSQEGEEEIQIGECFGADELTAMF-DESEPSLEELKQTFNVFDRNRD 133
           +E+  +++K+++     G+  + I E FG    T M  DE E   E++K+ FNVFDRN D
Sbjct: 40  DELTQIIQKIDV----NGDGCVDIEE-FGELYKTIMVEDEDEVGEEDMKEAFNVFDRNGD 99

Query: 134 GFIDAEELHRVLALLGSNKGIFIHDCQRMIARFDHNKHG 172
           GFI  +EL  VL+ LG  +G  + +C++MI + D +  G
Sbjct: 100 GFITVDELKAVLSSLGLKQGKTLEECRKMIMQVDVDGDG 133

BLAST of Lag0028134 vs. ExPASy Swiss-Prot
Match: Q9LNE7 (Calmodulin-like protein 7 OS=Arabidopsis thaliana OX=3702 GN=CML7 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.9e-08
Identity = 37/98 (37.76%), Postives = 59/98 (60.20%), Query Frame = 0

Query: 74  EEVKSVMEKLELFCSQEGEEEIQIGECFGADELTAMFDESEPSLEELKQTFNVFDRNRDG 133
           +E+  ++EK+++     G+  + I E FG    T M DE +   E++K+ FNVFD+N DG
Sbjct: 40  KELTQMIEKIDV----NGDGCVDIDE-FGELYKTIM-DEEDEEEEDMKEAFNVFDQNGDG 99

Query: 134 FIDAEELHRVLALLGSNKGIFIHDCQRMIARFDHNKHG 172
           FI  +EL  VL+ LG  +G  + DC++MI + D +  G
Sbjct: 100 FITVDELKAVLSSLGLKQGKTLDDCKKMIKKVDVDGDG 131

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038904514.12.8e-5470.00probable calcium-binding protein CML45 [Benincasa hispida][more]
XP_023528818.12.2e-4663.07probable calcium-binding protein CML30 [Cucurbita pepo subsp. pepo][more]
KAG7017701.11.8e-4561.36putative calcium-binding protein CML30, partial [Cucurbita argyrosperma subsp. a... [more]
XP_022983385.11.8e-4561.58probable calcium-binding protein CML30 [Cucurbita maxima][more]
KAG6580956.11.8e-4561.36putative calcium-binding protein CML45, partial [Cucurbita argyrosperma subsp. s... [more]
Match NameE-valueIdentityDescription
Q9MBG51.7e-1746.53Probable calcium-binding protein CML45 OS=Arabidopsis thaliana OX=3702 GN=CML45 ... [more]
Q93Z273.7e-1747.47Probable calcium-binding protein CML46 OS=Arabidopsis thaliana OX=3702 GN=CML46 ... [more]
Q9SRR71.3e-0939.80Calmodulin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=CML3 PE=2 SV=1[more]
Q9ZR021.9e-0837.37Calmodulin-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=CML6 PE=2 SV=1[more]
Q9LNE71.9e-0837.76Calmodulin-like protein 7 OS=Arabidopsis thaliana OX=3702 GN=CML7 PE=2 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainSMARTSM00054efh_1coord: 119..147
e-value: 8.8E-7
score: 38.5
IPR002048EF-hand domainPFAMPF13202EF-hand_5coord: 120..143
e-value: 2.7E-8
score: 32.9
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 115..150
score: 16.159233
IPR002048EF-hand domainCDDcd00051EFhcoord: 119..171
e-value: 7.91645E-10
score: 50.6241
NoneNo IPR availableGENE3D1.10.238.10coord: 88..176
e-value: 6.9E-14
score: 53.8
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 57..171
NoneNo IPR availablePANTHERPTHR10891:SF805CALCIUM-BINDING PROTEIN CML45-RELATEDcoord: 57..171
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 128..140
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 98..171

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0028134.1Lag0028134.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding