Lag0028128 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0028128
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Polyprotein
Location	chr8: 13824755 .. 13828151 (+)
RNA-Seq Expression	Lag0028128
Synteny	Lag0028128

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGTCGAAGGACGACGATTTCGTTCGCCAATGGACCATTTTGCTTGCAATCGTTGCCAAGGCCTTGACCGTCTCCTCAGAAGTTTGCGAAAGCTTCGCGCGGGTTCCTTTCGATCGTAGGTAACTTATGCATCTCTTTCTCGATTCCTTCGAGCTCAGTGTCCGTCACATTGAGCCGCACCTCAATCCTTTTCTGTGTCATTTTTCCTAACCTTCCCAGGGTGAACGTGCTCTAATACCAAGTTGTGAGGTATCCTCACAATGATATATTGATAATCAGAGAAAGAGCCAAAACGATGCAAAAACTCCCAACCAATTCGAGAGGGCTGGTAATCTCTCCTCTCTCTAACTTTCAGCCATCAACGAAAATAAGCATAAAAACAACTAACACAAAAGTAGACTATATATATAAGGTAGGCATAACAGAAAACAATGCCACAGCTGGTCCCCTCCTCGCGCACTGCCTCCTAAACGAAACGGATTTTGCAGGGAATGTTGGAGCTGCATTTCCCTTTTTACCCCTTCGTACATATTGCAAGATAATTGAGGCCTAACAGATTCTTCTTTGTTCAGCTTCACGGTTAGTTGTGGTAATATTTCCATTCAAGAAATCCAATAACATTCCTCCAAAGAGGGACCATACTTTTGAGTTTATGGCATTAGAAGCAAGGCGTCCTAGTCATCTACTAACTACACCACTACCATTTCTTCAATCTTCACGTTTGTGAATAGTTTATGTGAGGTATCTTCCTCACAACTAGTATTAATTCACAAAATAGTTGATTACACAGCAAAGATTACAAGCAAATCCACGCCTCTCGAGGGGGTGGTTCTCTCCTCCTTCGTATCCAAGATACAAACTAACACAAAACATAACATAAGAAGCAACAACAAACACTAAACAACCTTAAATAAAAAAGATAGGCTTACAATAGAACTTTTCCTCCAACAGTTAAAAACGGTCACAGCCCCACTGAAGGTGAAATCCCTTTTTACTCCTTCTAACATAAGTTTTGACTATTGGGGGACTAACAGTTTAGCGTTACCCTGGCCTAAGGGGATGGAGCAGAGTCTGTCGAAGCACGTCTGTAGCCATGGAAGAAGAGACTTTGCAAAAGATAAGGTAAAGCTTTGGTACTTGCAAGTTTCGGAGAGGCGGAAGAGATTGTGGGTTTCTGTGGTCAATGGAGATGGAAAACGTTTTCCTTTCTACCCTGAAACAGTTGTTTGTAGTGTTGGCCATGGTCGCTGGTGTCGAGGGTCATGGTGATGGGTTGGAGAAGGATCGGCGGGGGCTATGGTGGTATGGAGAAGCGGTTTGTCAGGCCACCAATTATTCACACCTATGCTCGTAGGGGCAGGCAAGGGAATTCACCATCGCCGTAATGAAGTTAAAATTATTAGTTTATTTTGTAATCGGTCGTGAATGGATGGTTTAGGCGGTCGATTAGTGGAAAGTTAGTCGGTGTGTGCGACTCGGTTAGGGTGGGATTATATATGTGTATTTTGGGTTAATCTAGGGCATGCTTTTGCTAAGCTTTTGTATTTTCCTTTCTCCTCTAGAATGGATTATAGGGAGATTCACCATCTCAAATCGGTGTTGGCTTGTACTACTTTTGATTGTGAATACAACGTTTTGATTAGAGTCCTAACAACTTGGCATCAGAGCGGTAATCCTGGGAAAGACACGAGGAATGGCGCAGAGACAGTTGGAGGATCGTTTGGCAGAGTCTGAGAAGAACTTAGAAGGGATGAAGGAAAAATTACCTGAGATAGAGAAGTCGGTTGCGGAACTCAATCGAAGTATGGAGAAATTGTTCAATAGTGTAGAAGATCAGAGACAACTTTCTTTAGAGAATCAACAAGCGTTAGCTAATCTCGTCCATGGCGGATTCCAAGTTGGTCCGTCGACTGAAAAAACTCGGTACCTGGGCAAAAGCGTAAGCTACCCGAGGATGAAAGCACTACATCTAGCGGAAGGAACACAGAGGAGAGGAGCAGTTCCACGAGCGTCATAAGTTTAAGAAGGTGGAGATGCCGGCGTTTGATGGCGACCAATCGGACGACTGGCTCTCTAGTGCGGAAAGATACTTAGATATTCATCAGTTAACAGATCAAGGGAAGATAACGGTGACAGCAATCAGCTTCACCGAAGCCGCGCTAAGATGGTACCGATGGGCTGGTTGTAGACAACCTTTTTCTGGATGGAGGGATCTGAAACTCCGAATCCTGGAACGATTTAGACCTTACAGGAGGGATCGTTATGTGCCCATTTTCTTGCGGTGAGACAAATGAAGTCGGTGGCGGAGTACCGAGAACGATTTGAGGCCTTGGCTTCACCTCTACCACATTTGTCTAATGAAGTGTTGGAAAGCCTTGAGGCCATGATGAAAGCAACCCAGCGCATCGAAGATAAGAACTCGGCCCTATTGACTAAAACAGGGTCAGGAGGAACCCGATCGTGGAAACCTTCTCCACCAAGAGTTGTTGGGCCAACCAACGCCCTTGGGCCTTCTTATACACCAAAATTGCTCGAGCCCAACCCAATCAAAACAATTACTCTGCCCAACATTACATCACATCAACGGAAGGAGGCGCCACTTAAGCGTCTGACGGATTCAGAGTTACAATATCGAAGGGAAAAAGGACTGTGCTGCTGATGTGACGAAAAGGAGTTGAAGGTTCTAGTTGTATCTGACGATCAAGACGGGAAGGACGAAGCAATTGGAAATCAAAACCCACGAGAGTGCCAGGTCGAAGAAGTAGAGGAGTCTTCTGCCGAAATGGATACTGCCGAGTTATCCTTAAACACTGTGGTGGGATTTTCATCGCCAGGATCTGTCTCAAGGATGAACATCAACCAGTTAATGCCCGACCATACAGGTACGCTCATGCGCAAAAGGAGGAAATTGAAAGAATGATTCGGGAAATGTTGACTGCCGGAATAATAAGACCCACACGAGTTCGTTCTCAAGTCTGGTTCTGATGGTAAAAAAGAAGGACGGAATTGGCGGTTTTGTGTCGACTACAAGGCGCTCAATGAAGCAACAGTGCCTGATAAGTTCCCTATTCCCATTATAGAGGAACTGTTAGACGAGTTACACGGGGCTCGGGTATTTTTAAAGCTAGACCTTCGGTCGAGATACCACAAAATCCGAGTACACTCCGATGATATCCACAAAACCGCTTTCCGCACGCATGACGACCATTACGAATTTCTTGTAATGCCTTTCGGCTTGACTAACGCACCATACAATTCATCAACCATAGGAATGGGGAACTTATTTGGTACTGTGACCTTATTGAATGCTCAATATTCAATACAGAAACGTCAGCTCCCATCTTTCTTCTTAACCAACAGAATAAGGCTGGAAAATGCACTCGAGCTAGGCTGA

mRNA sequence

ATGACGTCGAAGGACGACGATTTCGTTCGCCAATGGACCATTTTGCTTGCAATCGTTGCCAAGGCCTTGACCGTCTCCTCAGAAGTTTGCGAAAGCTTCGCGCGGGTTCCTTTCGATCGTAGTTTAGCGTTACCCTGGCCTAAGGGGATGGAGCAGAGTCTGTCGAAGCACGTCTGTAGCCATGGAAGAAGAGACTTTGCAAAAGATAAGTGTTGGCCATGGTCGCTGGTGTCGAGGGTCATGGTGATGGGTTGGAGAAGGATCGGCGGGGGCTATGGTGGTATGGAGAAGCGAGCGGTAATCCTGGGAAAGACACGAGGAATGGCGCAGAGACAGTTGGAGGATCGTTTGGCAGAGTCTGAGAAGAACTTAGAAGGGATGAAGGAAAAATTACCTGAGATAGAGAAGTCGGTTGCGGAACTCAATCGAAGTATGGAGAAATTGTTCAATAGTGTAGAAGATCAGAGACAACTTTCTTTAGAGAATCAACAAGCGTTAGCTAATCTCGTCCATGGCGGATTCCAACGGAAGGAACACAGAGGAGAGGAGCAGTTCCACGAGCGTCATAAGTTTAAGAAGGTGGAGATGCCGGCGTTTGATGGCGACCAATCGGACGACTGGCTCTCTAGTGCGGAAAGATACTTAGATATTCATCAGTTAACAGATCAAGGGAAGATAACGGTGACAGCAATCAGCTTCACCGAAGCCGCGCTAAGATGGTACCGATGGGCTGGTTGTAGACAACCTTTTTCTGGATGGAGGGATCTGAAACTCCGAATCCTGGAACGATTTAGACCTTACAGGAGGGATCGTTATGTGCCCATTTTCTTGCGCCTTGAGGCCATGATGAAAGCAACCCAGCGCATCGAAGATAAGAACTCGGCCCTATTGACTAAAACAGGGTCAGGAGGAACCCGATCGTGGAAACCTTCTCCACCAAGAGTTGTTGGGCCAACCAACGCCCTTGGGCCTTCTTATACACCAAAATTGCTCGAGCCCAACCCAATCAAAACAATTACTCTGCCCAACATTACATCACATCAACGGAAGGAGGCGCCACTTAAGCTTGTATCTGACGATCAAGACGGGAAGGACGAAGCAATTGGAAATCAAAACCCACGAGAGTGCCAGGTCGAAGAAGTAGAGGAGTCTTCTGCCGAAATGGATACTGCCGAGTTATCCTTAAACACTGTGGTGGGATTTTCATCGCCAGGATCTGTCTCAAGGATGAACATCAACCAGTTAATGCCCGACCATACAGACCCACACGAGTTCGTTCTCAAGTCTGGTTCTGATGGTAAAAAAGAAGGACGGAATTGGCGGTTTTGTGTCGACTACAAGGCGCTCAATGAAGCAACAGTGCCTGATAAGTTCCCTATTCCCATTATAGAGGAACTGTTAGACGAGTTACACGGGGCTCGGGTATTTTTAAAGCTAGACCTTCGGTCGAGATACCACAAAATCCGAGTACACTCCGATGATATCCACAAAACCGCTTTCCGCACGCATGACGACCATTACGAATTTCTTGTAATGCCTTTCGGCTTGACTAACGCACCATACAATTCATCAACCATAGGAATGGGGAACTTATTTGGTACTGTGACCTTATTGAATGCTCAATATTCAATACAGAAACGTCAGCTCCCATCTTTCTTCTTAACCAACAGAATAAGGCTGGAAAATGCACTCGAGCTAGGCTGA

Coding sequence (CDS)

ATGACGTCGAAGGACGACGATTTCGTTCGCCAATGGACCATTTTGCTTGCAATCGTTGCCAAGGCCTTGACCGTCTCCTCAGAAGTTTGCGAAAGCTTCGCGCGGGTTCCTTTCGATCGTAGTTTAGCGTTACCCTGGCCTAAGGGGATGGAGCAGAGTCTGTCGAAGCACGTCTGTAGCCATGGAAGAAGAGACTTTGCAAAAGATAAGTGTTGGCCATGGTCGCTGGTGTCGAGGGTCATGGTGATGGGTTGGAGAAGGATCGGCGGGGGCTATGGTGGTATGGAGAAGCGAGCGGTAATCCTGGGAAAGACACGAGGAATGGCGCAGAGACAGTTGGAGGATCGTTTGGCAGAGTCTGAGAAGAACTTAGAAGGGATGAAGGAAAAATTACCTGAGATAGAGAAGTCGGTTGCGGAACTCAATCGAAGTATGGAGAAATTGTTCAATAGTGTAGAAGATCAGAGACAACTTTCTTTAGAGAATCAACAAGCGTTAGCTAATCTCGTCCATGGCGGATTCCAACGGAAGGAACACAGAGGAGAGGAGCAGTTCCACGAGCGTCATAAGTTTAAGAAGGTGGAGATGCCGGCGTTTGATGGCGACCAATCGGACGACTGGCTCTCTAGTGCGGAAAGATACTTAGATATTCATCAGTTAACAGATCAAGGGAAGATAACGGTGACAGCAATCAGCTTCACCGAAGCCGCGCTAAGATGGTACCGATGGGCTGGTTGTAGACAACCTTTTTCTGGATGGAGGGATCTGAAACTCCGAATCCTGGAACGATTTAGACCTTACAGGAGGGATCGTTATGTGCCCATTTTCTTGCGCCTTGAGGCCATGATGAAAGCAACCCAGCGCATCGAAGATAAGAACTCGGCCCTATTGACTAAAACAGGGTCAGGAGGAACCCGATCGTGGAAACCTTCTCCACCAAGAGTTGTTGGGCCAACCAACGCCCTTGGGCCTTCTTATACACCAAAATTGCTCGAGCCCAACCCAATCAAAACAATTACTCTGCCCAACATTACATCACATCAACGGAAGGAGGCGCCACTTAAGCTTGTATCTGACGATCAAGACGGGAAGGACGAAGCAATTGGAAATCAAAACCCACGAGAGTGCCAGGTCGAAGAAGTAGAGGAGTCTTCTGCCGAAATGGATACTGCCGAGTTATCCTTAAACACTGTGGTGGGATTTTCATCGCCAGGATCTGTCTCAAGGATGAACATCAACCAGTTAATGCCCGACCATACAGACCCACACGAGTTCGTTCTCAAGTCTGGTTCTGATGGTAAAAAAGAAGGACGGAATTGGCGGTTTTGTGTCGACTACAAGGCGCTCAATGAAGCAACAGTGCCTGATAAGTTCCCTATTCCCATTATAGAGGAACTGTTAGACGAGTTACACGGGGCTCGGGTATTTTTAAAGCTAGACCTTCGGTCGAGATACCACAAAATCCGAGTACACTCCGATGATATCCACAAAACCGCTTTCCGCACGCATGACGACCATTACGAATTTCTTGTAATGCCTTTCGGCTTGACTAACGCACCATACAATTCATCAACCATAGGAATGGGGAACTTATTTGGTACTGTGACCTTATTGAATGCTCAATATTCAATACAGAAACGTCAGCTCCCATCTTTCTTCTTAACCAACAGAATAAGGCTGGAAAATGCACTCGAGCTAGGCTGA

Protein sequence

MTSKDDDFVRQWTILLAIVAKALTVSSEVCESFARVPFDRSLALPWPKGMEQSLSKHVCSHGRRDFAKDKCWPWSLVSRVMVMGWRRIGGGYGGMEKRAVILGKTRGMAQRQLEDRLAESEKNLEGMKEKLPEIEKSVAELNRSMEKLFNSVEDQRQLSLENQQALANLVHGGFQRKEHRGEEQFHERHKFKKVEMPAFDGDQSDDWLSSAERYLDIHQLTDQGKITVTAISFTEAALRWYRWAGCRQPFSGWRDLKLRILERFRPYRRDRYVPIFLRLEAMMKATQRIEDKNSALLTKTGSGGTRSWKPSPPRVVGPTNALGPSYTPKLLEPNPIKTITLPNITSHQRKEAPLKLVSDDQDGKDEAIGNQNPRECQVEEVEESSAEMDTAELSLNTVVGFSSPGSVSRMNINQLMPDHTDPHEFVLKSGSDGKKEGRNWRFCVDYKALNEATVPDKFPIPIIEELLDELHGARVFLKLDLRSRYHKIRVHSDDIHKTAFRTHDDHYEFLVMPFGLTNAPYNSSTIGMGNLFGTVTLLNAQYSIQKRQLPSFFLTNRIRLENALELG

Homology

[Close]

BLAST of Lag0028128 vs. NCBI nr
Match: TYK14310.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 172.9 bits (437), Expect = 7.7e-39
Identity = 149/511 (29.16%), Postives = 205/511 (40.12%), Query Frame = 0


Query: 182 EEQFHERHKFKKVEMPAFDGDQSDDWLSSAERYLDIHQLTDQGKITVTAISFTEAALRWY 241
           +++  +R KFKKVEM  F G   D WL  A+RY  IH L +  K++V  ISF   AL WY
Sbjct: 22  DDEAFDRSKFKKVEMSIFSGTDPDSWLFRADRYFKIHNLIESEKLSVAIISFDGLALDWY 81

Query: 242 RWAGCRQPFSGWRDLKLRILERFRPYRRDRYVPIFLRL--EAMMKATQRIEDK------- 301
           R    R+ F  W DLK ++L RFR  R    V  FL +  E M++  Q   DK       
Sbjct: 82  RSQDERESFQSWDDLKQKMLTRFRTIRDGTLVGRFLTIKQETMVQEYQNRFDKYLAPVAF 141

Query: 302 -NSALLTKTGSGGTRSWKPSPPRVVGPTN---------------------ALGPSY---- 361
             + +L +T   G   W  +   V+ P                        L   Y    
Sbjct: 142 LQTVVLEETFMNGLSPWLKTEVDVLEPCGLAQMMKLALKIENKERVRKEYGLISVYESKF 201

Query: 362 ---TPKLLE-------------PNPIKTITLPNI-TSHQRKEAPLK---------LVSDD 421
               PK  E               P++T+TL  +  +  R+E P K         LV  +
Sbjct: 202 QYNLPKAKEGTETKATTTTTSGNTPMRTVTLKGVMMADNRREGPSKPKEHKELRMLVVRE 261

Query: 422 QDGKDEAIGNQNPRECQVEEV-EESSAEMDTAELSLNTVVGFSSPGSVSRMN-------- 481
              + E IG     E   E V E  + E    ELS+N++VG ++ G++            
Sbjct: 262 NGEEFEIIGEDGGEEVVDENVIEVGAVENLNIELSINSMVGLTNLGTMKVKGKVKDEDLV 321

Query: 482 ------------------------INQLMP----------------------------DH 527
                                   ++  +P                              
Sbjct: 322 VLIDSIKGKGICGKVEVLLGDWKVVDSFLPLELGGVDVILGEDQGFLVECRAIRNTDTQE 381

[Close]

BLAST of Lag0028128 vs. NCBI nr
Match: KAA0035327.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 172.9 bits (437), Expect = 7.7e-39
Identity = 149/511 (29.16%), Postives = 205/511 (40.12%), Query Frame = 0


Query: 182 EEQFHERHKFKKVEMPAFDGDQSDDWLSSAERYLDIHQLTDQGKITVTAISFTEAALRWY 241
           +++  +R KFKKVEM  F G   D WL  A+RY  IH L +  K++V  ISF   AL WY
Sbjct: 22  DDEAFDRSKFKKVEMSIFSGTDPDSWLFRADRYFKIHNLIESEKLSVAIISFDGLALDWY 81

Query: 242 RWAGCRQPFSGWRDLKLRILERFRPYRRDRYVPIFLRL--EAMMKATQRIEDK------- 301
           R    R+ F  W DLK ++L RFR  R    V  FL +  E M++  Q   DK       
Sbjct: 82  RSQDERESFQSWDDLKQKMLTRFRTIRDGTLVGRFLTIKQETMVQEYQNRFDKYLAPVAF 141

Query: 302 -NSALLTKTGSGGTRSWKPSPPRVVGPTN---------------------ALGPSY---- 361
             + +L +T   G   W  +   V+ P                        L   Y    
Sbjct: 142 LQTVVLEETFMNGLSPWLKTEVDVLEPCGLAQMMKLALKIENKERVRKEYGLISVYESKF 201

Query: 362 ---TPKLLE-------------PNPIKTITLPNI-TSHQRKEAPLK---------LVSDD 421
               PK  E               P++T+TL  +  +  R+E P K         LV  +
Sbjct: 202 QYNLPKAKEGTETKATTTTTSGNTPMRTVTLKGVMMADNRREGPSKPKEHKELRMLVVRE 261

Query: 422 QDGKDEAIGNQNPRECQVEEV-EESSAEMDTAELSLNTVVGFSSPGSVSRMN-------- 481
              + E IG     E   E V E  + E    ELS+N++VG ++ G++            
Sbjct: 262 NGEEFEIIGEDGGEEVVDENVIEVGAVENLNIELSINSMVGLTNLGTMKVKGKVKDEDLV 321

Query: 482 ------------------------INQLMP----------------------------DH 527
                                   ++  +P                              
Sbjct: 322 VLIDSIKGKGICGKVEVLLGDWKVVDSFLPLELGGVDVILGEDQGFLVECRAIRNTDTQE 381

[Close]

BLAST of Lag0028128 vs. NCBI nr
Match: KAA0025139.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK23099.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 170.6 bits (431), Expect = 3.8e-38
Identity = 187/722 (25.90%), Postives = 264/722 (36.57%), Query Frame = 0


Query: 97  KRAVILGKTRGMAQ-----RQLEDRLAESEKNLEGMK---EKLPEIEKSVAELNRSMEKL 156
           K+A  +G  +G  Q      Q+      +E+ LE ++   ++LP IE+++A L R++ ++
Sbjct: 28  KKARRMGTRKGDPQLSIIPGQIVTMTKAAEERLETVELEMKRLPMIEENIALLARNIAEM 87

Query: 157 FNSVEDQRQLSLENQQALANLVHGGFQ-----RKEHRG---------------------- 216
            + ++ Q Q     QQ +   + G  +     RK   G                      
Sbjct: 88  NSQIDKQAQ----QQQVILKYIEGIIKDDSSGRKIEEGSTSKVTMAEASSPVTIEEPKLE 147

Query: 217 ----EEQFHERHKFKKVEMPAFDGDQSDDWLSSAERYLDIHQLTDQGKITVTAISFTEAA 276
               EE+  +R KFKKVEMP FDG   D WL  A+RY  IH L+D  K+TV  ISF   A
Sbjct: 148 AKTEEERTLDRSKFKKVEMPVFDGTDPDSWLFRADRYFKIHNLSDSEKLTVAVISFDGPA 207

Query: 277 LRWYRWAGCRQPFSGWRDLKLRILERFRPYRRDRYVPIFLRL--EAMMKATQRIEDK--- 336
           L WYR    R+ F+GW DLK ++L RFR  R    V  FL +  E  ++  +   DK   
Sbjct: 208 LDWYRSQEEREAFAGWDDLKQKMLVRFRATREGTLVGRFLTIKQETTVEEYRNRFDKLLA 267

Query: 337 -----NSALLTKTGSGGTRSWKPSPPRVVGPTN---------------------ALGPSY 396
                 + +L +T   G   W  S    + P                        L  +Y
Sbjct: 268 PVASLPTVVLEETFMNGLNPWLKSEVETLEPNGLAQMMKLALKIENRELVRKECGLISAY 327

Query: 397 TPKLLEPN--------------------PIKTITLPNI-TSHQRKEAPLKLVSD------ 456
             K    N                    P++TITL  + T   R+E P K +SD      
Sbjct: 328 DIKTSHKNQQIKNTGSTATKEGLIGGSWPMRTITLREVATGDNRREGPTKRLSDAEFQAR 387

Query: 457 --------------------------------DQDGKDEAIGNQN--PRECQVEEVEESS 516
                                            + G++  I  +     E  +++VE  +
Sbjct: 388 REKGLCFRCGEKYFAGHRCKTKEHKELRMLVVKEGGEELEIVEEEFFDAETGMKQVEVQN 447

Query: 517 AEMDTAELSLNTVVGFSSPGS-----------------------------VSRMNI---- 521
           AE    ELSLN+VVG ++PG+                             V+++ +    
Sbjct: 448 AENLNIELSLNSVVGLTNPGTMKVKGRMGEEEVVILIDCGATHNFIAEKLVTKLGLTLQK 507

[Close]

BLAST of Lag0028128 vs. NCBI nr
Match: KAA0065906.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa] >TYK15111.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 170.2 bits (430), Expect = 5.0e-38
Identity = 114/350 (32.57%), Postives = 163/350 (46.57%), Query Frame = 0


Query: 182 EEQFHERHKFKKVEMPAFDGDQSDDWLSSAERYLDIHQLTDQGKITVTAISFTEAALRWY 241
           +++  +R KFKKVEMP F+G   D WL  A+RY  IH L +  K+ V  ISF +  L WY
Sbjct: 22  DDKTFDRSKFKKVEMPIFNGTDPDSWLFRADRYFKIHNLIESEKMPVAIISFDDPTLDWY 81

Query: 242 RWAGCRQPFSGWRDLKLRILERFRPYRRDRYVPIFLRL--EAMMKATQRIEDK------- 301
           R    R+ F  W DLK ++L RF+  R    V  FL +  E  ++  +   DK       
Sbjct: 82  RLQDERESFKSWDDLKQKMLTRFQTIRDGTLVGRFLTIKQETTVEEYRNRFDKYLAPVAF 141

Query: 302 -NSALLTKTGSGGTRSWKPSPPRVVGPTNALGPSYTPKLLEPNPIKTITLPNITSHQRKE 361
             + +L +T   G   W  +   V+ P   +                         Q  +
Sbjct: 142 LQTVVLEETFMNGLSPWLKAEVEVLEPRGLV-------------------------QMMK 201

Query: 362 APLKLVSDDQDGKDEAIGNQNPRECQVEEVEESSAEMDTAELSLNTVVGFSSPGSVSRMN 421
             LK+       K E++G                    T+ L +                
Sbjct: 202 LALKI------EKRESVG--------------------TSVLLV---------------- 261

Query: 422 INQLMPDHTDPHEFVLKSGSDGKKEGRNWRFCVDYKALNEATVPDKFPIPIIEELLDELH 481
                                 +K+ R+WRFCVDY+ALN  T+ DKFPIPIIE+L +EL+
Sbjct: 262 ----------------------RKKDRSWRFCVDYRALNNVTMLDKFPIPIIEDLFNELN 282

Query: 482 GARVFLKLDLRSRYHKIRVHSDDIHKTAFRTHDDHYEFLVMPFGLTNAPY 522
           GA +F ++DL++ YH+IR++  D+ KTAFRTH+ HY+FLVMPF LTNAP+
Sbjct: 322 GANMFFEIDLKAGYHQIRMNQVDVEKTAFRTHEGHYKFLVMPFSLTNAPF 282

[Close]

BLAST of Lag0028128 vs. NCBI nr
Match: KAA0045216.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK19246.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 160.2 bits (404), Expect = 5.1e-35
Identity = 178/731 (24.35%), Postives = 262/731 (35.84%), Query Frame = 0


Query: 99  AVILGKTRGMAQRQLEDRLAESEKNLEGMK---EKLPEIEKSVAELNRSMEKLFNSVEDQ 158
           A+++     +   Q+      +++ LE ++   ++LP IE+++A L +S+ ++ + ++ Q
Sbjct: 34  AIVINLWSSIIPGQIISMTKATDERLETVEMEMKRLPMIEENIALLAKSIAEMNSQIDKQ 93

Query: 159 RQLSLENQQALANLVHGGFQ-----RKEHRG--------------------------EEQ 218
            Q     QQ +   + G  +     R+   G                          EE+
Sbjct: 94  AQ----QQQVILKYIEGIVKDDSPGRRTEEGSTSKVTMAEAIYPATAEEPKLEVKTEEER 153

Query: 219 FHERHKFKKVEMPAFDGDQSDDWLSSAERYLDIHQLTDQGKITVTAISFTEAALRWYRWA 278
             +R KFKKVEMP FDG   D WL  A+RY  IH LTD  ++TV  ISF   AL WYR  
Sbjct: 154 SVDRCKFKKVEMPVFDGTDPDSWLFRADRYFKIHNLTDSERLTVAVISFDGLALDWYRSQ 213

Query: 279 GCRQPFSGWRDLKLRILERFRPYRRDRYVPIFLRL--EAMMKATQRIEDK--------NS 338
             R+ F+GW DLKL++L RFR  R    V  FL +  E+ ++  +   DK         +
Sbjct: 214 EEREAFTGWDDLKLKMLVRFRATREGTLVSRFLTIKQESTVEEYRNRFDKLLAPVASLPT 273

Query: 339 ALLTKTGSGGTRSWKPSPPRVVGPTN---------------------ALGPSYTPKLLEP 398
            +L +T   G   W  S    + P                        L  +Y  K    
Sbjct: 274 VVLEETFMNGLNPWLKSEVETLEPNGLAQMIKLALKIENRELVRRECGLVSAYDSKTGHK 333

Query: 399 N--------------------PIKTITLPNI-TSHQRKEAPLKLVSD------------- 458
                                P++TITL  + T   R+E P K +SD             
Sbjct: 334 QQQAKSPIAAATKKGTTSGSWPMRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCF 393

Query: 459 -------------------------DQDGKDEAIGNQN--PRECQVEEVEESSAEMDTAE 518
                                     + G++  I  +     E ++++VE  + E    E
Sbjct: 394 RCGKKYFAGHWCKSKEHKELRMLVVKEGGEELEIVEEEFFDAETEMKQVEVQNVENLNIE 453

Query: 519 LSLNTVVGFSSPGSV--------------------------------------------- 521
           LS+N+VVG ++PG++                                             
Sbjct: 454 LSINSVVGLNNPGTMKVKGKVGEEEVVILIDCGATHNFIAEDLVTRLGLTLQETPNYGVI 513

[Close]

BLAST of Lag0028128 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.9e-17
Identity = 44/87 (50.57%), Postives = 60/87 (68.97%), Query Frame = 0


Query: 434 KKEGRNWRFCVDYKALNEATVPDKFPIPIIEELLDELHGARVFLKLDLRSRYHKIRVHSD 493
           KKEG   R  VDYK LN+   P+ +P+P+IE+LL ++ G+ +F KLDL+S YH IRV   
Sbjct: 457 KKEG-TLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKG 516

Query: 494 DIHKTAFRTHDDHYEFLVMPFGLTNAP 521
           D HK AFR     +E+LVMP+G++ AP
Sbjct: 517 DEHKLAFRCPRGVFEYLVMPYGISTAP 542

[Close]

BLAST of Lag0028128 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.9e-17
Identity = 44/87 (50.57%), Postives = 60/87 (68.97%), Query Frame = 0


Query: 434 KKEGRNWRFCVDYKALNEATVPDKFPIPIIEELLDELHGARVFLKLDLRSRYHKIRVHSD 493
           KKEG   R  VDYK LN+   P+ +P+P+IE+LL ++ G+ +F KLDL+S YH IRV   
Sbjct: 457 KKEG-TLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKG 516

Query: 494 DIHKTAFRTHDDHYEFLVMPFGLTNAP 521
           D HK AFR     +E+LVMP+G++ AP
Sbjct: 517 DEHKLAFRCPRGVFEYLVMPYGISTAP 542

[Close]

BLAST of Lag0028128 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.9e-17
Identity = 44/87 (50.57%), Postives = 60/87 (68.97%), Query Frame = 0


Query: 434 KKEGRNWRFCVDYKALNEATVPDKFPIPIIEELLDELHGARVFLKLDLRSRYHKIRVHSD 493
           KKEG   R  VDYK LN+   P+ +P+P+IE+LL ++ G+ +F KLDL+S YH IRV   
Sbjct: 457 KKEG-TLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKG 516

Query: 494 DIHKTAFRTHDDHYEFLVMPFGLTNAP 521
           D HK AFR     +E+LVMP+G++ AP
Sbjct: 517 DEHKLAFRCPRGVFEYLVMPYGISTAP 542

[Close]

BLAST of Lag0028128 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.9e-17
Identity = 44/87 (50.57%), Postives = 60/87 (68.97%), Query Frame = 0


Query: 434 KKEGRNWRFCVDYKALNEATVPDKFPIPIIEELLDELHGARVFLKLDLRSRYHKIRVHSD 493
           KKEG   R  VDYK LN+   P+ +P+P+IE+LL ++ G+ +F KLDL+S YH IRV   
Sbjct: 457 KKEG-TLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKG 516

Query: 494 DIHKTAFRTHDDHYEFLVMPFGLTNAP 521
           D HK AFR     +E+LVMP+G++ AP
Sbjct: 517 DEHKLAFRCPRGVFEYLVMPYGISTAP 542

[Close]

BLAST of Lag0028128 vs. ExPASy Swiss-Prot
Match: P0CT37 (Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-4 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.9e-17
Identity = 44/87 (50.57%), Postives = 60/87 (68.97%), Query Frame = 0


Query: 434 KKEGRNWRFCVDYKALNEATVPDKFPIPIIEELLDELHGARVFLKLDLRSRYHKIRVHSD 493
           KKEG   R  VDYK LN+   P+ +P+P+IE+LL ++ G+ +F KLDL+S YH IRV   
Sbjct: 457 KKEG-TLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKG 516

Query: 494 DIHKTAFRTHDDHYEFLVMPFGLTNAP 521
           D HK AFR     +E+LVMP+G++ AP
Sbjct: 517 DEHKLAFRCPRGVFEYLVMPYGISTAP 542

[Close]

BLAST of Lag0028128 vs. ExPASy TrEMBL
Match: A0A5A7T158 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold228G001280 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.7e-39
Identity = 149/511 (29.16%), Postives = 205/511 (40.12%), Query Frame = 0


Query: 182 EEQFHERHKFKKVEMPAFDGDQSDDWLSSAERYLDIHQLTDQGKITVTAISFTEAALRWY 241
           +++  +R KFKKVEM  F G   D WL  A+RY  IH L +  K++V  ISF   AL WY
Sbjct: 22  DDEAFDRSKFKKVEMSIFSGTDPDSWLFRADRYFKIHNLIESEKLSVAIISFDGLALDWY 81

Query: 242 RWAGCRQPFSGWRDLKLRILERFRPYRRDRYVPIFLRL--EAMMKATQRIEDK------- 301
           R    R+ F  W DLK ++L RFR  R    V  FL +  E M++  Q   DK       
Sbjct: 82  RSQDERESFQSWDDLKQKMLTRFRTIRDGTLVGRFLTIKQETMVQEYQNRFDKYLAPVAF 141

Query: 302 -NSALLTKTGSGGTRSWKPSPPRVVGPTN---------------------ALGPSY---- 361
             + +L +T   G   W  +   V+ P                        L   Y    
Sbjct: 142 LQTVVLEETFMNGLSPWLKTEVDVLEPCGLAQMMKLALKIENKERVRKEYGLISVYESKF 201

Query: 362 ---TPKLLE-------------PNPIKTITLPNI-TSHQRKEAPLK---------LVSDD 421
               PK  E               P++T+TL  +  +  R+E P K         LV  +
Sbjct: 202 QYNLPKAKEGTETKATTTTTSGNTPMRTVTLKGVMMADNRREGPSKPKEHKELRMLVVRE 261

Query: 422 QDGKDEAIGNQNPRECQVEEV-EESSAEMDTAELSLNTVVGFSSPGSVSRMN-------- 481
              + E IG     E   E V E  + E    ELS+N++VG ++ G++            
Sbjct: 262 NGEEFEIIGEDGGEEVVDENVIEVGAVENLNIELSINSMVGLTNLGTMKVKGKVKDEDLV 321

Query: 482 ------------------------INQLMP----------------------------DH 527
                                   ++  +P                              
Sbjct: 322 VLIDSIKGKGICGKVEVLLGDWKVVDSFLPLELGGVDVILGEDQGFLVECRAIRNTDTQE 381

[Close]

BLAST of Lag0028128 vs. ExPASy TrEMBL
Match: A0A5D3CSC2 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G00360 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.7e-39
Identity = 149/511 (29.16%), Postives = 205/511 (40.12%), Query Frame = 0


Query: 182 EEQFHERHKFKKVEMPAFDGDQSDDWLSSAERYLDIHQLTDQGKITVTAISFTEAALRWY 241
           +++  +R KFKKVEM  F G   D WL  A+RY  IH L +  K++V  ISF   AL WY
Sbjct: 22  DDEAFDRSKFKKVEMSIFSGTDPDSWLFRADRYFKIHNLIESEKLSVAIISFDGLALDWY 81

Query: 242 RWAGCRQPFSGWRDLKLRILERFRPYRRDRYVPIFLRL--EAMMKATQRIEDK------- 301
           R    R+ F  W DLK ++L RFR  R    V  FL +  E M++  Q   DK       
Sbjct: 82  RSQDERESFQSWDDLKQKMLTRFRTIRDGTLVGRFLTIKQETMVQEYQNRFDKYLAPVAF 141

Query: 302 -NSALLTKTGSGGTRSWKPSPPRVVGPTN---------------------ALGPSY---- 361
             + +L +T   G   W  +   V+ P                        L   Y    
Sbjct: 142 LQTVVLEETFMNGLSPWLKTEVDVLEPCGLAQMMKLALKIENKERVRKEYGLISVYESKF 201

Query: 362 ---TPKLLE-------------PNPIKTITLPNI-TSHQRKEAPLK---------LVSDD 421
               PK  E               P++T+TL  +  +  R+E P K         LV  +
Sbjct: 202 QYNLPKAKEGTETKATTTTTSGNTPMRTVTLKGVMMADNRREGPSKPKEHKELRMLVVRE 261

Query: 422 QDGKDEAIGNQNPRECQVEEV-EESSAEMDTAELSLNTVVGFSSPGSVSRMN-------- 481
              + E IG     E   E V E  + E    ELS+N++VG ++ G++            
Sbjct: 262 NGEEFEIIGEDGGEEVVDENVIEVGAVENLNIELSINSMVGLTNLGTMKVKGKVKDEDLV 321

Query: 482 ------------------------INQLMP----------------------------DH 527
                                   ++  +P                              
Sbjct: 322 VLIDSIKGKGICGKVEVLLGDWKVVDSFLPLELGGVDVILGEDQGFLVECRAIRNTDTQE 381

[Close]

BLAST of Lag0028128 vs. ExPASy TrEMBL
Match: A0A5D3DIM6 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G00810 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.8e-38
Identity = 187/722 (25.90%), Postives = 264/722 (36.57%), Query Frame = 0


Query: 97  KRAVILGKTRGMAQ-----RQLEDRLAESEKNLEGMK---EKLPEIEKSVAELNRSMEKL 156
           K+A  +G  +G  Q      Q+      +E+ LE ++   ++LP IE+++A L R++ ++
Sbjct: 28  KKARRMGTRKGDPQLSIIPGQIVTMTKAAEERLETVELEMKRLPMIEENIALLARNIAEM 87

Query: 157 FNSVEDQRQLSLENQQALANLVHGGFQ-----RKEHRG---------------------- 216
            + ++ Q Q     QQ +   + G  +     RK   G                      
Sbjct: 88  NSQIDKQAQ----QQQVILKYIEGIIKDDSSGRKIEEGSTSKVTMAEASSPVTIEEPKLE 147

Query: 217 ----EEQFHERHKFKKVEMPAFDGDQSDDWLSSAERYLDIHQLTDQGKITVTAISFTEAA 276
               EE+  +R KFKKVEMP FDG   D WL  A+RY  IH L+D  K+TV  ISF   A
Sbjct: 148 AKTEEERTLDRSKFKKVEMPVFDGTDPDSWLFRADRYFKIHNLSDSEKLTVAVISFDGPA 207

Query: 277 LRWYRWAGCRQPFSGWRDLKLRILERFRPYRRDRYVPIFLRL--EAMMKATQRIEDK--- 336
           L WYR    R+ F+GW DLK ++L RFR  R    V  FL +  E  ++  +   DK   
Sbjct: 208 LDWYRSQEEREAFAGWDDLKQKMLVRFRATREGTLVGRFLTIKQETTVEEYRNRFDKLLA 267

Query: 337 -----NSALLTKTGSGGTRSWKPSPPRVVGPTN---------------------ALGPSY 396
                 + +L +T   G   W  S    + P                        L  +Y
Sbjct: 268 PVASLPTVVLEETFMNGLNPWLKSEVETLEPNGLAQMMKLALKIENRELVRKECGLISAY 327

Query: 397 TPKLLEPN--------------------PIKTITLPNI-TSHQRKEAPLKLVSD------ 456
             K    N                    P++TITL  + T   R+E P K +SD      
Sbjct: 328 DIKTSHKNQQIKNTGSTATKEGLIGGSWPMRTITLREVATGDNRREGPTKRLSDAEFQAR 387

Query: 457 --------------------------------DQDGKDEAIGNQN--PRECQVEEVEESS 516
                                            + G++  I  +     E  +++VE  +
Sbjct: 388 REKGLCFRCGEKYFAGHRCKTKEHKELRMLVVKEGGEELEIVEEEFFDAETGMKQVEVQN 447

Query: 517 AEMDTAELSLNTVVGFSSPGS-----------------------------VSRMNI---- 521
           AE    ELSLN+VVG ++PG+                             V+++ +    
Sbjct: 448 AENLNIELSLNSVVGLTNPGTMKVKGRMGEEEVVILIDCGATHNFIAEKLVTKLGLTLQK 507

[Close]

BLAST of Lag0028128 vs. ExPASy TrEMBL
Match: A0A5A7VHR5 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00400 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.4e-38
Identity = 114/350 (32.57%), Postives = 163/350 (46.57%), Query Frame = 0


Query: 182 EEQFHERHKFKKVEMPAFDGDQSDDWLSSAERYLDIHQLTDQGKITVTAISFTEAALRWY 241
           +++  +R KFKKVEMP F+G   D WL  A+RY  IH L +  K+ V  ISF +  L WY
Sbjct: 22  DDKTFDRSKFKKVEMPIFNGTDPDSWLFRADRYFKIHNLIESEKMPVAIISFDDPTLDWY 81

Query: 242 RWAGCRQPFSGWRDLKLRILERFRPYRRDRYVPIFLRL--EAMMKATQRIEDK------- 301
           R    R+ F  W DLK ++L RF+  R    V  FL +  E  ++  +   DK       
Sbjct: 82  RLQDERESFKSWDDLKQKMLTRFQTIRDGTLVGRFLTIKQETTVEEYRNRFDKYLAPVAF 141

Query: 302 -NSALLTKTGSGGTRSWKPSPPRVVGPTNALGPSYTPKLLEPNPIKTITLPNITSHQRKE 361
             + +L +T   G   W  +   V+ P   +                         Q  +
Sbjct: 142 LQTVVLEETFMNGLSPWLKAEVEVLEPRGLV-------------------------QMMK 201

Query: 362 APLKLVSDDQDGKDEAIGNQNPRECQVEEVEESSAEMDTAELSLNTVVGFSSPGSVSRMN 421
             LK+       K E++G                    T+ L +                
Sbjct: 202 LALKI------EKRESVG--------------------TSVLLV---------------- 261

Query: 422 INQLMPDHTDPHEFVLKSGSDGKKEGRNWRFCVDYKALNEATVPDKFPIPIIEELLDELH 481
                                 +K+ R+WRFCVDY+ALN  T+ DKFPIPIIE+L +EL+
Sbjct: 262 ----------------------RKKDRSWRFCVDYRALNNVTMLDKFPIPIIEDLFNELN 282

Query: 482 GARVFLKLDLRSRYHKIRVHSDDIHKTAFRTHDDHYEFLVMPFGLTNAPY 522
           GA +F ++DL++ YH+IR++  D+ KTAFRTH+ HY+FLVMPF LTNAP+
Sbjct: 322 GANMFFEIDLKAGYHQIRMNQVDVEKTAFRTHEGHYKFLVMPFSLTNAPF 282

[Close]

BLAST of Lag0028128 vs. ExPASy TrEMBL
Match: A0A2N9EGK1 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS1561 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 7.7e-37
Identity = 126/430 (29.30%), Postives = 198/430 (46.05%), Query Frame = 0


Query: 108 MAQRQLEDRLAESEKNLEGMKEKLPEIEKSVAELNRSMEKLFNSVEDQRQLSLENQQALA 167
           ++   L  +L E  + + G+++ +  + ++VA+LNR              L+  N     
Sbjct: 18  ISTHSLHCKLEEYHEEISGVRDGIIALTEAVAQLNRDR-------STHNNLNENNDGRSV 77

Query: 168 NLVHGGFQRKEHRGEEQFHE---RHKFKKVEMPAFDGDQSDDWLSSAERYLDIHQLTDQG 227
           N  HGGF    + G    +    + +F  ++ P F+GD     +  A+++        Q 
Sbjct: 78  NRNHGGFNGNNNEGNNGVNHDGIQPRFSWLDFPRFNGDDPMGGIYKADQFFRYQGTIAQE 137

Query: 228 KITVTAISFTEAALRWYRWAGCRQPFSGWRDLKLRILERFRPYRRDRYVPIFLRLEAMMK 287
           K+ + +    + AL+WY+W    QP   W +    +  RF P   + +     RL    K
Sbjct: 138 KVLLASFHLQDDALQWYKWYARSQPNVSWEEFIQALCVRFGPSDYEDFDEALSRLHQTNK 197

Query: 288 ATQRIEDKNSALLTKTGSGGTRSWKPSPPRVVGPTNALGPSYTPKLLEPNPIKTITLPNI 347
             +  + +   L  +      + W         P  AL   Y   L E          +I
Sbjct: 198 VCE-YQGQFERLAVR-----VQDW---------PEKALVGCYIEGLKE----------DI 257

Query: 348 TSHQRKEAPLKLVSDDQDGKDEAIGNQNPRECQVEEVEESSAEMDTAELSLNTVVGFSSP 407
            +  +   P  L+     G+ E+  N+  +    EE  E++ +    E+SL+T+ G    
Sbjct: 258 RAEVKLFRPTTLLHATV-GEHESESNETAK----EEANETTLK---PEISLHTLTG---A 317

Query: 408 GSVSRMNINQLMPDHTDPHEFVLKSGSDGKKEGRNWRFCVDYKALNEATVPDKFPIPIIE 467
            ++  M +                     KK+  +WRFCVDYKALN   + D++PIP+I+
Sbjct: 318 DTLDTMTV---------------------KKKDGSWRFCVDYKALNHVMIKDRYPIPVID 377

Query: 468 ELLDELHGARVFLKLDLRSRYHKIRVHSDDIHKTAFRTHDDHYEFLVMPFGLTNAPYNSS 527
           ELLDELHG   F KLDL+S YH+IRV  +D+HKTAFRTHD HYE LVMPFGLTNAP    
Sbjct: 378 ELLDELHGVAYFTKLDLKSGYHQIRVRPEDVHKTAFRTHDSHYESLVMPFGLTNAPATFQ 382

Query: 528 TIGMGNLFGT 535
           ++ M ++F T
Sbjct: 438 SL-MNDIFRT 382

[Close]

BLAST of Lag0028128 vs. TAIR 10
Match: AT1G67020.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; Has 72 Blast hits to 72 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 54.7 bits (130), Expect = 2.8e-07
Identity = 31/125 (24.80%), Postives = 53/125 (42.40%), Query Frame = 0


Query: 192 KKVEMPAFDGDQSDDWLSSAERYLDIHQLTDQGKITVTAISFTEAALRWYRWAGCRQPFS 251
           +++EMP FDG    +W S  ER+  + +  D  K+ + A+S    AL+W+        F 
Sbjct: 108 RRIEMPVFDGSGVYEWFSKVERFFRVGRYQDSDKLDLVALSLEGVALKWFLREMSTLEFR 167

Query: 252 GWRDLKLRILERFRPYRRDRYVPIFLRLEAMMKATQRIEDKNSALLTKTGSGGTRSWKPS 311
            W   + R+L RF P +      + +    +       E + +  L +      R  K S
Sbjct: 168 DWNSFEQRLLARFDPVKIHSSPEVLMPTTLIHVVAHETESRCTEELIEEDESSVR--KKS 227

Query: 312 PPRVV 317
            P +V
Sbjct: 228 NPEIV 230

The following BLAST results are available for this feature:

BLAST of Lag0028128 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK14310.1	7.7e-39	29.16	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0035327.1	7.7e-39	29.16	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0025139.1	3.8e-38	25.90	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK23099.1 Tran...	[more]
KAA0065906.1	5.0e-38	32.57	transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa] >TYK15111.1 t...	[more]
KAA0045216.1	5.1e-35	24.35	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK19246.1 Ty3/gyp...	[more]

BLAST of Lag0028128 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0CT41	2.9e-17	50.57	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	2.9e-17	50.57	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	2.9e-17	50.57	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	2.9e-17	50.57	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT37	2.9e-17	50.57	Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Lag0028128 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T158	3.7e-39	29.16	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3CSC2	3.7e-39	29.16	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DIM6	1.8e-38	25.90	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7VHR5	2.4e-38	32.57	Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A2N9EGK1	7.7e-37	29.30	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS1561 PE=4 SV=1	[more]

BLAST of Lag0028128 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67020.1	2.8e-07	24.80	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 110..158
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 434..518 e-value: 3.8E-34 score: 119.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 356..376
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 297..329
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 434..520
None	No IPR available	PANTHER	PTHR24559:SF319	SUBFAMILY NOT NAMED	coord: 434..520
None	No IPR available	CDD	cd01647	RT_LTR	coord: 434..520 e-value: 6.78788E-38 score: 135.801
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 458..522 e-value: 3.8E-34 score: 119.8
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 434..523 e-value: 6.5E-9 score: 35.6
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 434..521

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0028128.1	Lag0028128.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003964	RNA-directed DNA polymerase activity