Lag0028110 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0028110
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr8: 13355832 .. 13356547 (-)
RNA-Seq ExpressionLag0028110
SyntenyLag0028110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAAAGGTTATGGAGTTGGCCTTAGTTCCCTTTGACCCTGAGATAGAGAGGACATATAATAAACTTCAAAGGGAGAATCAAGAAAAACTCATCCAAATGGCCAATCCTAATCCTGAGGAGCCTAAGCCAATTAGGGACTATCTTCATCCGGTCTTTCAAGAGCAACAATTGGAGATTGTCTATGCCCCGATCAATGCGAATAATTTTGAGCTGAAAAGTGGTCTCATTCAAATAGCTCGAGATTGTGATTTTAGAGGACCCAAACTCACACTTGAAATCCTTTTTAGATATCTGTGGGACGGTAAAGTTAAATGGAGTGACTTGATAGCGCCCAAAACGTTGTATCTTATCACTTATTATTTGATGTTGTTAGTGTGCATTTGATGGTTTAAATGTCTACTTTACAGCGATTCGAGCACAATAGGGCAATTAGGCCTATATTTTGTTTTGGCGCTAACTCGGAGTTTTTATGGTGTTTTCGAGCTATTTTGGAGTCCCCGAGATGACGTGAGACTACAGGCATCGGCCGGAACGCTTGGACATCATTTTTGGAGCCAAAAGAATCAAGCAAGAAATTGCAATTTTTGGAGCAACCCGAGAGCAGGCGTCTGGATGCCATGATGGCAGCGTCGAGACGCCAACGCGAGTCTCAACCCACTGATGGAAGACCTAGCATCGAGACGCTGGCCTTGGTGTCTCGCTGCCAACGTTAA

mRNA sequence

ATGCGAAAGGTTATGGAGTTGGCCTTAGTTCCCTTTGACCCTGAGATAGAGAGGACATATAATAAACTTCAAAGGGAGAATCAAGAAAAACTCATCCAAATGGCCAATCCTAATCCTGAGGAGCCTAAGCCAATTAGGGACTATCTTCATCCGGTCTTTCAAGAGCAACAATTGGAGATTGTCTATGCCCCGATCAATGCGAATAATTTTGAGCTGAAAAGTGGTCTCATTCAAATAGCTCGAGATTGTGATTTTAGAGGACCCAAACTCACACTTGAAATCCTTTTTAGATATCTGTGGGACGGCATCGGCCGGAACGCTTGGACATCATTTTTGGAGCCAAAAGAATCAAGCAAGAAATTGCAATTTTTGGAGCAACCCGAGAGCAGGCGTCTGGATGCCATGATGGCAGCGTCGAGACGCCAACGCGAGTCTCAACCCACTGATGGAAGACCTAGCATCGAGACGCTGGCCTTGGTGTCTCGCTGCCAACGTTAA

Coding sequence (CDS)

ATGCGAAAGGTTATGGAGTTGGCCTTAGTTCCCTTTGACCCTGAGATAGAGAGGACATATAATAAACTTCAAAGGGAGAATCAAGAAAAACTCATCCAAATGGCCAATCCTAATCCTGAGGAGCCTAAGCCAATTAGGGACTATCTTCATCCGGTCTTTCAAGAGCAACAATTGGAGATTGTCTATGCCCCGATCAATGCGAATAATTTTGAGCTGAAAAGTGGTCTCATTCAAATAGCTCGAGATTGTGATTTTAGAGGACCCAAACTCACACTTGAAATCCTTTTTAGATATCTGTGGGACGGCATCGGCCGGAACGCTTGGACATCATTTTTGGAGCCAAAAGAATCAAGCAAGAAATTGCAATTTTTGGAGCAACCCGAGAGCAGGCGTCTGGATGCCATGATGGCAGCGTCGAGACGCCAACGCGAGTCTCAACCCACTGATGGAAGACCTAGCATCGAGACGCTGGCCTTGGTGTCTCGCTGCCAACGTTAA

Protein sequence

MRKVMELALVPFDPEIERTYNKLQRENQEKLIQMANPNPEEPKPIRDYLHPVFQEQQLEIVYAPINANNFELKSGLIQIARDCDFRGPKLTLEILFRYLWDGIGRNAWTSFLEPKESSKKLQFLEQPESRRLDAMMAASRRQRESQPTDGRPSIETLALVSRCQR
Homology
BLAST of Lag0028110 vs. NCBI nr
Match: WP_217833153.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-09
Identity = 40/79 (50.63%), Postives = 48/79 (60.76%), Query Frame = 0

Query: 9  LVPFDPEIERTYNKLQRENQEKLIQMANPNPEEPKPIRDYLHPVFQEQQLEIVYAPINAN 68
          L+P DPEI+RTY +  R    +  +MA    E PK IRDY  P     Q  I+  PIN N
Sbjct: 24 LLPLDPEIDRTYRRNLRALLNQTTEMAE---EIPKAIRDYFQPTLPASQPGIMNVPINVN 83

Query: 69 NFELKSGLIQIARDCDFRG 88
          NFELK GLIQ+AR+  FRG
Sbjct: 84 NFELKPGLIQMARELAFRG 99

BLAST of Lag0028110 vs. NCBI nr
Match: KAG7990634.1 (hypothetical protein I3843_02G035100 [Carya illinoinensis])

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-07
Identity = 37/91 (40.66%), Postives = 51/91 (56.04%), Query Frame = 0

Query: 1  MRKVMELALVPFDPEIERTYNKLQRENQEKLIQMANPNPEE-PKPIRDYLHPVFQEQQLE 60
          MR+     ++P DPEIERT   L+R    K++ MA  + E  P+ ++DY+ PV       
Sbjct: 1  MRRARSRDIIPVDPEIERTLRSLRR---NKILAMAEEDREVLPRTLKDYVRPVVNGNYSS 60

Query: 61 IVYAPINANNFELKSGLIQIARDCDFRGPKL 91
          I+  PINANNFELK  LI + +   F G  L
Sbjct: 61 IMRQPINANNFELKPALISMVQQAQFSGSPL 88

BLAST of Lag0028110 vs. NCBI nr
Match: XP_038906874.1 (uncharacterized protein LOC120092758 [Benincasa hispida])

HSP 1 Score: 66.2 bits (160), Expect = 2.9e-07
Identity = 35/87 (40.23%), Postives = 51/87 (58.62%), Query Frame = 0

Query: 1   MRKVMELALVPFDPEIERTYNKLQRENQEKLIQMANPNPEEPKPIRDYLHPVFQEQQLEI 60
           MR++ +  LV +DPE ER   ++ R+ + +   +     E  + IRDY  PV    Q+ I
Sbjct: 47  MRRIQQTELVTYDPEFERILKRVTRKRRVE-FDVLGDQGEAVRTIRDYFEPVVPTTQMGI 106

Query: 61  VYAPINANNFELKSGLIQIARDCDFRG 88
              PINA+NFELK GLIQ+A+D  + G
Sbjct: 107 AETPINASNFELKLGLIQMAQDLCYTG 132

BLAST of Lag0028110 vs. NCBI nr
Match: CAB4278097.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 62.4 bits (150), Expect = 4.3e-06
Identity = 33/80 (41.25%), Postives = 48/80 (60.00%), Query Frame = 0

Query: 2  RKVMELALVPFDPEIERTYNKLQRENQEKLIQMANPNP--EEPKPIRDYLHPVFQEQQLE 61
          R+   L L+P DPEIERT +KL +  + K + +  P+P  EEPKP+RDY  P        
Sbjct: 5  RRSQSLTLIPLDPEIERTLHKLNKLKRGKDVILEKPSPMAEEPKPVRDYDVPSVVASPSS 64

Query: 62 IVYAPINANNFELKSGLIQI 80
          I +  I+ANNFE++  +I +
Sbjct: 65 IRHRTIDANNFEIRLAIISM 84

BLAST of Lag0028110 vs. NCBI nr
Match: KAF5458895.1 (hypothetical protein F2P56_022888 [Juglans regia])

HSP 1 Score: 59.7 bits (143), Expect = 2.8e-05
Identity = 34/91 (37.36%), Postives = 52/91 (57.14%), Query Frame = 0

Query: 1  MRKVMELALVPFDPEIERTYNKLQRENQEKLIQMANPNPE-EPKPIRDYLHPVFQEQQLE 60
          MR+     + PFDPEIERT   L+ +  +K++ MA+   + + + ++DY+ PV  +    
Sbjct: 1  MRRARARDITPFDPEIERT---LRSQRNKKVLAMADGQHDVQSRTLKDYVCPVVNDNYSS 60

Query: 61 IVYAPINANNFELKSGLIQIARDCDFRGPKL 91
          I    INANNFELK  LI++ +   F G  L
Sbjct: 61 IRCQTINANNFELKPALIRMVQQTQFSGSPL 88

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
WP_217833153.11.4e-0950.63retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 70... [more]
KAG7990634.11.3e-0740.66hypothetical protein I3843_02G035100 [Carya illinoinensis][more]
XP_038906874.12.9e-0740.23uncharacterized protein LOC120092758 [Benincasa hispida][more]
CAB4278097.14.3e-0641.25unnamed protein product [Prunus armeniaca][more]
KAF5458895.12.8e-0537.36hypothetical protein F2P56_022888 [Juglans regia][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0028110.1Lag0028110.1mRNA