Lag0028107 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0028107
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr8: 13329045 .. 13330271 (+)
RNA-Seq ExpressionLag0028107
SyntenyLag0028107
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACGCATGGCCGGGAGGACGCTCGGGTTCTCTGTTCCAGGAACAAGTGTACGGAACGGTCTGGAGGAGGCTAATTGTCCCTGTTCCACGATCCAGTGTACGGACGGTCAAGGGGACGTTGATTTTCTCGGCTCCTCGGTCCAGTTTACGCATGGCTGGGAAGACGCTCGGGGTCCATTTTCCACGATCAAGTTACCGAACGGTCGGGAGGACGCTCATTGTCCTTGTTCCACAATCTGGTGTACGGACGGTCGGGGAGACGTTGATTTTCTCGGCTCCTCTGTCCAGTGTACGCATGGTCGGGAGGACGCTCGGGATCTTTGTTCCACGAACAAGTGTACGGAACGGTTGGGAGGACACTCATTGTCCTTGTTCCACTCTTCGATGTACGGACGGTCGGGGGGACGTAAATTTTCGTGTTACCTGTTCCACGAACAAGTTTACAGAACGGTCGGGAGGACGCTCATTGTCCTTATTCCACTCTCTGGTGTAGGGACGGTCGGGGGATGTTGATTTTCTCGGCACCTCGGTCCAGTTTACGCATGGCCGGGAAGACGCTTGGGGTCTATTTTCCACGATCAAGTTACGGAACGGTCGGGAGGACGCTCATTGTCCTTGTTCCACAATCTGGTGTACGGACGGTCGGTTGGACGTTGATTTTCTCGGCTCCTCTGTCCAATGTACGCATGGACGGGAGGACGTTGGGGGTCCCTTTTCCACGATCAAGTGTACGAAACGGTCGGGAGGACGCTCATTGTCCTTGCACCATGATCCGATGTACGGACGGTCAGGGGGACGTTGATTTTCTAGGCTTCTCGGTCCAGTGTACGCATGGTCGAGAGGACGCTCGGGTTCTTTGTTCCACGAACAAGTGTATGGAACAGTCGGGAGGACACTCATTGTCCTTGTTCCACTCTCCGGTGTAGGGACGGTCGGGGGGACGTTGATTTTCTCGGCTCCTCGGTCCAATGTACGCATGGACGGGAGGACGTTGGGGGTCTCTTTTCCACGATCAAGTGTACGGAACGGTCGGGAGAACGCTCATTGTCCCTTTTCCACGATCTGGTGTACGGACGGTCGCTGGACGTTGAATTTCTCGGCTCCTCGGTCTAGTGTACGCATAGCCGAGAGAACGCTCGGGTTACCTGTTCCACGAACAAGTTTACAGAACGGTCGGGAGGACACACATTGTCCTTATTCCACTCCCCGGTGTATGGACGGTTAG

mRNA sequence

ATGTACGCATGGCCGGGAGGACGCTCGGGTTCTCTGTTCCAGGAACAAGTGTACGGAACGGTCTGGAGGAGGCTAATTGTCCCTGTTCCACGATCCAGTGTACGGACGGTCAAGGGGACGTTGATTTTCTCGGCTCCTCGGTCCAGTTTACGCATGGCTGGGAAGACGCTCGGGGTCCATTTTCCACGATCAAGTTACCGAACGGTCGGGAGGACGCTCATTGTCCTTGTTCCACAATCTGGTGTACGGACGGTCGGGGAGACGTTGATTTTCTCGGCTCCTCTGTCCAGTGTACGCATGGTCGGGAGGACGCTCGGGATCTTTGTTCCACGAACAAGTGGACGGTCGGGGGATGTTGATTTTCTCGGCACCTCGGTCCAGTTTACGCATGGCCGGGAAGACGCTTGGGGTCTATTTTCCACGATCAAGTTACGGAACGGTCGGGAGGACGCTCATTGTCCTTGTTCCACAATCTGGTGTACGGACGGTCGGTTGGACGTTGATTTTCTCGGCTCCTCTGTCCAATTGTACGCATGGTCGAGAGGACGCTCGGGTTCTTTGTTCCACGAACAAGTGTATGGAACAGTCGGGAGGACACTCATTGTCCTTGTTCCACTCTCCGGTGTAGGGACGGTCGGGGGGACGTTGATTTTCTCGGCTCCTCGGTCCAATGTACGCATGGACGGGAGGACGTTGGGGGTCTCTTTTCCACGATCAAGTGTACGGAACGGTCGGGAGAACGCTCATTGTCCCTTTTCCACGATCTGGTGTACGGACGGTCGCTGGACGTTGAATTTCTCGGCTCCTCGGTCTAGTGTACGCATAGCCGAGAGAACGCTCGGGTTACCTGTTCCACGAACAAGTTTACAGAACGGTCGGGAGGACACACATTGTCCTTATTCCACTCCCCGGTGTATGGACGGTTAG

Coding sequence (CDS)

ATGTACGCATGGCCGGGAGGACGCTCGGGTTCTCTGTTCCAGGAACAAGTGTACGGAACGGTCTGGAGGAGGCTAATTGTCCCTGTTCCACGATCCAGTGTACGGACGGTCAAGGGGACGTTGATTTTCTCGGCTCCTCGGTCCAGTTTACGCATGGCTGGGAAGACGCTCGGGGTCCATTTTCCACGATCAAGTTACCGAACGGTCGGGAGGACGCTCATTGTCCTTGTTCCACAATCTGGTGTACGGACGGTCGGGGAGACGTTGATTTTCTCGGCTCCTCTGTCCAGTGTACGCATGGTCGGGAGGACGCTCGGGATCTTTGTTCCACGAACAAGTGGACGGTCGGGGGATGTTGATTTTCTCGGCACCTCGGTCCAGTTTACGCATGGCCGGGAAGACGCTTGGGGTCTATTTTCCACGATCAAGTTACGGAACGGTCGGGAGGACGCTCATTGTCCTTGTTCCACAATCTGGTGTACGGACGGTCGGTTGGACGTTGATTTTCTCGGCTCCTCTGTCCAATTGTACGCATGGTCGAGAGGACGCTCGGGTTCTTTGTTCCACGAACAAGTGTATGGAACAGTCGGGAGGACACTCATTGTCCTTGTTCCACTCTCCGGTGTAGGGACGGTCGGGGGGACGTTGATTTTCTCGGCTCCTCGGTCCAATGTACGCATGGACGGGAGGACGTTGGGGGTCTCTTTTCCACGATCAAGTGTACGGAACGGTCGGGAGAACGCTCATTGTCCCTTTTCCACGATCTGGTGTACGGACGGTCGCTGGACGTTGAATTTCTCGGCTCCTCGGTCTAGTGTACGCATAGCCGAGAGAACGCTCGGGTTACCTGTTCCACGAACAAGTTTACAGAACGGTCGGGAGGACACACATTGTCCTTATTCCACTCCCCGGTGTATGGACGGTTAG

Protein sequence

MYAWPGGRSGSLFQEQVYGTVWRRLIVPVPRSSVRTVKGTLIFSAPRSSLRMAGKTLGVHFPRSSYRTVGRTLIVLVPQSGVRTVGETLIFSAPLSSVRMVGRTLGIFVPRTSGRSGDVDFLGTSVQFTHGREDAWGLFSTIKLRNGREDAHCPCSTIWCTDGRLDVDFLGSSVQLYAWSRGRSGSLFHEQVYGTVGRTLIVLVPLSGVGTVGGTLIFSAPRSNVRMDGRTLGVSFPRSSVRNGRENAHCPFSTIWCTDGRWTLNFSAPRSSVRIAERTLGLPVPRTSLQNGREDTHCPYSTPRCMDG
Homology
[Close]
BLAST of Lag0028107 vs. ExPASy TrEMBL
Match: A0A7N8YI77 (Uncharacterized protein OS=Mastacembelus armatus OX=205130 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.1e-04
Identity = 62/197 (31.47%), Postives = 89/197 (45.18%), Query Frame = 0 

Query: 56  TLGVHFP-RSSYRTVGRTLIVLVPQSGVRTVGETLIFSAPLSSVRMVGRT----LGIFVP 115
           T  V+ P R+  +TVGRT +  V ++ V+T G T + SA  + V+  GRT     G    
Sbjct: 5   TKSVNSPGRTDVKTVGRTDVKSVGRTDVKTAGRTDVKSAGRTDVKTAGRTDVKSAGRTDV 64

Query: 116 RTSGRSGDVDFLGTSVQFTHGREDAWGLFSTIKLRNGREDAHCPCSTIWCTDGRLDVDFL 175
           +T GR+ DV   G +   T GR D   +  T     GR D      T   T GR DV   
Sbjct: 65  KTVGRT-DVKSAGRTDVKTAGRTDVKSVGRTDVKSAGRTDVKTAGRTDVKTAGRTDVK-- 124

Query: 176 GSSVQLYAWSRGRSGSLFHEQVYGTVGRTLIVLVPLSGVGTVGGTLIFSAPRSNVRMDGR 235
                    S GR+          +VGRT +     + V + G T + SA R++V+  GR
Sbjct: 125 ---------SAGRTD-------VKSVGRTDVKSAGRTDVKSAGRTDVKSAGRTDVKSAGR 182

Query: 236 TLGVSFPRSSVRNGREN 248
           T   +  R+ V++ R N
Sbjct: 185 TDVKTVGRTDVKSARRN 182

The following BLAST results are available for this feature:
BLAST of Lag0028107 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0028107 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0028107 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7N8YI772.1e-0431.47Uncharacterized protein OS=Mastacembelus armatus OX=205130 PE=4 SV=1[more]
BLAST of Lag0028107 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 285..308

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0028107.1Lag0028107.1mRNA