Lag0028078 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0028078
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	LOW QUALITY PROTEIN: uncharacterized protein LOC111022007
Location	chr8: 12456426 .. 12457494 (+)
RNA-Seq Expression	Lag0028078
Synteny	Lag0028078

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATTATGAGAAAAAGGGATTTCCTCAATGAGAAGGAATTCTCTAATAGAGCGGGAGCACTGCCAGAGTTCGTAAGCAGAGTTATCTCCCAATACAAGTGGCAAGAGTTCTGTGTTCACTCTCACGAGGCCATAGTGCCATTAGTTCGAGATTTTTACACCGACCTGAGGGTTGAAAGCATCAGTATGGCGGTGGTGAGAGGAAAATGGTTAGCTTCTCTTCGGTAGACATTAATAGGGTGTACAAAATCAAGGCACCCCTGAATGCAAGAGGCAAATGTTATTAGGAACCCCTCAGCCAAGCAGATGAAGGAAGCACTAAAACTTGTGGCCAACAAGGGTGTTCAATGGAAAGAGTCTCAGACAAAGGTGAAGACTCTAGTGCCAAGCGACTTAAAGCCAGAATCAGCAGTTTGGCTTCACTTTTTGAAAAACCGTTTGATACCAACCACCCACGATAGTACGATTTCAATAAATAGAGTCATGCTCCTCTACTGTATTATGAAGGCGTTGGAGATCAACATTGGGAGCATAACCAGGGACGAGATTTTAGCTTGTGGAAGAAAAAGAGCATGTAAACTTTCTTTGGATCACTCATCACCCAACTCTATCAAAGGGTGAAGATAGTTCCAGGCAAGGACGAGGAGCGTCATTTCTTCAAACCGACCATTGACCTGTCCTTGATCGAGACGCTTCAACAGAATAGTATCCAGAGGAATGATAAAGCCTCCACATCTCAGGCCATTCTACCATCAGGGCCAGCATAACTTCTCCATCCCAGCACACTCCTTTTCTAGGGCCCTCACCATCATCGGAATCCTTAGCCATTGCCTACCGCTAGCTTGATCAAATCAGGGAGAACCTGAGAACTTATTGGGCATATGCAAAGAAGAGAGATGAAGCCATTAGAGAGTTCTATCTCTCTATCGCCCCGAGAATTGCCCCGATTTTTCCCAATTTCCCTCGATCGTTGCAGCCTCAAGAAGACCAGGATTCTGATGAAGATGAAGATGAGAATGATGATGAAGATGATGAAGAGAAAGAGAGTTCCTCGGACGAGGACTAG

mRNA sequence

ATGGAGATTATGAGAAAAAGGGATTTCCTCAATGAGAAGGAATTCTCTAATAGAGCGGGAGCACTGCCAGAGTTCGTAAGCAGAGTTATCTCCCAATACAAGTGGCAAGAGTTCTGTGTTCACTCTCACGAGGCCATAGTGCCATTAGTTCGAGATTTTTACACCGACCTGAGGGTTGAAAGCATCAGTATGGCGGTGGTGAGAGGAAAATGGAACCCCTCAGCCAAGCAGATGAAGGAAGCACTAAAACTTGTGGCCAACAAGGGTGTTCAATGGAAAGAGTCTCAGACAAAGGTGAAGACTCTAGTGCCAAGCGACTTAAAGCCAGAATCAGCAGTTTGGCTTCACTTTTTGAAAAACCGTTTGATACCAACCACCCACGATAGTACGATTTCAATAAATAGAGTCATGCTCCTCTACTGTATTATGAAGGCGTTGGAGATCAACATTGGGAGCATAACCAGGGACGAGATTTTAGCTTGTGGAAGAAAAAGAGCATGTAAACTTTCTTTGGATCACTCATCACCCAACTCTATCAAAGGGGAGAACCTGAGAACTTATTGGGCATATGCAAAGAAGAGAGATGAAGCCATTAGAGAGTTCTATCTCTCTATCGCCCCGAGAATTGCCCCGATTTTTCCCAATTTCCCTCGATCGTTGCAGCCTCAAGAAGACCAGGATTCTGATGAAGATGAAGATGAGAATGATGATGAAGATGATGAAGAGAAAGAGAGTTCCTCGGACGAGGACTAG

Coding sequence (CDS)

ATGGAGATTATGAGAAAAAGGGATTTCCTCAATGAGAAGGAATTCTCTAATAGAGCGGGAGCACTGCCAGAGTTCGTAAGCAGAGTTATCTCCCAATACAAGTGGCAAGAGTTCTGTGTTCACTCTCACGAGGCCATAGTGCCATTAGTTCGAGATTTTTACACCGACCTGAGGGTTGAAAGCATCAGTATGGCGGTGGTGAGAGGAAAATGGAACCCCTCAGCCAAGCAGATGAAGGAAGCACTAAAACTTGTGGCCAACAAGGGTGTTCAATGGAAAGAGTCTCAGACAAAGGTGAAGACTCTAGTGCCAAGCGACTTAAAGCCAGAATCAGCAGTTTGGCTTCACTTTTTGAAAAACCGTTTGATACCAACCACCCACGATAGTACGATTTCAATAAATAGAGTCATGCTCCTCTACTGTATTATGAAGGCGTTGGAGATCAACATTGGGAGCATAACCAGGGACGAGATTTTAGCTTGTGGAAGAAAAAGAGCATGTAAACTTTCTTTGGATCACTCATCACCCAACTCTATCAAAGGGGAGAACCTGAGAACTTATTGGGCATATGCAAAGAAGAGAGATGAAGCCATTAGAGAGTTCTATCTCTCTATCGCCCCGAGAATTGCCCCGATTTTTCCCAATTTCCCTCGATCGTTGCAGCCTCAAGAAGACCAGGATTCTGATGAAGATGAAGATGAGAATGATGATGAAGATGATGAAGAGAAAGAGAGTTCCTCGGACGAGGACTAG

Protein sequence

MEIMRKRDFLNEKEFSNRAGALPEFVSRVISQYKWQEFCVHSHEAIVPLVRDFYTDLRVESISMAVVRGKWNPSAKQMKEALKLVANKGVQWKESQTKVKTLVPSDLKPESAVWLHFLKNRLIPTTHDSTISINRVMLLYCIMKALEINIGSITRDEILACGRKRACKLSLDHSSPNSIKGENLRTYWAYAKKRDEAIREFYLSIAPRIAPIFPNFPRSLQPQEDQDSDEDEDENDDEDDEEKESSSDED

Homology

[Close]

BLAST of Lag0028078 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 107.5 bits (267), Expect = 1.7e-19
Identity = 60/176 (34.09%), Postives = 91/176 (51.70%), Query Frame = 0


Query: 16  SNRAGALPEFVSRVISQYKWQEFCVHSHEAIVPLVRDFYTDLRVESISMAVVRG---KWN 75
           S   G LP F+++VI+Q+ W++FC H  + IVPLVR+FY +L     +   VRG    W+
Sbjct: 54  SETMGQLP-FIAQVITQHNWKQFCAHPEDPIVPLVREFYANLTDPEENTVYVRGVQVSWS 113

Query: 76  PSA-----------------------KQMKEALKLVANKGVQWKESQTKVKTLVPSDLKP 135
             A                       + +   L+ VA  G +W  S     T + S L P
Sbjct: 114 EEAINAVFGLGDPVDEHSEFIQNITQQDLITVLETVAAAGAEWNVSAQGAYTCIRSALTP 173

Query: 136 ESAVWLHFLKNRLIPTTHDSTISINRVMLLYCIMKALEINIGSITRDEILACGRKR 166
            + VW HFLK+RL+PTTH  T+S +R++LL+ ++    IN+G +   EI AC  ++
Sbjct: 174 AAKVWYHFLKSRLLPTTHGKTVSKDRMLLLHSMLIGKSINVGRMIHSEIRACAARK 228

[Close]

BLAST of Lag0028078 vs. NCBI nr
Match: PON70375.1 (hypothetical protein PanWU01x14_080440 [Parasponia andersonii])

HSP 1 Score: 105.5 bits (262), Expect = 6.6e-19
Identity = 63/194 (32.47%), Postives = 93/194 (47.94%), Query Frame = 0


Query: 2   EIMRKRDFLNEKEF---SNRAGALPEFVSRVISQYKWQEFCVHSHEAIVPLVRDFYTDLR 61
           E ++ R    EKEF   +++    P F++ VI Q+ WQ FC H  + IVPLVR+FYT++ 
Sbjct: 57  ENIQNRPLSVEKEFVWDNSKPLEQPPFIADVIIQHNWQLFCAHPEDPIVPLVREFYTNMT 116

Query: 62  VESISMAVVRGKWNP--------------------------SAKQMKEALKLVANKGVQW 121
                   +RG   P                          +  ++   L+ VA  G +W
Sbjct: 117 NPDDDTVYIRGVQVPLSVEAINTIFSLGDPIDEHSEFVEDITKPELVIVLETVAIVGAEW 176

Query: 122 KESQTKVKTLVPSDLKPESAVWLHFLKNRLIPTTHDSTISINRVMLLYCIMKALEINIGS 167
             S     T + S L P + VW HFLK+RL+PTTH  T+S   V LLY ++    IN+G 
Sbjct: 177 NVSSQGAYTCLRSSLNPPAKVWYHFLKSRLLPTTHGKTVSKEHVSLLYSMLTGKSINVGR 236

[Close]

BLAST of Lag0028078 vs. NCBI nr
Match: PON35554.1 (hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii])

HSP 1 Score: 104.0 bits (258), Expect = 1.9e-18
Identity = 59/176 (33.52%), Postives = 89/176 (50.57%), Query Frame = 0


Query: 16  SNRAGALPEFVSRVISQYKWQEFCVHSHEAIVPLVRDFYTDLRVESISMAVVRG---KWN 75
           S   G LP F+++VI+Q+ W++FC H  + IVPLVR+FY +L     +   VRG    W+
Sbjct: 45  SETMGQLP-FIAQVITQHNWKQFCAHPEDPIVPLVREFYANLTDPVENTVYVRGVQVSWS 104

Query: 76  PSA-----------------------KQMKEALKLVANKGVQWKESQTKVKTLVPSDLKP 135
             A                         +   L+ VA  G +W  S     T + S L P
Sbjct: 105 EEAINAVFGLGDPVDEHSEFIENITEHDLITVLETVAVAGAEWNVSAQGAYTCIRSALTP 164

Query: 136 ESAVWLHFLKNRLIPTTHDSTISINRVMLLYCIMKALEINIGSITRDEILACGRKR 166
            + VW HFLK+ L+PTTH  T+S +R++LL+ ++    IN+G +   EI AC  ++
Sbjct: 165 AAKVWFHFLKSHLLPTTHGKTVSKDRMLLLHSMLIGKSINVGRMIHSEIRACAARK 219

[Close]

BLAST of Lag0028078 vs. NCBI nr
Match: XP_022154847.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 [Momordica charantia])

HSP 1 Score: 100.5 bits (249), Expect = 2.1e-17
Identity = 55/163 (33.74%), Postives = 88/163 (53.99%), Query Frame = 0


Query: 7    RDFLNEKEFSNRAGALPEFVSRVISQYKWQEFCVHSHEAIVPLVRDFYTDLRVESISMAV 66
            RD L E+ F      +PE+V + I +  W+            LV++FYT +         
Sbjct: 1125 RDILLERGFDEAQEPVPEYVRKRIVENGWETLFAPITRVSEALVKEFYTAINPNRGDEVR 1184

Query: 67   VRGK---WNPSAKQMKEALKLVANKGVQWKESQTKVKTLVPSDLKPESAVWLHFLKNRLI 126
            VRG     +PS +Q++EA +L+      W  S     +L P D+  ++ VW++ +KNRLI
Sbjct: 1185 VRGNEILVHPSDEQVEEARRLICRPHKTWTISTMGKLSLKPLDINEQATVWMYVVKNRLI 1244

Query: 127  PTTHDSTISINRVMLLYCIMKALEINIGSITRDEILACGRKRA 167
            PT++DS+I  NR M++Y ++K +E N G + R+EI +C  K A
Sbjct: 1245 PTSYDSSIKRNRAMIVYILVKGVEFNFGELIRNEIQSCSEKLA 1287

[Close]

BLAST of Lag0028078 vs. NCBI nr
Match: EXB53755.1 (hypothetical protein L484_022412 [Morus notabilis])

HSP 1 Score: 97.1 bits (240), Expect = 2.4e-16
Identity = 56/169 (33.14%), Postives = 85/169 (50.30%), Query Frame = 0


Query: 23  PEFVSRVISQYKWQEFCVHSHEAIVPLVRDFYT---DLRVESISMAVVRGKWNPSA---- 82
           P F++RVI Q+ W++FC H    IVPLVR+FY    D   E++ +  V+  +   A    
Sbjct: 4   PAFITRVIHQHGWRQFCQHPSNPIVPLVREFYANLLDFNQETVFVQNVKVPFTARAINSI 63

Query: 83  -------------------KQMKEALKLVANKGVQWKESQTKVKTLVPSDLKPESAVWLH 142
                              +Q++  L  VA +G  W+ S     T +  +LK  + +W H
Sbjct: 64  FGLEEVVDEYVDFASEVTDEQLEVVLAEVAIEGATWQISPQGAYTCIRKELKRHAQIWYH 123

Query: 143 FLKNRLIPTTHDSTISINRVMLLYCIMKALEINIGSITRDEILACGRKR 166
           FL  R +P+TH  T++ +RV+LLY I+  + +NI  IT  EI AC   R
Sbjct: 124 FLTARFMPSTHGKTVAKDRVLLLYSILTGISVNIEEITIKEIKACSAAR 172

[Close]

BLAST of Lag0028078 vs. ExPASy TrEMBL
Match: A0A2P5BCG4 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_251180 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 8.5e-20
Identity = 60/176 (34.09%), Postives = 91/176 (51.70%), Query Frame = 0


Query: 16  SNRAGALPEFVSRVISQYKWQEFCVHSHEAIVPLVRDFYTDLRVESISMAVVRG---KWN 75
           S   G LP F+++VI+Q+ W++FC H  + IVPLVR+FY +L     +   VRG    W+
Sbjct: 54  SETMGQLP-FIAQVITQHNWKQFCAHPEDPIVPLVREFYANLTDPEENTVYVRGVQVSWS 113

Query: 76  PSA-----------------------KQMKEALKLVANKGVQWKESQTKVKTLVPSDLKP 135
             A                       + +   L+ VA  G +W  S     T + S L P
Sbjct: 114 EEAINAVFGLGDPVDEHSEFIQNITQQDLITVLETVAAAGAEWNVSAQGAYTCIRSALTP 173

Query: 136 ESAVWLHFLKNRLIPTTHDSTISINRVMLLYCIMKALEINIGSITRDEILACGRKR 166
            + VW HFLK+RL+PTTH  T+S +R++LL+ ++    IN+G +   EI AC  ++
Sbjct: 174 AAKVWYHFLKSRLLPTTHGKTVSKDRMLLLHSMLIGKSINVGRMIHSEIRACAARK 228

[Close]

BLAST of Lag0028078 vs. ExPASy TrEMBL
Match: A0A2P5DAQ2 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_080440 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.2e-19
Identity = 63/194 (32.47%), Postives = 93/194 (47.94%), Query Frame = 0


Query: 2   EIMRKRDFLNEKEF---SNRAGALPEFVSRVISQYKWQEFCVHSHEAIVPLVRDFYTDLR 61
           E ++ R    EKEF   +++    P F++ VI Q+ WQ FC H  + IVPLVR+FYT++ 
Sbjct: 57  ENIQNRPLSVEKEFVWDNSKPLEQPPFIADVIIQHNWQLFCAHPEDPIVPLVREFYTNMT 116

Query: 62  VESISMAVVRGKWNP--------------------------SAKQMKEALKLVANKGVQW 121
                   +RG   P                          +  ++   L+ VA  G +W
Sbjct: 117 NPDDDTVYIRGVQVPLSVEAINTIFSLGDPIDEHSEFVEDITKPELVIVLETVAIVGAEW 176

Query: 122 KESQTKVKTLVPSDLKPESAVWLHFLKNRLIPTTHDSTISINRVMLLYCIMKALEINIGS 167
             S     T + S L P + VW HFLK+RL+PTTH  T+S   V LLY ++    IN+G 
Sbjct: 177 NVSSQGAYTCLRSSLNPPAKVWYHFLKSRLLPTTHGKTVSKEHVSLLYSMLTGKSINVGR 236

[Close]

BLAST of Lag0028078 vs. ExPASy TrEMBL
Match: A0A2P5AGA5 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_335450 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 9.3e-19
Identity = 59/176 (33.52%), Postives = 89/176 (50.57%), Query Frame = 0


Query: 16  SNRAGALPEFVSRVISQYKWQEFCVHSHEAIVPLVRDFYTDLRVESISMAVVRG---KWN 75
           S   G LP F+++VI+Q+ W++FC H  + IVPLVR+FY +L     +   VRG    W+
Sbjct: 45  SETMGQLP-FIAQVITQHNWKQFCAHPEDPIVPLVREFYANLTDPVENTVYVRGVQVSWS 104

Query: 76  PSA-----------------------KQMKEALKLVANKGVQWKESQTKVKTLVPSDLKP 135
             A                         +   L+ VA  G +W  S     T + S L P
Sbjct: 105 EEAINAVFGLGDPVDEHSEFIENITEHDLITVLETVAVAGAEWNVSAQGAYTCIRSALTP 164

Query: 136 ESAVWLHFLKNRLIPTTHDSTISINRVMLLYCIMKALEINIGSITRDEILACGRKR 166
            + VW HFLK+ L+PTTH  T+S +R++LL+ ++    IN+G +   EI AC  ++
Sbjct: 165 AAKVWFHFLKSHLLPTTHGKTVSKDRMLLLHSMLIGKSINVGRMIHSEIRACAARK 219

[Close]

BLAST of Lag0028078 vs. ExPASy TrEMBL
Match: A0A6J1DMT3 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 OS=Momordica charantia OX=3673 GN=LOC111022007 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.0e-17
Identity = 55/163 (33.74%), Postives = 88/163 (53.99%), Query Frame = 0


Query: 7    RDFLNEKEFSNRAGALPEFVSRVISQYKWQEFCVHSHEAIVPLVRDFYTDLRVESISMAV 66
            RD L E+ F      +PE+V + I +  W+            LV++FYT +         
Sbjct: 1125 RDILLERGFDEAQEPVPEYVRKRIVENGWETLFAPITRVSEALVKEFYTAINPNRGDEVR 1184

Query: 67   VRGK---WNPSAKQMKEALKLVANKGVQWKESQTKVKTLVPSDLKPESAVWLHFLKNRLI 126
            VRG     +PS +Q++EA +L+      W  S     +L P D+  ++ VW++ +KNRLI
Sbjct: 1185 VRGNEILVHPSDEQVEEARRLICRPHKTWTISTMGKLSLKPLDINEQATVWMYVVKNRLI 1244

Query: 127  PTTHDSTISINRVMLLYCIMKALEINIGSITRDEILACGRKRA 167
            PT++DS+I  NR M++Y ++K +E N G + R+EI +C  K A
Sbjct: 1245 PTSYDSSIKRNRAMIVYILVKGVEFNFGELIRNEIQSCSEKLA 1287

[Close]

BLAST of Lag0028078 vs. ExPASy TrEMBL
Match: W9QTD9 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022412 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-16
Identity = 56/169 (33.14%), Postives = 85/169 (50.30%), Query Frame = 0


Query: 23  PEFVSRVISQYKWQEFCVHSHEAIVPLVRDFYT---DLRVESISMAVVRGKWNPSA---- 82
           P F++RVI Q+ W++FC H    IVPLVR+FY    D   E++ +  V+  +   A    
Sbjct: 4   PAFITRVIHQHGWRQFCQHPSNPIVPLVREFYANLLDFNQETVFVQNVKVPFTARAINSI 63

Query: 83  -------------------KQMKEALKLVANKGVQWKESQTKVKTLVPSDLKPESAVWLH 142
                              +Q++  L  VA +G  W+ S     T +  +LK  + +W H
Sbjct: 64  FGLEEVVDEYVDFASEVTDEQLEVVLAEVAIEGATWQISPQGAYTCIRKELKRHAQIWYH 123

Query: 143 FLKNRLIPTTHDSTISINRVMLLYCIMKALEINIGSITRDEILACGRKR 166
           FL  R +P+TH  T++ +RV+LLY I+  + +NI  IT  EI AC   R
Sbjct: 124 FLTARFMPSTHGKTVAKDRVLLLYSILTGISVNIEEITIKEIKACSAAR 172

The following BLAST results are available for this feature:

BLAST of Lag0028078 vs. NCBI nr


Match Name	E-value	Identity	Description
PON46472.1	1.7e-19	34.09	hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]	[more]
PON70375.1	6.6e-19	32.47	hypothetical protein PanWU01x14_080440 [Parasponia andersonii]	[more]
PON35554.1	1.9e-18	33.52	hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii]	[more]
XP_022154847.1	2.1e-17	33.74	LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 [Momordica charantia]	[more]
EXB53755.1	2.4e-16	33.14	hypothetical protein L484_022412 [Morus notabilis]	[more]

BLAST of Lag0028078 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0028078 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5BCG4	8.5e-20	34.09	Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]
A0A2P5DAQ2	3.2e-19	32.47	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_080440 PE...	[more]
A0A2P5AGA5	9.3e-19	33.52	Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]
A0A6J1DMT3	1.0e-17	33.74	LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 OS=Momordica charantia...	[more]
W9QTD9	1.1e-16	33.14	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022412 PE=4 SV=1	[more]

BLAST of Lag0028078 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 225..250
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 214..250

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0028078.1	Lag0028078.1	mRNA