Lag0027998 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0027998
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr8: 9729187 .. 9729666 (-)
RNA-Seq ExpressionLag0027998
SyntenyLag0027998
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGATGCAGCCAACGGAGGAGCATTAGTTAACAAGACAACTGTTGAAGCTAGAAAACTGATTTCAAGTATGGCTAAGAACTCTCAGCAATTCAGGACGAGAGGACCAGCTGCAGTTGTGCAAGCCGCCACAAAAAGTGAGGTAAGCGAAATGCACTCTGAAATGAGTAAATTAACTAAACTTGCTTGCTCTTTGTGTTCAAGACAGTTGTAGGCGAAAGCCTTTGGACTTTGCTTCATGACTACCCACACTATCGATGCTTGCCCAAAGATACAAGACAATGGAGAGGTGAATACCATTGGTGGATACAATGGGAATAAAAGGTAGTACAACACTTACAATCCAGAATGAATAGACCATCCAAATTTTAGTTATGGGAACCAACAGAAGCCACTGATGTTCAAGCAGAATCAAGCTTCCACCTCAACTTCAGGGACATTTTTCGATGAGGCACTTAAGAAGGACTTGAATGCTTAG

mRNA sequence

ATGGTGGATGCAGCCAACGGAGGAGCATTAGTTAACAAGACAACTGTTGAAGCTAGAAAACTGATTTCAAGTATGGCTAAGAACTCTCAGCAATTCAGGACGAGAGGACCAGCTGCAGTTGTGCAAGCCGCCACAAAAAGTGAGGCGAAAGCCTTTGGACTTTGCTTCATGACTACCCACACTATCGATGCTTGCCCAAAGATACAAGACAATGGAGAGGTGAATACCATTGGTGGATACAATGGGAATAAAAGTTATGGGAACCAACAGAAGCCACTGATGTTCAAGCAGAATCAAGCTTCCACCTCAACTTCAGGGACATTTTTCGATGAGGCACTTAAGAAGGACTTGAATGCTTAG

Coding sequence (CDS)

ATGGTGGATGCAGCCAACGGAGGAGCATTAGTTAACAAGACAACTGTTGAAGCTAGAAAACTGATTTCAAGTATGGCTAAGAACTCTCAGCAATTCAGGACGAGAGGACCAGCTGCAGTTGTGCAAGCCGCCACAAAAAGTGAGGCGAAAGCCTTTGGACTTTGCTTCATGACTACCCACACTATCGATGCTTGCCCAAAGATACAAGACAATGGAGAGGTGAATACCATTGGTGGATACAATGGGAATAAAAGTTATGGGAACCAACAGAAGCCACTGATGTTCAAGCAGAATCAAGCTTCCACCTCAACTTCAGGGACATTTTTCGATGAGGCACTTAAGAAGGACTTGAATGCTTAG

Protein sequence

MVDAANGGALVNKTTVEARKLISSMAKNSQQFRTRGPAAVVQAATKSEAKAFGLCFMTTHTIDACPKIQDNGEVNTIGGYNGNKSYGNQQKPLMFKQNQASTSTSGTFFDEALKKDLNA
Homology
BLAST of Lag0027998 vs. NCBI nr
Match: XP_024986583.1 (uncharacterized protein LOC112521826 [Cynara cardunculus var. scolymus])

HSP 1 Score: 78.2 bits (191), Expect = 5.4e-11
Identity = 55/166 (33.13%), Postives = 75/166 (45.18%), Query Frame = 0

Query: 1   MVDAANGGALVNKTTVEARKLISSMAKNSQQFRTRGPAAVVQ------------------ 60
           M+DAA+GGA+ NKT  E R LI++ AKNSQQF  R   A                     
Sbjct: 178 MIDAASGGAMFNKTPTEVRALITTTAKNSQQFSVRREPAKANEINVASIESHLFDLTNLV 237

Query: 61  ---AATKSEAKAFGLCFMTTHTIDACPKIQDN-----GEVNTIGGYNG---------NKS 115
                 K + KA+G+C  T H IDACP++Q++       VN IGGY G         N  
Sbjct: 238 KQLVVDKEQVKAYGICLATGHPIDACPQLQEHVLVTAENVNAIGGYQGQPQPQQRFFNNY 297

BLAST of Lag0027998 vs. NCBI nr
Match: XP_024963453.1 (uncharacterized protein LOC112503699, partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-10
Identity = 50/145 (34.48%), Postives = 73/145 (50.34%), Query Frame = 0

Query: 1   MVDAANGGALVNKTTVEARKLISSMAKNSQQFRTRGPAAVVQAATKSEAKAFGLCFMTTH 60
           M+DAA+GGA+ NKT  E R LI++MA+NSQ F             K + KA G+C  T+H
Sbjct: 179 MIDAASGGAMFNKTPTEVRALITTMAENSQHF------------GKEQVKACGICLATSH 238

Query: 61  TIDACPKIQDN-----GEVNTIGGYNG--------NKSYGNQQKPLM------------- 115
             D CP++Q++      +VN IGG+ G        N ++GNQ+ P               
Sbjct: 239 PTDXCPQLQEDVLVTAEDVNAIGGFQGQPQQQRYFNNNFGNQRPPQFQNFVQRPQQQQQF 298

BLAST of Lag0027998 vs. NCBI nr
Match: XP_024964029.1 (uncharacterized protein LOC112504332 [Cynara cardunculus var. scolymus])

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-10
Identity = 50/145 (34.48%), Postives = 73/145 (50.34%), Query Frame = 0

Query: 1   MVDAANGGALVNKTTVEARKLISSMAKNSQQFRTRGPAAVVQAATKSEAKAFGLCFMTTH 60
           M+DAA+GGA+ NKT  E R LI++MA+NSQQF             K + KA G+C  T H
Sbjct: 178 MIDAASGGAMFNKTPTEIRALITTMAENSQQFSL--------VVDKEQVKACGICLATGH 237

Query: 61  TIDACPKIQDN-----GEVNTIGGYNG---------NKSYGNQQKPLM------------ 115
             DACP++Q++       +N IGGY G         N ++GNQ+ P              
Sbjct: 238 PTDACPQLQEDVLVTAENMNAIGGYQGQPQPQQRFFNXNFGNQRPPQFQNFVQRPPQQQF 297

BLAST of Lag0027998 vs. NCBI nr
Match: RDY13916.1 (hypothetical protein CR513_01096, partial [Mucuna pruriens])

HSP 1 Score: 75.1 bits (183), Expect = 4.6e-10
Identity = 41/91 (45.05%), Postives = 57/91 (62.64%), Query Frame = 0

Query: 1  MVDAANGGALVNKTTVEARKLISSMAKNSQQFRTRGPAAVVQAATKSEAKAFGLCFMTTH 60
          M+DAA+GGAL++KT   AR LIS+MA N+QQF  RGP    Q  T   AK +G+C    H
Sbjct: 5  MIDAASGGALMDKTPAAARHLISNMASNTQQFGIRGPNQSRQHHTAMAAKVYGICTSVEH 64

Query: 61 TIDACPKIQ--DNGEVNTIGGYNGNKSYGNQ 90
            D+CP +Q  ++G+  ++G   G + YG Q
Sbjct: 65 PTDSCPTLQEIESGQTESVGAVGGFQ-YGKQ 94

BLAST of Lag0027998 vs. NCBI nr
Match: XP_024990730.1 (uncharacterized protein LOC112525018 [Cynara cardunculus var. scolymus])

HSP 1 Score: 75.1 bits (183), Expect = 4.6e-10
Identity = 54/167 (32.34%), Postives = 83/167 (49.70%), Query Frame = 0

Query: 1   MVDAANGGALVNKTTVEARKLISSMAKNSQQFRTRG-----PAAVVQAAT---------- 60
           M+DAA+GGA+ NKT  + R LI++MA+NSQ F  RG     P  + +  T          
Sbjct: 181 MIDAASGGAIFNKTPTQVRALITTMAENSQHFSVRGDLRREPYKINEVNTGTIESRLFDL 240

Query: 61  ----------KSEAKAFGLCFMTTHTIDACPKIQDN-----GEVNTIGGYNG-------- 115
                     K + KA G+C  T+H  DACP++Q++      +VN IGG+ G        
Sbjct: 241 TNLVKQLVVGKEQVKACGICNGTSHPTDACPQLQEDVLVAPEDVNAIGGFPGQQPQQRFY 300

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_024986583.15.4e-1133.13uncharacterized protein LOC112521826 [Cynara cardunculus var. scolymus][more]
XP_024963453.11.2e-1034.48uncharacterized protein LOC112503699, partial [Cynara cardunculus var. scolymus][more]
XP_024964029.12.1e-1034.48uncharacterized protein LOC112504332 [Cynara cardunculus var. scolymus][more]
RDY13916.14.6e-1045.05hypothetical protein CR513_01096, partial [Mucuna pruriens][more]
XP_024990730.14.6e-1032.34uncharacterized protein LOC112525018 [Cynara cardunculus var. scolymus][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0027998.1Lag0027998.1mRNA