Lag0027987 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0027987
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr8: 9383517 .. 9384252 (+)
RNA-Seq ExpressionLag0027987
SyntenyLag0027987
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGAGTATTTGGCCATTATGAAACATGCATTCGATAATCTGCAACTTGCACGTAATCCTATCTCCATGGGTGGGCTTGATTCAAACTATATTCTGATAGTGTGCTCAATCGAGGATAAAGATATCACAACTTGGCAAGAACTATCTTTCATCCTGATTCAGTTTGAAGGGACTCTTGCTCGCTACAGTGTCATCACCAACACTAAAGACCTACCTGATCTTGTTGCACATCTTGTGTATAGTCATCAAAATCAAGCGTCTGGGAAAAAATTCTTCAACCCTAATCGAGGTAATTCAAATCAAGGCATCAACCGACAAAACTTCTCCAATAGTCGAGGCTCCAACAGGGGAAGAAGTTGAGGCCGAGGAGGTTTTTAGAGGACCAACTTTCCAACTCTATGGAAAATACGGTCATGCTCCTTATTGTTACTCTTGGTTTGAGGAACAATTTAATAACCCTTATGCTGCTAGCTACAGTAACAACCAAGGATGAAACACGACTACTTCCTCAGCTTATATTGCAACGCCAGAGGTTTTGAATGATCCTAAATGGCTAGCCAACAGTGGAGCTACGAATCATGTAACCGCGAATGCTGGAAACTTAGCCCTGAAAAATGAGTATAATGGAACCAAATTAAATATTGATCATGTTGGTAGTAGTTTTGTTACCTGTGATTCTAGAAATTATAAGCTGATTAAGTTGAATAACATGCTGACGGATTGGAATTCCTAA

mRNA sequence

ATGGGGGAGTATTTGGCCATTATGAAACATGCATTCGATAATCTGCAACTTGCACGTAATCCTATCTCCATGGGTGGGCTTGATTCAAACTATATTCTGATAGTGTGCTCAATCGAGGATAAAGATATCACAACTTGGCAAGAACTATCTTTCATCCTGATTCAGTTTGAAGGGACTCTTGCTCGCTACAGTGTCATCACCAACACTAAAGACCTACCTGATCTTGTTGCACATCTTGTGTATAGTCATCAAAATCAAGCGTCTGGGAAAAAATTCTTCAACCCTAATCGAGCTTATATTGCAACGCCAGAGGTTTTGAATGATCCTAAATGGCTAGCCAACAGTGGAGCTACGAATCATGTAACCGCGAATGCTGGAAACTTAGCCCTGAAAAATGAGTATAATGGAACCAAATTAAATATTGATCATGTTGGTAGTAGTTTTGTTACCTGTGATTCTAGAAATTATAAGCTGATTAAGTTGAATAACATGCTGACGGATTGGAATTCCTAA

Coding sequence (CDS)

ATGGGGGAGTATTTGGCCATTATGAAACATGCATTCGATAATCTGCAACTTGCACGTAATCCTATCTCCATGGGTGGGCTTGATTCAAACTATATTCTGATAGTGTGCTCAATCGAGGATAAAGATATCACAACTTGGCAAGAACTATCTTTCATCCTGATTCAGTTTGAAGGGACTCTTGCTCGCTACAGTGTCATCACCAACACTAAAGACCTACCTGATCTTGTTGCACATCTTGTGTATAGTCATCAAAATCAAGCGTCTGGGAAAAAATTCTTCAACCCTAATCGAGCTTATATTGCAACGCCAGAGGTTTTGAATGATCCTAAATGGCTAGCCAACAGTGGAGCTACGAATCATGTAACCGCGAATGCTGGAAACTTAGCCCTGAAAAATGAGTATAATGGAACCAAATTAAATATTGATCATGTTGGTAGTAGTTTTGTTACCTGTGATTCTAGAAATTATAAGCTGATTAAGTTGAATAACATGCTGACGGATTGGAATTCCTAA

Protein sequence

MGEYLAIMKHAFDNLQLARNPISMGGLDSNYILIVCSIEDKDITTWQELSFILIQFEGTLARYSVITNTKDLPDLVAHLVYSHQNQASGKKFFNPNRAYIATPEVLNDPKWLANSGATNHVTANAGNLALKNEYNGTKLNIDHVGSSFVTCDSRNYKLIKLNNMLTDWNS
Homology
BLAST of Lag0027987 vs. NCBI nr
Match: XP_022157748.1 (uncharacterized protein LOC111024384 isoform X1 [Momordica charantia])

HSP 1 Score: 95.5 bits (236), Expect = 4.7e-16
Identity = 62/217 (28.57%), Postives = 95/217 (43.78%), Query Frame = 0

Query: 1   MGEYLAIMKHAFDNLQLARNPIS--------MGGLDSNYILIVCSIEDKDITTWQELSFI 60
           M EYL +MK A ++L+LA  P++        + GL++ Y+ IVC IE KD T+WQEL   
Sbjct: 168 MSEYLGLMKQASESLKLAGEPVAFNYLMSCVLSGLEAEYLPIVCQIEGKDSTSWQELFAT 227

Query: 61  LIQFEGTLARYSVIT--NTKDLPDLVAHLVYSHQNQASGKKFF----------------- 120
           L+ FE TL R ++++    + + D   + V+S QN    ++F                  
Sbjct: 228 LVTFENTLMRLNIVSTATAEGISDGSXNYVHSKQNSVGNRQFHQSQSGQGQGRGSYNSND 287

Query: 121 ------------------------------------------------------NPNRAY 137
                                                                 N N AY
Sbjct: 288 AKNNVRGRGRGRFSPYRGNNSKPSCQLCGKYGHIAAVCYKRFDENFNNLSSSNNNRNSAY 347

BLAST of Lag0027987 vs. NCBI nr
Match: XP_022157750.1 (uncharacterized protein LOC111024384 isoform X2 [Momordica charantia])

HSP 1 Score: 95.5 bits (236), Expect = 4.7e-16
Identity = 62/217 (28.57%), Postives = 95/217 (43.78%), Query Frame = 0

Query: 1   MGEYLAIMKHAFDNLQLARNPIS--------MGGLDSNYILIVCSIEDKDITTWQELSFI 60
           M EYL +MK A ++L+LA  P++        + GL++ Y+ IVC IE KD T+WQEL   
Sbjct: 168 MSEYLGLMKQASESLKLAGEPVAFNYLMSCVLSGLEAEYLPIVCQIEGKDSTSWQELFAT 227

Query: 61  LIQFEGTLARYSVIT--NTKDLPDLVAHLVYSHQNQASGKKFF----------------- 120
           L+ FE TL R ++++    + + D   + V+S QN    ++F                  
Sbjct: 228 LVTFENTLMRLNIVSTATAEGISDGSXNYVHSKQNSVGNRQFHQSQSGQGQGRGSYNSND 287

Query: 121 ------------------------------------------------------NPNRAY 137
                                                                 N N AY
Sbjct: 288 AKNNVRGRGRGRFSPYRGNNSKPSCQLCGKYGHIAAVCYKRFDENFNNLSSSNNNRNSAY 347

BLAST of Lag0027987 vs. NCBI nr
Match: XP_022142770.1 (uncharacterized protein LOC111012809 [Momordica charantia])

HSP 1 Score: 73.6 bits (179), Expect = 1.9e-09
Identity = 64/228 (28.07%), Postives = 88/228 (38.60%), Query Frame = 0

Query: 1   MGEYLAIMKHAFDNLQLARNPIS--------MGGLDSNYILIVCSIEDKDITTWQELSFI 60
           M +YL+ MK   D L LA  PIS        + GL++ Y+ I+C I  K+  +WQE+   
Sbjct: 51  MSDYLSTMKQLADCLTLAGEPISTSSLLSSVLTGLNAEYLQIICQINAKENISWQEVHAT 110

Query: 61  LIQFEGTLARYSVITNTKDLPDLVAHLVYSH------------QNQASGKKFFNPNR--- 120
           LI FE  L   + + +  D+    A+  Y+             Q +  G+     NR   
Sbjct: 111 LITFENILIHLNNV-SIADVSGPSANYTYNKSVSQNWNPHQQGQGRGQGRNSRGRNRGGR 170

Query: 121 -----------------------------------------------AYIATPEVLNDPK 150
                                                          AYI  PEV+ DP 
Sbjct: 171 FQGQRSNSSRPTCQVCGKIGHLAVVCYHRLNMQYMGNTPQGGNQAPNAYITGPEVIIDPN 230

BLAST of Lag0027987 vs. NCBI nr
Match: TXG69253.1 (hypothetical protein EZV62_004188 [Acer yangbiense])

HSP 1 Score: 71.2 bits (173), Expect = 9.4e-09
Identity = 65/235 (27.66%), Postives = 95/235 (40.43%), Query Frame = 0

Query: 1   MGEYLAIMKHAFDNLQLARNPI--------SMGGLDSNYILIVCSIEDKDITTWQELSFI 60
           M EYL  MK   D+L +A +P         S+ GLDS Y+ IV  IE ++  TWQE+   
Sbjct: 180 MEEYLTQMKTWADSLAIAGDPYPENLLFANSLAGLDSEYMPIVVLIEAREHFTWQEIYDT 239

Query: 61  LIQFEGTLARYSVITNTKD-LPDLVAHLVYS------HQNQASGKKFFN------PNR-- 120
           L+ ++  L   + ++   + L    AHL  +      + N+ S ++  N      PNR  
Sbjct: 240 LLSYDSKLEHINNVSAKGNLLSSPSAHLATNKPNNTPNTNKTSNQQNLNQGGNRAPNRGG 299

Query: 121 ----------------------------------------------------------AY 146
                                                                      +
Sbjct: 300 FRGGGGRFRGRGGRNNNSRPTCQVCGKFGHSASVCYFRYDDNYMGSVPTANSNANSPSVF 359

BLAST of Lag0027987 vs. NCBI nr
Match: TXG67243.1 (hypothetical protein EZV62_008518 [Acer yangbiense])

HSP 1 Score: 69.3 bits (168), Expect = 3.6e-08
Identity = 64/235 (27.23%), Postives = 95/235 (40.43%), Query Frame = 0

Query: 1   MGEYLAIMKHAFDNLQLARNPI--------SMGGLDSNYILIVCSIEDKDITTWQELSFI 60
           M EYL  MK   D+L +A +P         S+ GLDS Y+ IV  IE ++  TWQE+   
Sbjct: 180 MEEYLTQMKTWADSLAIAGDPYPENLLFANSLAGLDSEYMPIVVLIEAREHFTWQEIYDT 239

Query: 61  LIQFEGTLARYSVITNTKD-LPDLVAHLVYS------HQNQASGKKFFN------PNR-- 120
           L+ ++  L   + ++   + L    AHL  +      + N+ S ++  N      PNR  
Sbjct: 240 LLSYDSKLEHINNVSAKGNLLSSPSAHLATNKPNNTPNTNKTSNQQNLNQGGNRAPNRGG 299

Query: 121 ----------------------------------------------------------AY 146
                                                                      +
Sbjct: 300 FRGGGGRFRGRGGRNNNSRPTCQVCGKFGHSASVCYFRYDDNYMGSVPTANSNANSPSVF 359

BLAST of Lag0027987 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 5.6e-04
Identity = 33/105 (31.43%), Postives = 48/105 (45.71%), Query Frame = 0

Query: 68  NTKDLPDLVAHLVYSHQNQASGKKFFNP--NRAYIATPEVLNDPKWLANSGATNHVTANA 127
           + K  P L  H   S  NQ      F P   RA +A     N   WL +SGAT+H+T++ 
Sbjct: 267 SAKRCPQL--HQFQSTTNQQQSTSPFTPWQPRANLAVNSPYNANNWLLDSGATHHITSDF 326

Query: 128 GNLALKNEY---------NGTKLNIDHVGSSFVTCDSRNYKLIKL 162
            NL+    Y         +G+ + I H GS+ +   SR+  L K+
Sbjct: 327 NNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPTSSRSLDLNKV 369

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022157748.14.7e-1628.57uncharacterized protein LOC111024384 isoform X1 [Momordica charantia][more]
XP_022157750.14.7e-1628.57uncharacterized protein LOC111024384 isoform X2 [Momordica charantia][more]
XP_022142770.11.9e-0928.07uncharacterized protein LOC111012809 [Momordica charantia][more]
TXG69253.19.4e-0927.66hypothetical protein EZV62_004188 [Acer yangbiense][more]
TXG67243.13.6e-0827.23hypothetical protein EZV62_008518 [Acer yangbiense][more]
Match NameE-valueIdentityDescription
Q9ZT945.6e-0431.43Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0027987.1Lag0027987.1mRNA