Lag0027981 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0027981
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionPhosphatidylserine decarboxylase proenzyme 2-like
Locationchr8: 9220758 .. 9222728 (-)
RNA-Seq ExpressionLag0027981
SyntenyLag0027981
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAGCAGTAAAGGCCAAAGGGGCACTAGAAAATCAAGTGATTGGCATTATCATTGTGAAAATGTCAGAGGGTGCACCAATTGGGCTGGTAAAACACTTGTTAGGTGGCTTGTTTGGTTCTTGTCATTTGTATTACTATTAAGCACTCCCTCCCCTAAAGATTTTTAAGAAGAGATAAATACAGTATTTAAACTTTGAGACGAGATTTTGCACAAAAACTTCCTTGAATTATCTTTAGTCTGAAATCTTCTCTCTTTGTTGGTAGAAAGGGTGTAGTTCGAGCCAATTTTTAAATTTCATCCCAGAATCATTTAGATTTCTTCTGAAATTAAGCACTCAGTTACTGGCAGATTAACTCCAACAATGCTGCACTTTAAAAAGCTTGCAGTTAGGTGACTGCAAGGAGTCTACGGATTAGTCCGGAACCTGAATTTCTTTCCATATGATCAAGACATTTGCCAAATTGGTATTTTGCAACAGAAAAGGGTTGAAAGTTGATAAAAACCAATAATAATCACCATGGTGCGGTAATCCTCGGAATCCGTCCGTTATTTGGATATCCAAGAATGAAGACATTACATGGAATCATAAAAGTATAGAGATGTTCTCCAAGTTTGTTTTATATTTTATTATTCATTCTCTTTTCTTAGTTCATTCTATTGGCTAAATTGCTGATATACGGTGATGAAGGTCTTATCTTAAAAAAGTTTCAAATTCATTCAGAAAAAAGATTGTGCATTCATATTATCACTATCCCCTAATATGGAGTGTGAAGAAGAAACTGAGTGGTTCAAAATTTCTTAACATTTTTTTTGTTTAAATTACTGTATTGTCCTTCATTCTTTCCCTGATGTATTGGGTGTGCGAATGGCAGGAGAATGAAGGAAAAGAAAGACATGGTGGAGCCAGAAGCTGATCCGGAGAGGGATCAAAGAACTGTATTTGCTCATCAGTTTGATGAATTCCTTTGTTATTTCCTTACCTTTCATGTTTATGTTTATATTTTGCTTACCATTTATGTTTTCCTCTATATTCTTTGTGCAGATGCCTTTGTCCAGCTTATCCATCTTTTGCCAAAGCCATCTTGATCTTGTTTAACTAATAGCAATTGACATTTAGATTTTCTTCTTTCCCTTTTGTGTTACTTTGAGGATACAATTTTTGTCCTAATGTGGTCTTGCAGGATTCAGACTCTAACACTGAGGAACTTGAATTGTTGGATCCATCACCAGCTAATGCAGTGGTCGGCAAAATTTTTGTGTCATGTTTTGTCGAGGTGTGCAATATTTCATTAGTATTTCTAATTATGTTTGTGTGTGGGCTTTTTTTTATTTGATGAGAAAGCTGGATAAGACAACTAAAATCTACCTAAGAATCATAGTGTTTGGTATACCTTATAACTATATTTTCTTTCTATTATGAAATTTTCTTGGTTCAAAGTAACTAGACAATGAACATGTTTGGTCGTGTATCATCTACTCTCATTGTTTATTTTCCTTGGAAAGAATGTAGCTGGTTTGGGTTTGTTGGGGTCTATTATCAAAATAATAAAAATTAAGAGAAAATTGGTCTTCAGTGGCATCTTGACTTCCCCATAGTACTTGTTATCTAATGATTTTCAAGAATGATTTTTTTCTTGGGGATTAACTTGTGTATGCAAATATGCTGATTGAAAATATTAAAAAAGGTGATTAATAGTCACCATACGATCCCCCTCCCTCCTCTAGTCTAAGCTGGTCATCTGCTTTTTGGTTTTGTGTTGCCTCTTCATTTGATGTACCTATGGCTATTGCTATCTCTGGTCAACTACTTCTTGGTGAAGGAACCACGATTGGTGAAGGAAGACACGTAAAGGTCGTTCTCGACTGCCCTAATCCTTTATTCTGCAATTTTAGATGTTCTTCACAAATATGTGATGTTCACATGTATTTCTTTGCTATTATTTTGAGACAAAATTCCTTACGATGA

mRNA sequence

ATGGGTAGCAGTAAAGGCCAAAGGGGCACTAGAAAATCAAGTGATTGGCATTATCATTGTGAAAATGTCAGAGGGTGCACCAATTGGGCTGGTAAAACACTTGTTAGGAGAATGAAGGAAAAGAAAGACATGGTGGAGCCAGAAGCTGATCCGGAGAGGGATCAAAGAACTGATTCAGACTCTAACACTGAGGAACTTGAATTGTTGGATCCATCACCAGCTAATGCAGTGGTCGGCAAAATTTTTGTGTCATGTTTTGTCGAGTCACCATACGATCCCCCTCCCTCCTCTAGTCTAAGCTGGTCATCTGCTTTTTGGTTTTGTGTTGCCTCTTCATTTGATGTACCTATGGCTATTGCTATCTCTGGTCAACTACTTCTTGGTGAAGGAACCACGATTGGTGAAGGAAGACACGTAAAGGTCGTTCTCGACTGCCCTAATCCTTTATTCTGCAATTTTAGATGTTCTTCACAAATATGTGATGTTCACATGTATTTCTTTGCTATTATTTTGAGACAAAATTCCTTACGATGA

Coding sequence (CDS)

ATGGGTAGCAGTAAAGGCCAAAGGGGCACTAGAAAATCAAGTGATTGGCATTATCATTGTGAAAATGTCAGAGGGTGCACCAATTGGGCTGGTAAAACACTTGTTAGGAGAATGAAGGAAAAGAAAGACATGGTGGAGCCAGAAGCTGATCCGGAGAGGGATCAAAGAACTGATTCAGACTCTAACACTGAGGAACTTGAATTGTTGGATCCATCACCAGCTAATGCAGTGGTCGGCAAAATTTTTGTGTCATGTTTTGTCGAGTCACCATACGATCCCCCTCCCTCCTCTAGTCTAAGCTGGTCATCTGCTTTTTGGTTTTGTGTTGCCTCTTCATTTGATGTACCTATGGCTATTGCTATCTCTGGTCAACTACTTCTTGGTGAAGGAACCACGATTGGTGAAGGAAGACACGTAAAGGTCGTTCTCGACTGCCCTAATCCTTTATTCTGCAATTTTAGATGTTCTTCACAAATATGTGATGTTCACATGTATTTCTTTGCTATTATTTTGAGACAAAATTCCTTACGATGA

Protein sequence

MGSSKGQRGTRKSSDWHYHCENVRGCTNWAGKTLVRRMKEKKDMVEPEADPERDQRTDSDSNTEELELLDPSPANAVVGKIFVSCFVESPYDPPPSSSLSWSSAFWFCVASSFDVPMAIAISGQLLLGEGTTIGEGRHVKVVLDCPNPLFCNFRCSSQICDVHMYFFAIILRQNSLR
Homology
[Close]
BLAST of Lag0027981 vs. NCBI nr
Match: XP_038888956.1 (phosphatidylserine decarboxylase proenzyme 2-like [Benincasa hispida])

HSP 1 Score: 56.2 bits (134), Expect = 3.3e-04
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 58  DSDSNTEELELLDPSPANAVVGKIFVSCFVESPYD 93
           DSDS+TEELELLDPSP NAVVGKI +SC VE P +
Sbjct: 153 DSDSDTEELELLDPSPPNAVVGKISLSCSVEDPIE 187

[Close]
BLAST of Lag0027981 vs. NCBI nr
Match: KAA0031515.1 (phosphatidylserine decarboxylase proenzyme 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 4.3e-04
Identity = 28/41 (68.29%), Postives = 32/41 (78.05%), Query Frame = 0 

Query: 52 ERDQRTDSDSNTEELELLDPSPANAVVGKIFVSCFVESPYD 93
          +R  + DSDS+ EELELLDPSP NAVVGKI VSC VE P +
Sbjct: 52 DRGAKKDSDSDIEELELLDPSPPNAVVGKISVSCSVEDPIE 92

[Close]
BLAST of Lag0027981 vs. NCBI nr
Match: TYK06968.1 (phosphatidylserine decarboxylase proenzyme 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 4.3e-04
Identity = 28/41 (68.29%), Postives = 32/41 (78.05%), Query Frame = 0 

Query: 52 ERDQRTDSDSNTEELELLDPSPANAVVGKIFVSCFVESPYD 93
          +R  + DSDS+ EELELLDPSP NAVVGKI VSC VE P +
Sbjct: 52 DRGAKKDSDSDIEELELLDPSPPNAVVGKISVSCSVEDPIE 92

[Close]
BLAST of Lag0027981 vs. NCBI nr
Match: XP_008455245.1 (PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Cucumis melo])

HSP 1 Score: 55.1 bits (131), Expect = 7.3e-04
Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 58  DSDSNTEELELLDPSPANAVVGKIFVSCFVESPYD 93
           DSDS+ EELELLDPSP NAVVGKI VSC VE P +
Sbjct: 154 DSDSDIEELELLDPSPPNAVVGKISVSCSVEDPIE 188

The following BLAST results are available for this feature:
BLAST of Lag0027981 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038888956.13.3e-0477.14phosphatidylserine decarboxylase proenzyme 2-like [Benincasa hispida][more]
KAA0031515.14.3e-0468.29phosphatidylserine decarboxylase proenzyme 2-like [Cucumis melo var. makuwa][more]
TYK06968.14.3e-0468.29phosphatidylserine decarboxylase proenzyme 2-like [Cucumis melo var. makuwa][more]
XP_008455245.17.3e-0477.14PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Cucumis melo][more]
BLAST of Lag0027981 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..63
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..67

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0027981.1Lag0027981.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006646 phosphatidylethanolamine biosynthetic process
biological_process GO:0016540 protein autoprocessing
cellular_component GO:0016020 membrane
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0004609 phosphatidylserine decarboxylase activity