Lag0027974 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0027974
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionSerine/threonine-protein kinase atg1-like
Locationchr8: 9014158 .. 9014532 (-)
RNA-Seq ExpressionLag0027974
SyntenyLag0027974
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCCTCAAACACTTTAACCGTGAGAGCCTTCGTGAATGGATCAGCGATGTTGTGCTCCGAGGCGATCTGAAAATCCAAGTGGGACAACTTGCGTCGGAACTTAAGAATAGACCTGCGGGAGCACTGCCAAGCAATACAGAAGCCCCTATAGGGAAAGAGCATTGCCACACATTAACTCTCCGCAGTGGAAAACACCTGCCTCCAAGTGATCCTGCGCCAGTGCAGGAAGACTCAACTAAAGATGCGATCAGACCAAGTAATGTTCAAGAGCATGAAGAGAACGCAACTGAAGCAGGCCCAAGAAGGAAGAAAAACAAGTTGAAAAGGAACCGGACGCATACAAGCCTACAATACCCTTTCCGCAAAGACTAA

mRNA sequence

ATGACCCTCAAACACTTTAACCGTGAGAGCCTTCGTGAATGGATCAGCGATGTTGTGCTCCGAGGCGATCTGAAAATCCAAGTGGGACAACTTGCGTCGGAACTTAAGAATAGACCTGCGGGAGCACTGCCAAGCAATACAGAAGCCCCTATAGGGAAAGAGCATTGCCACACATTAACTCTCCGCAGTGGAAAACACCTGCCTCCAAGTGATCCTGCGCCAGTGCAGGAAGACTCAACTAAAGATGCGATCAGACCAAGTAATGTTCAAGAGCATGAAGAGAACGCAACTGAAGCAGGCCCAAGAAGGAAGAAAAACAAGTTGAAAAGGAACCGGACGCATACAAGCCTACAATACCCTTTCCGCAAAGACTAA

Coding sequence (CDS)

ATGACCCTCAAACACTTTAACCGTGAGAGCCTTCGTGAATGGATCAGCGATGTTGTGCTCCGAGGCGATCTGAAAATCCAAGTGGGACAACTTGCGTCGGAACTTAAGAATAGACCTGCGGGAGCACTGCCAAGCAATACAGAAGCCCCTATAGGGAAAGAGCATTGCCACACATTAACTCTCCGCAGTGGAAAACACCTGCCTCCAAGTGATCCTGCGCCAGTGCAGGAAGACTCAACTAAAGATGCGATCAGACCAAGTAATGTTCAAGAGCATGAAGAGAACGCAACTGAAGCAGGCCCAAGAAGGAAGAAAAACAAGTTGAAAAGGAACCGGACGCATACAAGCCTACAATACCCTTTCCGCAAAGACTAA

Protein sequence

MTLKHFNRESLREWISDVVLRGDLKIQVGQLASELKNRPAGALPSNTEAPIGKEHCHTLTLRSGKHLPPSDPAPVQEDSTKDAIRPSNVQEHEENATEAGPRRKKNKLKRNRTHTSLQYPFRKD
Homology
BLAST of Lag0027974 vs. NCBI nr
Match: XP_038889254.1 (uncharacterized protein LOC120079150 [Benincasa hispida])

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-07
Identity = 47/119 (39.50%), Postives = 62/119 (52.10%), Query Frame = 0

Query: 13  EWISDVVLRG------DLKIQVGQLASELKNRPAGALPSNTEAPIG---KEHCHTLTLRS 72
           EW +D +L+       +L+IQVGQ+ASELKNRP   LPSNTE P     KE CH +TLRS
Sbjct: 129 EW-NDALLKSQASSIRNLEIQVGQIASELKNRPPKVLPSNTETPGNSNRKEQCHAVTLRS 188

Query: 73  GKHLPPSDPAPVQED-STKDAIRPSNVQEHEENATEAGPRRKKNKLKRNRTHTSLQYPF 122
           GK L      P   + STK   RP   ++ EE  +++      +          L+ PF
Sbjct: 189 GKSLVKRTVNPRNNNPSTKHTTRPKAFEDQEERTSDSTSHPNPSTSNAGALAVQLKAPF 246

BLAST of Lag0027974 vs. NCBI nr
Match: KAG8485946.1 (hypothetical protein CXB51_020224 [Gossypium anomalum])

HSP 1 Score: 66.2 bits (160), Expect = 2.2e-07
Identity = 40/81 (49.38%), Postives = 52/81 (64.20%), Query Frame = 0

Query: 16 SDVVLRGDLKIQVGQLASELKNRPAGALPSNTE--APIGKEHCHTLTLRSGKHLPPSDPA 75
          S V    +L+ Q+GQLA+ELKNRP GALPS+TE    +GKEHC TLTLRSGK + P+   
Sbjct: 10 SQVTTLKNLQNQMGQLATELKNRPQGALPSDTENTRSLGKEHCKTLTLRSGKIVEPNTIE 69

Query: 76 PVQEDSTKDAIRPSNVQEHEE 95
            +E        P++ Q+ EE
Sbjct: 70 AEKE--------PTDAQDSEE 82

BLAST of Lag0027974 vs. NCBI nr
Match: XP_038874882.1 (uncharacterized protein LOC120067385 [Benincasa hispida])

HSP 1 Score: 66.2 bits (160), Expect = 2.2e-07
Identity = 45/98 (45.92%), Postives = 56/98 (57.14%), Query Frame = 0

Query: 11  LREWI--SDVVLRG------DLKIQVGQLASELKNRPAGALPSNTEAP---IGKEHCHTL 70
           L+E+I  +DV+L+       +L+IQVGQ+ASELKNR  G LPSNT+ P    GKE CH +
Sbjct: 246 LKEYIAQNDVLLKSQASSIRNLEIQVGQIASELKNRQPGVLPSNTKTPRNNNGKEQCHAV 305

Query: 71  TLRSGKHLPPSDPAPVQEDSTKDAIRPSNVQEHEENAT 98
           TLRSGK L      P     +K  I  S  QE     T
Sbjct: 306 TLRSGKSLEERRMNPRNSSPSKKCITHSMDQEERTLGT 343

BLAST of Lag0027974 vs. NCBI nr
Match: XP_030502450.1 (uncharacterized protein LOC115717606 [Cannabis sativa])

HSP 1 Score: 65.1 bits (157), Expect = 4.9e-07
Identity = 37/69 (53.62%), Postives = 46/69 (66.67%), Query Frame = 0

Query: 24  LKIQVGQLASELKNRPAGALPSNTEAP--IGKEHCHTLTLRSGKHLPPSDPAPVQEDSTK 83
           L+ QVGQLASEL+NRP   LPS+TE P   GKEHC  +TLRSGK+L P       E+ T 
Sbjct: 137 LENQVGQLASELRNRPQVTLPSDTENPRRDGKEHCKAVTLRSGKNLEP------HEEETM 196

Query: 84  DAIRPSNVQ 91
           D   P+++Q
Sbjct: 197 DQNEPTSIQ 199

BLAST of Lag0027974 vs. NCBI nr
Match: XP_022158598.1 (uncharacterized protein LOC111025053 [Momordica charantia])

HSP 1 Score: 64.3 bits (155), Expect = 8.4e-07
Identity = 37/79 (46.84%), Postives = 48/79 (60.76%), Query Frame = 0

Query: 23  DLKIQVGQLASELKNRPAGALPSNTEAP--IGKEHCHTLTLRSGKHLPPSDP-APVQEDS 82
           +L++QVGQLA +LK+RP GALPS+TE P    KE C+ LTLRSGK LPP+ P AP     
Sbjct: 275 NLELQVGQLAMDLKSRPVGALPSDTEVPKRDSKEQCNALTLRSGKALPPTHPNAPTLTKE 334

Query: 83  TKDAIRPSNVQEHEENATE 99
               ++     E +    E
Sbjct: 335 PAQIVQGEPQSEQDSEPAE 353

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038889254.11.7e-0739.50uncharacterized protein LOC120079150 [Benincasa hispida][more]
KAG8485946.12.2e-0749.38hypothetical protein CXB51_020224 [Gossypium anomalum][more]
XP_038874882.12.2e-0745.92uncharacterized protein LOC120067385 [Benincasa hispida][more]
XP_030502450.14.9e-0753.62uncharacterized protein LOC115717606 [Cannabis sativa][more]
XP_022158598.18.4e-0746.84uncharacterized protein LOC111025053 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..124
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0027974.1Lag0027974.1mRNA