Lag0027971 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0027971
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Protein SDA1
Location	chr8: 8950667 .. 8951086 (-)
RNA-Seq Expression	Lag0027971
Synteny	Lag0027971

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTCGGCCCCTGAGAAGCTAAGCCTATCATTGCTACAATTGAAGATGAAGGTTGATCCAACAGGGTACGAGTCTGAGTTAGTTCTCATCTACAACCAATTCAAATCATCTATGGAGCTATTTAAGCAACAAGCATCTCTTCACTTCAACTCTATCGGTGGCATTGGTAGCGACCCTTCAGTGGCTAAGGACCTTAGTGACAGAGCGACGTTTTTGGCTCACGTTACTCCATTTTACCCTAAACATCTTAATGAATTTCCAAAACAACTAGCTCATTTGCTTAATATTAAGGATATCAGGCCTATGGCCCAAGACAAGGAGGAACCCAAACCTATGGGCCAGCTATCGGAGCCCATTAACAGAAGGAAAAGTTCATCAGTCCAGAAGGTTCTTGTAAACAATACAGCTGCAAGATAA

mRNA sequence

ATGAATTCGGCCCCTGAGAAGCTAAGCCTATCATTGCTACAATTGAAGATGAAGGTTGATCCAACAGGGTACGAGTCTGAGTTAGTTCTCATCTACAACCAATTCAAATCATCTATGGAGCTATTTAAGCAACAAGCATCTCTTCACTTCAACTCTATCGGTGGCATTGGTAGCGACCCTTCAGTGGCTAAGGACCTTAGTGACAGAGCGACGTTTTTGGCTCACGTTACTCCATTTTACCCTAAACATCTTAATGAATTTCCAAAACAACTAGCTCATTTGCTTAATATTAAGGATATCAGGCCTATGGCCCAAGACAAGGAGGAACCCAAACCTATGGGCCAGCTATCGGAGCCCATTAACAGAAGGAAAAGTTCATCAGTCCAGAAGGTTCTTGTAAACAATACAGCTGCAAGATAA

Coding sequence (CDS)

ATGAATTCGGCCCCTGAGAAGCTAAGCCTATCATTGCTACAATTGAAGATGAAGGTTGATCCAACAGGGTACGAGTCTGAGTTAGTTCTCATCTACAACCAATTCAAATCATCTATGGAGCTATTTAAGCAACAAGCATCTCTTCACTTCAACTCTATCGGTGGCATTGGTAGCGACCCTTCAGTGGCTAAGGACCTTAGTGACAGAGCGACGTTTTTGGCTCACGTTACTCCATTTTACCCTAAACATCTTAATGAATTTCCAAAACAACTAGCTCATTTGCTTAATATTAAGGATATCAGGCCTATGGCCCAAGACAAGGAGGAACCCAAACCTATGGGCCAGCTATCGGAGCCCATTAACAGAAGGAAAAGTTCATCAGTCCAGAAGGTTCTTGTAAACAATACAGCTGCAAGATAA

Protein sequence

MNSAPEKLSLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDPSVAKDLSDRATFLAHVTPFYPKHLNEFPKQLAHLLNIKDIRPMAQDKEEPKPMGQLSEPINRRKSSSVQKVLVNNTAAR

Homology

[Close]

BLAST of Lag0027971 vs. NCBI nr
Match: XP_022991552.1 (protein SDA1 homolog [Cucurbita maxima])

HSP 1 Score: 164.1 bits (414), Expect = 8.7e-37
Identity = 82/96 (85.42%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 1  MNSAPEKLSLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDP 60
          MNS PE+LSL LLQ KMK DP GYE ELVL+YNQFKSSMELFKQQASLHF S+GGIGSDP
Sbjct: 1  MNSTPERLSLPLLQSKMKCDPEGYECELVLLYNQFKSSMELFKQQASLHFTSVGGIGSDP 60

Query: 61 SVAKDLSDRATFLAHVTPFYPKHLNEFPKQLAHLLN 97
          SVAKDLSDRA FLAHVTPFY KHL EFPKQLA LLN
Sbjct: 61 SVAKDLSDRAMFLAHVTPFYSKHLVEFPKQLADLLN 96

[Close]

BLAST of Lag0027971 vs. NCBI nr
Match: KAG7014500.1 (Protein SDA1-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 164.1 bits (414), Expect = 8.7e-37
Identity = 82/96 (85.42%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 1  MNSAPEKLSLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDP 60
          MNS PE+LSL LLQ KMK DP GYE ELVL+YNQFKSSMELFKQQASLHF S+GGIGSDP
Sbjct: 1  MNSTPERLSLPLLQSKMKCDPEGYECELVLLYNQFKSSMELFKQQASLHFTSVGGIGSDP 60

Query: 61 SVAKDLSDRATFLAHVTPFYPKHLNEFPKQLAHLLN 97
          SVAKDLSDRA FLAHVTPFY KHL EFPKQLA LLN
Sbjct: 61 SVAKDLSDRAMFLAHVTPFYSKHLVEFPKQLADLLN 96

[Close]

BLAST of Lag0027971 vs. NCBI nr
Match: XP_023548412.1 (protein SDA1 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 164.1 bits (414), Expect = 8.7e-37
Identity = 82/96 (85.42%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 1  MNSAPEKLSLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDP 60
          MNS PE+LSL LLQ KMK DP GYE ELVL+YNQFKSSMELFKQQASLHF S+GGIGSDP
Sbjct: 1  MNSTPERLSLPLLQSKMKCDPEGYECELVLLYNQFKSSMELFKQQASLHFTSVGGIGSDP 60

Query: 61 SVAKDLSDRATFLAHVTPFYPKHLNEFPKQLAHLLN 97
          SVAKDLSDRA FLAHVTPFY KHL EFPKQLA LLN
Sbjct: 61 SVAKDLSDRAMFLAHVTPFYSKHLVEFPKQLADLLN 96

[Close]

BLAST of Lag0027971 vs. NCBI nr
Match: KAG6575976.1 (Protein SDA1-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 164.1 bits (414), Expect = 8.7e-37
Identity = 82/96 (85.42%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 1  MNSAPEKLSLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDP 60
          MNS PE+LSL LLQ KMK DP GYE ELVL+YNQFKSSMELFKQQASLHF S+GGIGSDP
Sbjct: 1  MNSTPERLSLPLLQSKMKCDPEGYECELVLLYNQFKSSMELFKQQASLHFTSVGGIGSDP 60

Query: 61 SVAKDLSDRATFLAHVTPFYPKHLNEFPKQLAHLLN 97
          SVAKDLSDRA FLAHVTPFY KHL EFPKQLA LLN
Sbjct: 61 SVAKDLSDRAMFLAHVTPFYSKHLVEFPKQLADLLN 96

[Close]

BLAST of Lag0027971 vs. NCBI nr
Match: XP_022953635.1 (protein SDA1 homolog [Cucurbita moschata])

HSP 1 Score: 164.1 bits (414), Expect = 8.7e-37
Identity = 82/96 (85.42%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 1  MNSAPEKLSLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDP 60
          MNS PE+LSL LLQ KMK DP GYE ELVL+YNQFKSSMELFKQQASLHF S+GGIGSDP
Sbjct: 1  MNSTPERLSLPLLQSKMKCDPEGYECELVLLYNQFKSSMELFKQQASLHFTSVGGIGSDP 60

Query: 61 SVAKDLSDRATFLAHVTPFYPKHLNEFPKQLAHLLN 97
          SVAKDLSDRA FLAHVTPFY KHL EFPKQLA LLN
Sbjct: 61 SVAKDLSDRAMFLAHVTPFYSKHLVEFPKQLADLLN 96

[Close]

BLAST of Lag0027971 vs. ExPASy Swiss-Prot
Match: Q5XIQ5 (Protein SDA1 homolog OS=Rattus norvegicus OX=10116 GN=Sdad1 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.4e-07
Identity = 31/88 (35.23%), Postives = 49/88 (55.68%), Query Frame = 0


Query: 9  SLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDPSVAKDLSD 68
          +L  LQ  +K DP  Y  E +  YN +KS+ME+FK Q +               +K+L++
Sbjct: 12 NLPQLQNLIKRDPPAYVEEFLQQYNHYKSNMEIFKLQPN-------------KPSKELAE 71

Query: 69 RATFLAHVTPFYPKHLNEFPKQLAHLLN 97
             F+A +   YP+HL+EFP++L  LL+
Sbjct: 72 LVMFMAQIGHCYPEHLSEFPQELKDLLS 86

[Close]

BLAST of Lag0027971 vs. ExPASy Swiss-Prot
Match: Q80UZ2 (Protein SDA1 homolog OS=Mus musculus OX=10090 GN=Sdad1 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 9.8e-07
Identity = 30/88 (34.09%), Postives = 48/88 (54.55%), Query Frame = 0


Query: 9  SLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDPSVAKDLSD 68
          +L  LQ  +K DP  Y  E +  YN +KS+ME+FK Q +               +K+L++
Sbjct: 12 NLPQLQNLIKRDPPAYVEEFLQQYNHYKSNMEIFKLQPN-------------KPSKELAE 71

Query: 69 RATFLAHVTPFYPKHLNEFPKQLAHLLN 97
             F+A +   YP+HL+ FP++L  LL+
Sbjct: 72 LVMFMAQIGQCYPEHLSNFPQELKDLLS 86

[Close]

BLAST of Lag0027971 vs. ExPASy Swiss-Prot
Match: A5D7C2 (Protein SDA1 homolog OS=Bos taurus OX=9913 GN=SDAD1 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.7e-06
Identity = 29/88 (32.95%), Postives = 49/88 (55.68%), Query Frame = 0


Query: 9  SLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDPSVAKDLSD 68
          +L  LQ  +K DP  Y  E +  YN +KS++E+FK Q +               +K+L++
Sbjct: 12 NLPQLQNLIKRDPPAYVEEFLQQYNHYKSNVEIFKLQPN-------------KPSKELAE 71

Query: 69 RATFLAHVTPFYPKHLNEFPKQLAHLLN 97
             F+A ++  YP+HL+ FP++L  LL+
Sbjct: 72 LVMFMAQISHCYPEHLSNFPQELKDLLS 86

[Close]

BLAST of Lag0027971 vs. ExPASy Swiss-Prot
Match: Q55DE2 (Protein SDA1 homolog OS=Dictyostelium discoideum OX=44689 GN=sdad1 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.8e-06
Identity = 32/97 (32.99%), Postives = 52/97 (53.61%), Query Frame = 0


Query: 10  LSLLQLK--MKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDPSVAKDLS 69
           L LLQL+   K DP+ Y+ E +L Y  + + +++F+ + +  F             K  S
Sbjct: 6   LDLLQLQNLTKRDPSAYKEEFLLQYQHYLTQLQIFQLKPTKEF-------------KHFS 65

Query: 70  DRATFLAHVTPFYPKHLNEFPKQLAHLL--NIKDIRP 103
              ++L+HV   YPK L+EFPKQ++ LL  N  ++ P
Sbjct: 66  QLVSYLSHVCVCYPKELSEFPKQISDLLENNCNNLEP 89

[Close]

BLAST of Lag0027971 vs. ExPASy Swiss-Prot
Match: Q9NVU7 (Protein SDA1 homolog OS=Homo sapiens OX=9606 GN=SDAD1 PE=1 SV=3)

HSP 1 Score: 50.1 bits (118), Expect = 2.4e-05
Identity = 27/88 (30.68%), Postives = 49/88 (55.68%), Query Frame = 0


Query: 9  SLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDPSVAKDLSD 68
          +L  LQ  +K DP  Y  E +  YN +KS++E+FK Q +               +K+L++
Sbjct: 12 NLPQLQNLIKRDPPAYIEEFLQQYNHYKSNVEIFKLQPN-------------KPSKELAE 71

Query: 69 RATFLAHVTPFYPKHLNEFPKQLAHLLN 97
             F+A ++  YP++L+ FP+++  LL+
Sbjct: 72 LVMFMAQISHCYPEYLSNFPQEVKDLLS 86

The following BLAST results are available for this feature:

BLAST of Lag0027971 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022991552.1	8.7e-37	85.42	protein SDA1 homolog [Cucurbita maxima]	[more]
KAG7014500.1	8.7e-37	85.42	Protein SDA1-like protein [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023548412.1	8.7e-37	85.42	protein SDA1 homolog [Cucurbita pepo subsp. pepo]	[more]
KAG6575976.1	8.7e-37	85.42	Protein SDA1-like protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022953635.1	8.7e-37	85.42	protein SDA1 homolog [Cucurbita moschata]	[more]

BLAST of Lag0027971 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5XIQ5	3.4e-07	35.23	Protein SDA1 homolog OS=Rattus norvegicus OX=10116 GN=Sdad1 PE=1 SV=1	[more]
Q80UZ2	9.8e-07	34.09	Protein SDA1 homolog OS=Mus musculus OX=10090 GN=Sdad1 PE=1 SV=1	[more]
A5D7C2	1.7e-06	32.95	Protein SDA1 homolog OS=Bos taurus OX=9913 GN=SDAD1 PE=2 SV=1	[more]
Q55DE2	2.8e-06	32.99	Protein SDA1 homolog OS=Dictyostelium discoideum OX=44689 GN=sdad1 PE=3 SV=1	[more]
Q9NVU7	2.4e-05	30.68	Protein SDA1 homolog OS=Homo sapiens OX=9606 GN=SDAD1 PE=1 SV=3	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012977	Uncharacterised domain NUC130/133, N-terminal	PFAM	PF08158	NUC130_3NT	coord: 72..96 e-value: 6.9E-7 score: 29.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..139
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..139
None	No IPR available	PANTHER	PTHR12730:SF0	PROTEIN SDA1 HOMOLOG	coord: 7..96
IPR027312	Sda1	PANTHER	PTHR12730	HSDA/SDA1-RELATED	coord: 7..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0027971.1	Lag0027971.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030036	actin cytoskeleton organization
biological_process	GO:0015031	protein transport
biological_process	GO:0042273	ribosomal large subunit biogenesis
biological_process	GO:0000055	ribosomal large subunit export from nucleus
cellular_component	GO:0005730	nucleolus