Lag0027962 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0027962
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr8: 8722419 .. 8722793 (+)
RNA-Seq ExpressionLag0027962
SyntenyLag0027962
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATACGGAACCAACTGGATATCGGATGATCTTTGTCTCAAGGTTCGCTCGCCGGTTACCTTGGCGGCAGACGCGGGTAGCCGATCTTGTTACAACCTCTAGGCAGTGGAATGTGGGCCTTTTGTGGCATCACTTCAGCCCTCATGAGGTGAGTCTTATTCTTACTATTCCTTTACGAAATGGGTTGGCAGAGGATAGAATGATCTGGCATTATGAGAAATCTGGACTATTTTCGGTTAAAAGTGGTTATCGGTTAGGCCAAATGATTGCACTTGAGCAAGAATTGTCCTCCTCCTCGCATCATTCTATCCTTAGTTGGTGGAAGGGGTGTTGGAAAATGACGATCCCTAACAAAATCAAAATTTTCCTATGA

mRNA sequence

ATGTATACGGAACCAACTGGATATCGGATGATCTTTGTCTCAAGGTTCGCTCGCCGGTTACCTTGGCGGCAGACGCGGGTAGCCGATCTTGTTACAACCTCTAGGCAGTGGAATGTGGGCCTTTTGTGGCATCACTTCAGCCCTCATGAGGTGAGTCTTATTCTTACTATTCCTTTACGAAATGGGTTGGCAGAGGATAGAATGATCTGGCATTATGAGAAATCTGGACTATTTTCGGTTAAAAGTGGTTATCGGTTAGGCCAAATGATTGCACTTGAGCAAGAATTGTCCTCCTCCTCGCATCATTCTATCCTTAGTTGGTGGAAGGGGTGTTGGAAAATGACGATCCCTAACAAAATCAAAATTTTCCTATGA

Coding sequence (CDS)

ATGTATACGGAACCAACTGGATATCGGATGATCTTTGTCTCAAGGTTCGCTCGCCGGTTACCTTGGCGGCAGACGCGGGTAGCCGATCTTGTTACAACCTCTAGGCAGTGGAATGTGGGCCTTTTGTGGCATCACTTCAGCCCTCATGAGGTGAGTCTTATTCTTACTATTCCTTTACGAAATGGGTTGGCAGAGGATAGAATGATCTGGCATTATGAGAAATCTGGACTATTTTCGGTTAAAAGTGGTTATCGGTTAGGCCAAATGATTGCACTTGAGCAAGAATTGTCCTCCTCCTCGCATCATTCTATCCTTAGTTGGTGGAAGGGGTGTTGGAAAATGACGATCCCTAACAAAATCAAAATTTTCCTATGA

Protein sequence

MYTEPTGYRMIFVSRFARRLPWRQTRVADLVTTSRQWNVGLLWHHFSPHEVSLILTIPLRNGLAEDRMIWHYEKSGLFSVKSGYRLGQMIALEQELSSSSHHSILSWWKGCWKMTIPNKIKIFL
Homology
BLAST of Lag0027962 vs. NCBI nr
Match: XP_030505314.1 (uncharacterized protein LOC115720302 [Cannabis sativa])

HSP 1 Score: 98.6 bits (244), Expect = 4.0e-17
Identity = 45/103 (43.69%), Postives = 61/103 (59.22%), Query Frame = 0

Query: 21   PWRQTRVADLVTTSRQWNVGLLWHHFSPHEVSLILTIPLRNGLAEDRMIWHYEKSGLFSV 80
            P     V+DL+TT R WN+  L  HF   ++  IL +PL    +ED++IWH+  SG++SV
Sbjct: 966  PDNNLHVSDLITTDRTWNITALKRHFLSIDIDRILQLPLCQYASEDKLIWHHSASGIYSV 1025

Query: 81   KSGYRLGQMIALEQELSSSSHHSILSWWKGCWKMTIPNKIKIF 124
            KSGY L    +L +  S S   S  SWW   WK+ +P KIKIF
Sbjct: 1026 KSGYHLAS--SLRESRSPSHSQSQTSWWNRFWKLKLPRKIKIF 1066

BLAST of Lag0027962 vs. NCBI nr
Match: XP_024037590.1 (uncharacterized protein LOC112097210 [Citrus clementina])

HSP 1 Score: 97.8 bits (242), Expect = 6.9e-17
Identity = 43/100 (43.00%), Postives = 61/100 (61.00%), Query Frame = 0

Query: 25  TRVADLVTTSRQWNVGLLWHHFSPHEVSLILTIPLRNGLAEDRMIWHYEKSGLFSVKSGY 84
           T VA+L+   +QW   L+  HF P +   I+ IPL     ED++IWHY+K G +SVKSGY
Sbjct: 757 TTVAELIDEKQQWREDLILQHFRPEDAEAIMQIPLPKRPKEDQLIWHYDKKGYYSVKSGY 816

Query: 85  RLGQMIALEQELSSSSHHSILSWWKGCWKMTIPNKIKIFL 125
           ++   I   ++ S S+H   L  W+  WK+ IP K+KIFL
Sbjct: 817 QVAMRIKFPEDPSCSNHDQNL--WRFIWKLAIPEKVKIFL 854

BLAST of Lag0027962 vs. NCBI nr
Match: XP_030479133.1 (uncharacterized protein LOC115696372 [Cannabis sativa])

HSP 1 Score: 97.1 bits (240), Expect = 1.2e-16
Identity = 47/97 (48.45%), Postives = 62/97 (63.92%), Query Frame = 0

Query: 27   VADLVTTSRQWNVGLLWHHFSPHEVSLILTIPLRNGLAEDRMIWHYEKSGLFSVKSGYRL 86
            VAD +T +R+WN+  L   FS  +V  IL IPL      DR IWHYE SG +SV SGY L
Sbjct: 923  VADYITATREWNIECLQSDFSTPDVDNILKIPLSFLPVNDRWIWHYEDSGDYSVSSGYTL 982

Query: 87   GQMIALEQELSSSSHHSILSWWKGCWKMTIPNKIKIF 124
               +  E++LSS S H+  +WWK  WK+ +P+K+KIF
Sbjct: 983  ASSLG-EEDLSSCS-HTQETWWKSFWKLNLPSKVKIF 1017

BLAST of Lag0027962 vs. NCBI nr
Match: XP_030483481.1 (uncharacterized protein LOC115700065 [Cannabis sativa])

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-16
Identity = 47/97 (48.45%), Postives = 60/97 (61.86%), Query Frame = 0

Query: 27   VADLVTTSRQWNVGLLWHHFSPHEVSLILTIPLRNGLAEDRMIWHYEKSGLFSVKSGYRL 86
            VA+L+T  RQWN  LL   FS  +V  ILTIPL    A D +IWHY  SG++ V SGY  
Sbjct: 919  VANLITEDRQWNKQLLDEFFSSIDVDRILTIPLSYFSANDHLIWHYHSSGIYKVHSGYH- 978

Query: 87   GQMIALEQELSSSSHHSILSWWKGCWKMTIPNKIKIF 124
              + +LE    SS+ +S  +WWK  WK+ +P KIKIF
Sbjct: 979  -HLASLEDSDLSSTSNSSTNWWKYFWKLQLPQKIKIF 1013

BLAST of Lag0027962 vs. NCBI nr
Match: XP_030495196.1 (uncharacterized protein LOC115710989 [Cannabis sativa])

HSP 1 Score: 95.9 bits (237), Expect = 2.6e-16
Identity = 44/99 (44.44%), Postives = 62/99 (62.63%), Query Frame = 0

Query: 25  TRVADLVTTSRQWNVGLLWHHFSPHEVSLILTIPLRNGLAEDRMIWHYEKSGLFSVKSGY 84
           T VA+L+T  RQW+V LL  +F P +V   LTIPL    + D ++WH+  +G+++V+SGY
Sbjct: 724 TVVANLITEDRQWDVALLNQYFIPADVERTLTIPLSYFPSNDCLVWHHTNNGIYTVQSGY 783

Query: 85  RLGQMIALEQELSSSSHHSILSWWKGCWKMTIPNKIKIF 124
            L   +A +   SSSS  S   WWK  W + +P KIKIF
Sbjct: 784 HLASSLAEQPHSSSSSSES--KWWKSFWSLQLPEKIKIF 820

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_030505314.14.0e-1743.69uncharacterized protein LOC115720302 [Cannabis sativa][more]
XP_024037590.16.9e-1743.00uncharacterized protein LOC112097210 [Citrus clementina][more]
XP_030479133.11.2e-1648.45uncharacterized protein LOC115696372 [Cannabis sativa][more]
XP_030483481.11.5e-1648.45uncharacterized protein LOC115700065 [Cannabis sativa][more]
XP_030495196.12.6e-1644.44uncharacterized protein LOC115710989 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46736FAMILY NOT NAMEDcoord: 40..124
NoneNo IPR availablePANTHERPTHR46736:SF6SUBFAMILY NOT NAMEDcoord: 40..124

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0027962.1Lag0027962.1mRNA