Lag0027961 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0027961
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr8: 8721081 .. 8722002 (+)
RNA-Seq ExpressionLag0027961
SyntenyLag0027961
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGATAGTATTAATCCCTAAGAAGAAGTGTCCCAGGCGTGTTTCAGAATACTGGTTGATATCATTGTGCAATGTGACTTATAAGCTAGTGTCAAAGGTACTGGTGAATCGTATGAAAGGTATGCTCAATCAACTGATATCCCAACACCAGAGTGTGTTTATCCTTGGGCGATGTGTGGTTGATAATGCTATCTTGGGTACGAATGCATTCATGCGCTGAGAACAAAGCGAGATGGACGAACGGGTTGGGCCTCGCTCAAGGTGGACATGAGTAAAGCCTATGACAGAGTGGAGTGGTGCTTTCTGGAGAGGATTATGTTGAAAATGGGTTTTGCTCTGGAGTGGGGTGGAGTTAGTTATTCTCTGTATTTCATCGGTCCGGTTCTCCTTTAATGTGAATGGGGTGAGATGTGGGGATGTGGTTCCAAGTAGAGGGTTGAGGCAGGGGGATCTGTTGTCTCCATACGTATTCCTGCTGTGTGCTAAGGGGCTTTCCTATATGCTTCGGGAGGTGGAGAAGTCGAATGCTATATAGGGATTGAGGGGTAGCTCGATATGATCTAGGAGTCTCACATTTATTTTTCACTGATGATAGTTTGTTGTTTTTCCGAGCTAAGGATAGTGAGGCTCGTATTGTGCATGACATACTTCGCCAATACGAGTGTGCTTCAGACCAGACTGTCAACTTGGATAAGTCTATAATTTCTTTTAGTCCTAACACAGAATCGAACATTCAGGTGCAGATCAACCAGATGTTACAGGTTCAGGTTACGGCATGTCATCGCCAATATCTGGGGCTTCCATCTTTCATGCCTCGAAACAGGTCGGGGACGCTTGGATTTATTAAGGATTGTGTTTGGCAGCAAATACAAGGCTGGAAGGGAAAGCTCTTTTTAGTAGGGGCAGGGAAGTGCTTCTGA

mRNA sequence

ATGATGATAGTATTAATCCCTAAGAAGAAGTGTCCCAGGCGTGTTTCAGAATACTGGTTGATATCATTGTGCAATGTGACTTATAAGCTAGTGTCAAAGGTACTGGTGAATCGTATGAAAGGTATGCTCAATCAACTGATATCCCAACACCAGAGTGTGTTTATCCTTGGGCGATGTGTGGTTGATAATGCTATCTTGGTTATTCTCTGTATTTCATCGGTCCGGTTCTCCTTTAATGTGAATGGGGTGAGATGTGGGGATGTGGTTCCAAGTAGAGGGTTGAGGCAGGGGGATCTGTTGTCTCCATACGTATTCCTGCTGTGTGCTAAGGGGCTTTCCTATATGCTTCGGGAGGATAGTGAGGCTCGTATTGTGCATGACATACTTCGCCAATACGAGTGTGCTTCAGACCAGACTGTCAACTTGGATAAGTCTATAATTTCTTTTAGTCCTAACACAGAATCGAACATTCAGGTGCAGATCAACCAGATGTTACAGGTTCAGGTTACGGCATGTCATCGCCAATATCTGGGGCTTCCATCTTTCATGCCTCGAAACAGGTCGGGGACGCTTGGATTTATTAAGGATTGTGTTTGGCAGCAAATACAAGGCTGGAAGGGAAAGCTCTTTTTAGTAGGGGCAGGGAAGTGCTTCTGA

Coding sequence (CDS)

ATGATGATAGTATTAATCCCTAAGAAGAAGTGTCCCAGGCGTGTTTCAGAATACTGGTTGATATCATTGTGCAATGTGACTTATAAGCTAGTGTCAAAGGTACTGGTGAATCGTATGAAAGGTATGCTCAATCAACTGATATCCCAACACCAGAGTGTGTTTATCCTTGGGCGATGTGTGGTTGATAATGCTATCTTGGTTATTCTCTGTATTTCATCGGTCCGGTTCTCCTTTAATGTGAATGGGGTGAGATGTGGGGATGTGGTTCCAAGTAGAGGGTTGAGGCAGGGGGATCTGTTGTCTCCATACGTATTCCTGCTGTGTGCTAAGGGGCTTTCCTATATGCTTCGGGAGGATAGTGAGGCTCGTATTGTGCATGACATACTTCGCCAATACGAGTGTGCTTCAGACCAGACTGTCAACTTGGATAAGTCTATAATTTCTTTTAGTCCTAACACAGAATCGAACATTCAGGTGCAGATCAACCAGATGTTACAGGTTCAGGTTACGGCATGTCATCGCCAATATCTGGGGCTTCCATCTTTCATGCCTCGAAACAGGTCGGGGACGCTTGGATTTATTAAGGATTGTGTTTGGCAGCAAATACAAGGCTGGAAGGGAAAGCTCTTTTTAGTAGGGGCAGGGAAGTGCTTCTGA

Protein sequence

MMIVLIPKKKCPRRVSEYWLISLCNVTYKLVSKVLVNRMKGMLNQLISQHQSVFILGRCVVDNAILVILCISSVRFSFNVNGVRCGDVVPSRGLRQGDLLSPYVFLLCAKGLSYMLREDSEARIVHDILRQYECASDQTVNLDKSIISFSPNTESNIQVQINQMLQVQVTACHRQYLGLPSFMPRNRSGTLGFIKDCVWQQIQGWKGKLFLVGAGKCF
Homology
BLAST of Lag0027961 vs. NCBI nr
Match: XP_030924930.1 (uncharacterized protein LOC115951962 [Quercus lobata])

HSP 1 Score: 172.2 bits (435), Expect = 5.0e-39
Identity = 105/271 (38.75%), Postives = 147/271 (54.24%), Query Frame = 0

Query: 3   IVLIPKKKCPRRVSEYWLISLCNVTYKLVSKVLVNRMKGMLNQLISQHQSVFILGRCVVD 62
           I LI K K P++VS++  ISLCNV YKL++KVLVNR+K +L  ++S  QS F+ GR + D
Sbjct: 345 IALITKIKDPKKVSDFRPISLCNVVYKLIAKVLVNRLKLILPYVVSDSQSAFLSGRLITD 404

Query: 63  NAIL-----------------------------------------------------VIL 122
           N ++                                                     ++ 
Sbjct: 405 NVLVAFETLHFLKRKTQGKDGYMTLKLDISKAYDRVEWDFLERAMLHLGFAGSFLATIMS 464

Query: 123 CISSVRFSFNVNGVRCGDVVPSRGLRQGDLLSPYVFLLCAKGLSYMLR----EDSEARIV 182
           CI SV +S  +NGV    + PSRGLRQGD LSPY+FLLCA GL  +L     E+SE +++
Sbjct: 465 CIKSVSYSVLLNGVPGRTIKPSRGLRQGDPLSPYLFLLCAMGLQGLLHKAESEESECQVI 524

Query: 183 HDILRQYECASDQTVNLDKSIISFSPNTESNIQVQINQMLQVQVTACHRQYLGLPSFMPR 217
            D+L  YE  S Q +N DK+ I FS NT  ++QV+I  +L V     + +YLGLP+F+ R
Sbjct: 525 LDLLSIYERGSGQKINKDKTNIFFSSNTHHDVQVRIQHLLGVLAIRQYERYLGLPAFVGR 584

BLAST of Lag0027961 vs. NCBI nr
Match: XP_030945935.1 (uncharacterized protein LOC115970438 [Quercus lobata])

HSP 1 Score: 171.4 bits (433), Expect = 8.6e-39
Identity = 106/270 (39.26%), Postives = 142/270 (52.59%), Query Frame = 0

Query: 3   IVLIPKKKCPRRVSEYWLISLCNVTYKLVSKVLVNRMKGMLNQLISQHQSVFILGRCVVD 62
           IVL+PK + P+RV+EY  ISLCNV YKL SK L NR+K +L  +IS  QS F+ GR + D
Sbjct: 373 IVLVPKTESPKRVTEYRPISLCNVIYKLASKTLANRLKKILPSIISDTQSAFVNGRLITD 432

Query: 63  NAI-----------------------------------------------------LVIL 122
           N +                                                     L++ 
Sbjct: 433 NVLVAFEAMHQINLKKSGTKGEMALKLDMSKAYDRVEWACLEKIMEKLGFHSRWRSLMMQ 492

Query: 123 CISSVRFSFNVNGVRCGDVVPSRGLRQGDLLSPYVFLLCAKGLSYMLRE---DSEARIVH 182
           CISSV ++  VNG   G ++PSRGLRQGD LSPY+FL+CA+GLS ++++   D     V 
Sbjct: 493 CISSVTYAVRVNGKPSGHIIPSRGLRQGDPLSPYLFLICAEGLSALIKKATADGLLEGVS 552

Query: 183 DILRQYECASDQTVNLDKSIISFSPNTESNIQVQINQMLQVQVTACHRQYLGLPSFMPRN 217
            +LR YE AS Q +N  K+ + FSPNT   IQ +I      QV   H +YLGLPS + RN
Sbjct: 553 KVLRTYEQASGQQLNRAKTSLFFSPNTVQEIQEEIKVRFGAQVIRQHEKYLGLPSLVGRN 612

BLAST of Lag0027961 vs. NCBI nr
Match: XP_010673168.1 (PREDICTED: uncharacterized protein LOC104889608 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 169.1 bits (427), Expect = 4.3e-38
Identity = 103/276 (37.32%), Postives = 147/276 (53.26%), Query Frame = 0

Query: 3    IVLIPKKKCPRRVSEYWLISLCNVTYKLVSKVLVNRMKGMLNQLISQHQSVFILGRCVVD 62
            I LIPK K P  VSE+  ISLCNV +KLV+KVL NR+K +L  ++S++QS F+ GR + D
Sbjct: 876  IALIPKVKSPTLVSEFRPISLCNVIFKLVTKVLANRLKTILPGVVSENQSAFVPGRLITD 935

Query: 63   NAIL-----------------------------------------------------VIL 122
            NA++                                                     V+ 
Sbjct: 936  NALIALELFHSMKYRCKGNRGFVAMKLDMSKAYDRVEWSFLRSLLDKMGFADSWVKCVMD 995

Query: 123  CISSVRFSFNVNGVRCGDVVPSRGLRQGDLLSPYVFLLCAKGLSYMLRED---------S 182
            C+SSVR+SF VNG  CG V+PSRGLRQGD +SPY+F+L A   S ++R+           
Sbjct: 996  CVSSVRYSFVVNGDVCGSVIPSRGLRQGDPISPYLFILVADAFSALVRKAVADKSIHGIQ 1055

Query: 183  EARIVHDILRQYECASDQTVNLDKSIISFSPNTESNIQVQINQMLQVQVTACHRQYLGLP 217
            E  ++ DIL +YE AS Q +N++KS +SFS    S  + ++ + L ++    H +YLG+P
Sbjct: 1056 ECSVIVDILNKYEAASGQKINIEKSEVSFSKGVSSVQKKELVEFLAMRQVDRHSKYLGIP 1115

BLAST of Lag0027961 vs. NCBI nr
Match: XP_030508852.1 (uncharacterized protein LOC115723496 [Cannabis sativa])

HSP 1 Score: 167.5 bits (423), Expect = 1.2e-37
Identity = 102/300 (34.00%), Postives = 144/300 (48.00%), Query Frame = 0

Query: 2   MIVLIPKKKCPRRVSEYWLISLCNVTYKLVSKVLVNRMKGMLNQLISQHQSVFILGRCVV 61
           ++ LIPK K P ++S+Y  ISLCNV YKLVSK +V R+K  L+Q+IS++QS F+  R + 
Sbjct: 501 LVTLIPKVKKPSQISQYRPISLCNVLYKLVSKAIVMRLKPFLSQVISEYQSAFLSQRLIT 560

Query: 62  DNAI-----------------------------------------------------LVI 121
           DN +                                                     L++
Sbjct: 561 DNILVAFELLHSLKNRKRGSKGFAAIKLDMSKAFDRVEWHFVAQVMIKMGFGTVMVELIL 620

Query: 122 LCISSVRFSFNVNGVRCGDVVPSRGLRQGDLLSPYVFLLCAKGLSYMLR----------- 181
            C+ SV +SF +NG   G V+PSRG+RQGD LSPY+FL+CA+GLS +L+           
Sbjct: 621 RCLQSVSYSFLLNGTIQGQVIPSRGIRQGDPLSPYLFLICAEGLSRLLQYEELAGSLEGL 680

Query: 182 ---------------EDS---------EARIVHDILRQYECASDQTVNLDKSIISFSPNT 214
                          +DS          AR +H  L  Y  AS Q +N +K ++SFS NT
Sbjct: 681 KISRSAPSVSHLFFADDSVLFCRANQQSARAIHRCLITYSRASGQVINPEKCVLSFSENT 740

BLAST of Lag0027961 vs. NCBI nr
Match: XP_030963678.1 (uncharacterized protein LOC115984820 [Quercus lobata])

HSP 1 Score: 164.5 bits (415), Expect = 1.0e-36
Identity = 101/302 (33.44%), Postives = 148/302 (49.01%), Query Frame = 0

Query: 3   IVLIPKKKCPRRVSEYWLISLCNVTYKLVSKVLVNRMKGMLNQLISQHQSVFILGRCVVD 62
           IVLIPK K P +V++Y  ISLCNV YK+ SK + NRMK +L ++I ++QS F+ GR + D
Sbjct: 498 IVLIPKTKNPEKVTDYRPISLCNVAYKIASKAVANRMKLVLQEIIGENQSAFVAGRLITD 557

Query: 63  NAI-----------------------------------------------------LVIL 122
           N +                                                     LV+ 
Sbjct: 558 NVLVAHELMSHISKKKKGNCGEMAIKLDMRKAYDRVEWGCLQQIMQKLGFHDKWISLVMR 617

Query: 123 CISSVRFSFNVNGVRCGDVVPSRGLRQGDLLSPYVFLLCAKGLSYMLRED---------- 182
           C++SV++   VNG+ CG + P+RGLRQGD LSPY+FL+CA+GLS +L +           
Sbjct: 618 CVTSVKYVVRVNGLPCGHIQPTRGLRQGDPLSPYLFLICAEGLSALLHQATIRKAIKGVA 677

Query: 183 -------------------------SEARIVHDILRQYECASDQTVNLDKSIISFSPNTE 217
                                    SEA+ +  IL+ YE +S Q +N +K+ + FSPNT+
Sbjct: 678 ASVRGPRVSHLFFADDSLVFGRATVSEAKEIQRILKAYELSSGQQLNSNKTSLYFSPNTD 737

BLAST of Lag0027961 vs. ExPASy Swiss-Prot
Match: P92555 (Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 GN=AtMg01250 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.8e-06
Identity = 25/44 (56.82%), Postives = 30/44 (68.18%), Query Frame = 0

Query: 78  FNVNGVRCGDVVPSRGLRQGDLLSPYVFLLCAKGLSYMLREDSE 122
           F +NG   G V PSRGLRQGD LSPY+F+LC + LS + R   E
Sbjct: 12  FIINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQE 55

BLAST of Lag0027961 vs. ExPASy TrEMBL
Match: A0A803NL40 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 5.4e-39
Identity = 103/303 (33.99%), Postives = 146/303 (48.18%), Query Frame = 0

Query: 2   MIVLIPKKKCPRRVSEYWLISLCNVTYKLVSKVLVNRMKGMLNQLISQHQSVFILGRCVV 61
           +I LIPK + P R+SEY  ISLC+V YKLVSK +VNR K      ISQ+QS F+LGR + 
Sbjct: 272 LITLIPKVEQPTRISEYRPISLCSVLYKLVSKAIVNRFKTAPPAAISQNQSAFLLGRLIT 331

Query: 62  DNAI-----------------------------------------------------LVI 121
           DN +                                                     LV+
Sbjct: 332 DNVVLAFELVHYLKNKKQGRLGYATLKLDMIKAFDRVEWIFLEKVMSKMGFDAKWVDLVM 391

Query: 122 LCISSVRFSFNVNGVRCGDVVPSRGLRQGDLLSPYVFLLCAKGLSYMLREDSE------- 181
           LC+SS   SFN+NGV  G V P RGL QGD +SPY+FL+C++GLS +LR+  E       
Sbjct: 392 LCVSSSTLSFNINGVVHGLVTPQRGLYQGDAVSPYLFLICSEGLSALLRKQEELGNLKGL 451

Query: 182 ----------------------------ARIVHDILRQYECASDQTVNLDKSIISFSPNT 217
                                        + ++ +L  Y  AS Q +N +K+++SFSPNT
Sbjct: 452 SISRSAPSVSHLLFADDSLLYCQATEASCQAINRVLDVYHRASGQLLNTEKTVMSFSPNT 511

BLAST of Lag0027961 vs. ExPASy TrEMBL
Match: A0A803P3J1 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 2.1e-38
Identity = 106/302 (35.10%), Postives = 150/302 (49.67%), Query Frame = 0

Query: 3    IVLIPKKKCPRRVSEYWLISLCNVTYKLVSKVLVNRMKGMLNQLISQHQSVFILGRCVVD 62
            +VLIPKKK P  + +   I+LCNV YK+++KV+ NRMK  ++Q++S+ QS FI GR + D
Sbjct: 846  VVLIPKKKVPESMVDLRPIALCNVLYKIITKVMANRMKPYMDQIVSESQSAFIPGRLITD 905

Query: 63   NAI-----------------------------------------------------LVIL 122
            N +                                                     LV+ 
Sbjct: 906  NILVSFEVLHYLKRKRKGKDGYMALKLDLSKAYDRIEWNFLDSVLRKIGFSDRWISLVMK 965

Query: 123  CISSVRFSFNVNGVRCGDVVPSRGLRQGDLLSPYVFLLCAKGLSYMLR------------ 182
            C+SS  +     G   G ++PSRG+RQGD LSPY+F+LCA+GLS +++            
Sbjct: 966  CVSSASYKVIHGGRTLGPIIPSRGIRQGDPLSPYIFILCAEGLSALIKRYEARGLIHGCK 1025

Query: 183  --------------EDS---------EARIVHDILRQYECASDQTVNLDKSIISFSPNTE 217
                          +DS         EA  + ++L Q+ECAS Q VNL KS I +S NTE
Sbjct: 1026 VANGAPKVSHMLFADDSYLYCKATLLEANRIRELLHQFECASGQKVNLGKSSIFYSTNTE 1085

BLAST of Lag0027961 vs. ExPASy TrEMBL
Match: A0A803QFF3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 3.5e-38
Identity = 102/305 (33.44%), Postives = 144/305 (47.21%), Query Frame = 0

Query: 2   MIVLIPKKKCPRRVSEYWLISLCNVTYKLVSKVLVNRMKGMLNQLISQHQSVFILGRCVV 61
           +I LIPK K P+ + +Y  ISLCNV YKL+SKVLV R K +L  +IS++QS F+L R + 
Sbjct: 386 VITLIPKIKSPKAMGDYRPISLCNVIYKLISKVLVMRFKDVLPSVISENQSAFLLNRLIT 445

Query: 62  DNAI-----------------------------------------------------LVI 121
           DN +                                                     L++
Sbjct: 446 DNILVAFELVHHLKHKKQGSKGYSALKLDMSKAFDRVEWDYLSAIMAKMGFANHWISLIM 505

Query: 122 LCISSVRFSFNVNGVRCGDVVPSRGLRQGDLLSPYVFLLCAKGLSYMLREDSE------- 181
            C+SS  FSF +NG   G+V P+RGLRQGD LSPY+FL+C++GLS +L  + E       
Sbjct: 506 RCLSSNSFSFQLNGEIVGNVWPTRGLRQGDPLSPYLFLICSEGLSRLLSHEEEMGNLLGL 565

Query: 182 ----------------------------ARIVHDILRQYECASDQTVNLDKSIISFSPNT 219
                                       A  + ++L  Y  AS Q +N  KSI+SFSPNT
Sbjct: 566 KLTRNAPSVSHLLFADDSLLFCQANNNSALAIKEVLDVYHRASGQLLNTQKSIMSFSPNT 625

BLAST of Lag0027961 vs. ExPASy TrEMBL
Match: A0A2N9F7A6 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14689 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 7.8e-38
Identity = 104/302 (34.44%), Postives = 151/302 (50.00%), Query Frame = 0

Query: 3    IVLIPKKKCPRRVSEYWLISLCNVTYKLVSKVLVNRMKGMLNQLISQHQSVFILGRCVVD 62
            I L+PK   P +++++  I+LCNV YK++SKVL NR+K  L Q++S+ QS F+ GR + D
Sbjct: 1103 IALVPKITSPEKITDFRPIALCNVIYKIISKVLANRLKKFLPQIVSESQSAFVPGRLITD 1162

Query: 63   NAI-----------------------------------------------------LVIL 122
            N +                                                     L+++
Sbjct: 1163 NVLVAFEVMHSMSLKRNGRKGQMALKLDMSKAYDRVEWSFLEAIMRRLGFAEKWIHLMMM 1222

Query: 123  CISSVRFSFNVNGVRCGDVVPSRGLRQGDLLSPYVFLLCAKGLSYMLRE-DSEARI---- 182
            CI SV +S  +NG +CG    SRG+RQGD LSPY+FLLCA+GLS++LR+ ++E +I    
Sbjct: 1223 CIKSVSYSVLINGEQCGFFTASRGIRQGDSLSPYLFLLCAEGLSFLLRKAEAEGKITGVA 1282

Query: 183  ------------------------------VHDILRQYECASDQTVNLDKSIISFSPNTE 217
                                          V +IL+QYE AS Q +N  K+ I F+ NT 
Sbjct: 1283 ASRSGPKLTHLFFADDSLLFCQANMSHCETVVNILQQYEDASGQQLNKAKTSIFFTKNTV 1342

BLAST of Lag0027961 vs. ExPASy TrEMBL
Match: A0A2N9GQ35 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS29226 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 7.8e-38
Identity = 103/302 (34.11%), Postives = 152/302 (50.33%), Query Frame = 0

Query: 3   IVLIPKKKCPRRVSEYWLISLCNVTYKLVSKVLVNRMKGMLNQLISQHQSVFILGRCVVD 62
           I L+PK   P +++++  I+LCNV YK++SKVL NR+K +L Q++S+ QS F+ GR + D
Sbjct: 339 IALVPKITSPEKITDFRPIALCNVIYKIISKVLANRLKKILPQIVSESQSAFVPGRLITD 398

Query: 63  NAI-----------------------------------------------------LVIL 122
           N +                                                     L+++
Sbjct: 399 NVLVAFEVMHSMSLKRNGRKGQMALKLDMSKAYDRVEWSFLEAIMRRLGFAEEWIHLIMM 458

Query: 123 CISSVRFSFNVNGVRCGDVVPSRGLRQGDLLSPYVFLLCAKGLSYMLRE-DSEARI---- 182
           CI SV +S  +NG +CG    SRG+RQGD LSPY+FLLCA+GLS++LR+ ++E +I    
Sbjct: 459 CIKSVSYSVLINGEQCGFFTASRGIRQGDSLSPYLFLLCAEGLSFLLRKAEAEGKITGVA 518

Query: 183 ------------------------------VHDILRQYECASDQTVNLDKSIISFSPNTE 217
                                         V +IL+QYE AS Q +N  K+ I F+ NT 
Sbjct: 519 ASRSGPKLTHLFFADDSLLFCQANMSHCETVVNILQQYEEASGQQLNKAKTSIFFTKNTA 578

BLAST of Lag0027961 vs. TAIR 10
Match: ATMG01250.1 (RNA-directed DNA polymerase (reverse transcriptase) )

HSP 1 Score: 52.8 bits (125), Expect = 4.1e-07
Identity = 25/44 (56.82%), Postives = 30/44 (68.18%), Query Frame = 0

Query: 78  FNVNGVRCGDVVPSRGLRQGDLLSPYVFLLCAKGLSYMLREDSE 122
           F +NG   G V PSRGLRQGD LSPY+F+LC + LS + R   E
Sbjct: 12  FIINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQE 55

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_030924930.15.0e-3938.75uncharacterized protein LOC115951962 [Quercus lobata][more]
XP_030945935.18.6e-3939.26uncharacterized protein LOC115970438 [Quercus lobata][more]
XP_010673168.14.3e-3837.32PREDICTED: uncharacterized protein LOC104889608 [Beta vulgaris subsp. vulgaris][more]
XP_030508852.11.2e-3734.00uncharacterized protein LOC115723496 [Cannabis sativa][more]
XP_030963678.11.0e-3633.44uncharacterized protein LOC115984820 [Quercus lobata][more]
Match NameE-valueIdentityDescription
P925555.8e-0656.82Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
A0A803NL405.4e-3933.99Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803P3J12.1e-3835.10Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803QFF33.5e-3833.44Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A2N9F7A67.8e-3834.44Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14689 PE=4 SV=1[more]
A0A2N9GQ357.8e-3834.11Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
Match NameE-valueIdentityDescription
ATMG01250.14.1e-0756.82RNA-directed DNA polymerase (reverse transcriptase) [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR19446:SF440SUBFAMILY NOT NAMEDcoord: 68..201
NoneNo IPR availablePANTHERPTHR19446REVERSE TRANSCRIPTASEScoord: 68..201
NoneNo IPR availablePANTHERPTHR19446REVERSE TRANSCRIPTASEScoord: 2..67
NoneNo IPR availablePANTHERPTHR19446:SF440SUBFAMILY NOT NAMEDcoord: 2..67

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0027961.1Lag0027961.1mRNA