Lag0027890 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAATTATTTGGAATCCGGAAGCCAAAGGGAATTTCACCGTTAGAAGTGCCTACAATCTCGCCGTTAACATCAGTGACAACTGACAAGGACAAAGCATCCCCTTCGAATTGTGGCCAAGCAGAAGCCCCTTGGAAATCTCTTTGGAGCTTGAACATTTTCCCCAGAGCCAAAATATCTATGTTGAAGATTATAAACAATGCTATTCCCACAAATTCAAATATTGCTATAAGAGGGATTTCTACTAATTTGGGATGTTTTCTGTGCGGGGGAGCGTGGAGTCAACCAAACACTTATTCTGGGGGTGTAAGTTTTCTACCAATTTTTTCTCCCGAATTTATGGAATTTGTTTCCTTGTATCAGATGAGGTTGGAGATCTATGGACTACTGGAATTGTATGTGCTGAAATCTGTCGAAGGAGGAGCTGAGCAAAGCGACTATCATCTTATGGGTGCTATGGAATTCAAGAAACAATTGCAGAAATTCAAACCAACAGCTAGACATTAATCAGGTTTCCAGATTGTTGACAAATTATATTGAGGAACTTGAAGATAAGAACAGACCATACTTGGATTTTCCAGAGGTACAGAGCCAGCCGAGTCTCCTGTCATGGAAGCCACCGGATGAAGGCTGGTGGAAGCTCAACTCAGACGCCTCGTGGAGCAGCGCTGCGATGAGGGGCGGGGTGGGCTGGGTGATTCGTGACTCTGCCGGATCTTTAATCGGAGCAGGTTGCAGTCGTGTTTCTCGCTATTGGCCAATAAAGGCCCTTGAAGGTGAAGCGATCTGTTTAGGTCTGAATGCATAATTCAAAGGAACGAGAGAAAGTGGATTCAGACCGCCCCTGCTTGCTGAGTCTGACGCCCTTAGTGTAGTCAAAGTGCTCCCGGAAGAGGAAGAAGACTATTCGGATTCAGGCCTGATTTTCGCCGAAATTTTGGAGATGGCTAAGGAAAAGAAGATCGAATTCGTTTATTGTAAGAGGAATGCTAATTTTTTGGCCCATTATCTTGCTCATGCTGCAACTGTTTTTGGGGATTTCTCTGAATTTTTTTGGCTCTTCTTCCCCTGTTTTAGAAGATAGAGAGGTGGGTAGGGATGAGAGTATCCCTCATTGGTTTGCTTCTTGAATTCTTGTGGACGTTGGTAGTTGTTTGATTTAATGATATTCCTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCCTAGAAAATATTTGTTCTTGCTATATTGCTTAATAGATATCAAAGTATTAATTTCATTTTTTTTTCAGTGGTTGTCAAACTGTTTTTATCATTTATTTGATTCACCTTTTAATGATTTCTCTTTTTTAAAAAATATTTAGAACTAAGAGCAAAATATCCAAGAAGTAAACTCAATAAGTAAAGTCAATAAGTATATAATAATTGGATAAAGGAAACATGTTCAAGTCCCTGATTTGCTTCTCTGTTCGGTTGAATTGCATGGTTTGATTGATTCTTTTACGCTGATTCTGATTTTGACATTTATTGGTGGAGCTATCACCGCTGGATTGGATCATGCCGTTTCATTTCAGTTCTTGAGGCTTTATATTGATGGGGTGGGTTTGATTTTTGCATCCAACTGTTTGTGGATTCCATCTCCTTTAAACAAAATTCTGTAGAAGCTTTTTTCAGATCGTTGGAAGAGAATGGCTTTCGAAGAAATGCTAGAAAATTGGGAAAAGTTTAATCTGACTGCTGAGGAAGAGTCTACGGAAGTAGATGTTGATCGTCGAGCAGTTGTAGTTACAAGTCAGTCTCTCGGTTTCAATCTTATTGGAAAGCTTTTGGCGCCGAGGTATAATATCTAGGGAGGTTATGCGGAAAAGTTTGAAGGCAGCGTGGAACATTCCCATCGCCCTTACTGTCGAAAAATTAAACAAGGACCATGGCTTTTCGACAAGAAGTTCTTGCTGGTTCTTTCCAAGCCAATCCCGATGGTGAAACCGACTGCAATCGAGTTGATGCGGGTTTTTTTTCGGAGGGGAGACAAATTTTCAAGCTTAGTGCGCTTTTCTTGCTTCGAAGGAGAGAAAAATTTCAGCACGTTGCTTCAAACCTAGGAAATTGATGAAGAAAAATGAGTAGAGGGGGCAAGGTTGCTTTGAAGAAATCGAAAGGGAATCGAAAAGGAGTGTGTTTCAACGTACACAACAATTTTTCAATGTGTTTTCATTTTAATTTAACTAGATCTTGCTCAGTCTCACTTACTCACAGCCGAGTTCCCTTGAAATGGTAGAAATTGGGATAAAAGCTTCGTGTGTTCGCTCTGACCCACATAGATCCAACGTGACCCACGAGCCGAGCGACGCTTAAATGACTTCTACACGTTGTTGTTGAGCTTGTCAGAAGAAGATCGGGACTGAGGGAGAAACATATGGGATTAGAGAGAGACATATTAAATCGTGAGGGAGAGAGGATCTCACCGAGAGGGGAGGGAGAGAGACGCACGACGACAACTGGGCAGACGGAGGCGCGATGGTGGCTGGCTGTTCGATCGACAACTGGGATTAGAGAGAGACATATTAAATCGTGAGGGAGAGAGGATCTCACCGAGAGGGGAGGGAGAGAGACGCACGACGACAACTGGGCAGACGTAGGCGCGATGGTGGCTGGCTGTTCGATCGATGACGGTGCGCTTAGGTAGAGGAGAAAGATGTTGAAGAAGGGGGAGACGACTGTTCGTGATCGAGAAGGAGGAAGAGGGTGTTACAGGGGTGTTCACACTTCTTGCGGTGTGTGTGGGTGGTTGAGGTGCAGCGGTGGTTGGACACGATCTCCAGCGACATGGTGGTGGTGCTGTGGCTGATCTGGGAGAAGACGAGAGGGAGATCAAGAGGAAGGGAGAGAGGCACGCGAGGGAAAATAGTCTGAGGGTTTTTGGTAACGTTGGGCGCTTATTTGTTTTTATTTTTTTCAATTCCCGCTTTTTCCCCTGTTTTTCCATAGCTTTTTATATAAAAAGCTATCCTAAGATGCTATTAAAAGGTATTTTTGTTGTAGTGAAGGCATTTGACAGTTGTAGGTACCCCTCAACAAAATGGGGTTGCTGAAGTAAATATGATAGTTGTGTTTATTTTAAGAAAATTTCAGAATCTGACTTTGTGTACCTTTTATTATATGTTGATGATATGCTGATCGCTTGTAAGCATGTTCATGAGTTAAATAAGTTAAAGGGACTTCTTAGTAAAGAATTTGAAATGAAAGATTTAGGGCAAGCAAAACGAACTCTAGGCATAGATTAAGAGAGATAAAAAACAAAGAAAATTGCTTTTGACTCAAAATGACTATATAAATAGGCTAGTTAAAAGATTAGAGATATGATAGTAAGAAGGTTAGTACACCTTTTGGCAAACACTTTAAATTATGTAGGAAAAAATACACTTTTAGTCCCTGAGGTTTGAGTTAGGTTTTATTTTGGTCCCTGAGGTTTCAAATTCAACAATTTAGTCCATGAGGTTTGAGATAAGTAGCAATTTGGTCCCTGCCATCCATTTTTCCGTTAAATCTAACCGGATGCTGACGTGGCACTATTATTTTAATTAAAAAAATAAATTTTTAGTTTTCTAAATTAAAAATATATTAAAATAATAAAAATATTATTATTTTTAATTTATTTAATTTATTTATATTTTTCTCTCCCACCTTTTTCTTCATCCTCCTCCTTCTTTCTTCTTCCTCATCCTCATCCATGGTCGGCGACCGACAGCCGGAGACCACCGCTCGCCGGCGGCGACAATTTTTTTTTTTCCTGTTTTTTCTTTCTTTCTCCTCTCCTCTTCTCATCATCATCATCATCTTCTTCTTTTTTTAATAGCAGAGAAAAAGAGGCGGGGGAGGGAGGAGGAGCTCACTCCTCCCCGTTTCGACGCCGGAACGAGGAGGAGGGAGCTTTAG ATGAAATTATTTGGAATCCGGAAGCCAAAGGGAATTTCACCGTTAGAAGTGCCTACAATCTCGCCGTTAACATCAGTGACAACTGACAAGGACAAAGCATCCCCTTCGAATTGTGGCCAAGCAGAAGCCCCTTGGAAATCTCTTTGGAGCTTGAACATTTTCCCCAGAGCCAAAATATCTATGTTGAAGATTATAAACAATGCTATTCCCACAAATTCAAATATTGCTATAAGAGGGATTTCTACTAATTTGGGATGTTTTCTGTGCGGGGGAGCGTGGAGTCAACCAAACACTTATTCTGGGGGTGAGGAGCTGAGCAAAGCGACTATCATCTTATGGGTGCTATGGAATTCAAGAAACAATTGCAGAAATTCAAACCAACAGCTAGACATTAATCAGGTTTCCAGATTGTTGACAAATTATATTGAGGAACTTGAAGATAAGAACAGACCATACTTGGATTTTCCAGAGGTACAGAGCCAGCCGAGTCTCCTGTCATGGAAGCCACCGGATGAAGGCTGGTGGAAGCTCAACTCAGACGCCTCGTGGAGCAGCGCTGCGATGAGGGGCGGGGTGGGCTGGGTGATTCGTGACTCTGCCGGATCTTTAATCGGAGCAGGTTGCAGTCGTGTTTCTCGCTATTGGCCAATAAAGGCCCTTGAAGTCAAAGTGCTCCCGGAAGAGGAAGAAGACTATTCGGATTCAGGCCTGATTTTCGCCGAAATTTTGGAGATGGCTAAGGAAAAGAAGATCGAATTCGTTTATTCTATCACCGCTGGATTGGATCATGCCGTTTCATTTCAGTTCTTGAGGCTTTATATTGATGGGAAGCTTTTTTCAGATCGTTGGAAGAGAATGGCTTTCGAAGAAATGCTAGAAAATTGGGAAAAGTTTAATCTGACTGCTGAGGAAGAGTCTACGGAAGTAGATGTTGATCGTCGAGCAGTTGTAGTTACAAGTCAGTCTCTCGGTTTCAATCTTATTGGAAAGCTTTTGGCGCCGAGGACCATGGCTTTTCGACAAGAAGTTCTTGCTGGTTCTTTCCAAGCCAATCCCGATGGTGAAACCGACTGCAATCGAGTTGATGCGGCGGTGGTTGGACACGATCTCCAGCGACATGGTGGTGGTGCTGTGGCTGATCTGGGAGAAGACGAGAGGGAGATCAAGAGGAAGGGAGAGAGGCACGCGAGGGAAAATAGTCTGAGGGTTTTTGAGAAAAAGAGGCGGGGGAGGGAGGAGGAGCTCACTCCTCCCCGTTTCGACGCCGGAACGAGGAGGAGGGAGCTTTAG ATGAAATTATTTGGAATCCGGAAGCCAAAGGGAATTTCACCGTTAGAAGTGCCTACAATCTCGCCGTTAACATCAGTGACAACTGACAAGGACAAAGCATCCCCTTCGAATTGTGGCCAAGCAGAAGCCCCTTGGAAATCTCTTTGGAGCTTGAACATTTTCCCCAGAGCCAAAATATCTATGTTGAAGATTATAAACAATGCTATTCCCACAAATTCAAATATTGCTATAAGAGGGATTTCTACTAATTTGGGATGTTTTCTGTGCGGGGGAGCGTGGAGTCAACCAAACACTTATTCTGGGGGTGAGGAGCTGAGCAAAGCGACTATCATCTTATGGGTGCTATGGAATTCAAGAAACAATTGCAGAAATTCAAACCAACAGCTAGACATTAATCAGGTTTCCAGATTGTTGACAAATTATATTGAGGAACTTGAAGATAAGAACAGACCATACTTGGATTTTCCAGAGGTACAGAGCCAGCCGAGTCTCCTGTCATGGAAGCCACCGGATGAAGGCTGGTGGAAGCTCAACTCAGACGCCTCGTGGAGCAGCGCTGCGATGAGGGGCGGGGTGGGCTGGGTGATTCGTGACTCTGCCGGATCTTTAATCGGAGCAGGTTGCAGTCGTGTTTCTCGCTATTGGCCAATAAAGGCCCTTGAAGTCAAAGTGCTCCCGGAAGAGGAAGAAGACTATTCGGATTCAGGCCTGATTTTCGCCGAAATTTTGGAGATGGCTAAGGAAAAGAAGATCGAATTCGTTTATTCTATCACCGCTGGATTGGATCATGCCGTTTCATTTCAGTTCTTGAGGCTTTATATTGATGGGAAGCTTTTTTCAGATCGTTGGAAGAGAATGGCTTTCGAAGAAATGCTAGAAAATTGGGAAAAGTTTAATCTGACTGCTGAGGAAGAGTCTACGGAAGTAGATGTTGATCGTCGAGCAGTTGTAGTTACAAGTCAGTCTCTCGGTTTCAATCTTATTGGAAAGCTTTTGGCGCCGAGGACCATGGCTTTTCGACAAGAAGTTCTTGCTGGTTCTTTCCAAGCCAATCCCGATGGTGAAACCGACTGCAATCGAGTTGATGCGGCGGTGGTTGGACACGATCTCCAGCGACATGGTGGTGGTGCTGTGGCTGATCTGGGAGAAGACGAGAGGGAGATCAAGAGGAAGGGAGAGAGGCACGCGAGGGAAAATAGTCTGAGGGTTTTTGAGAAAAAGAGGCGGGGGAGGGAGGAGGAGCTCACTCCTCCCCGTTTCGACGCCGGAACGAGGAGGAGGGAGCTTTAG MKLFGIRKPKGISPLEVPTISPLTSVTTDKDKASPSNCGQAEAPWKSLWSLNIFPRAKISMLKIINNAIPTNSNIAIRGISTNLGCFLCGGAWSQPNTYSGGEELSKATIILWVLWNSRNNCRNSNQQLDINQVSRLLTNYIEELEDKNRPYLDFPEVQSQPSLLSWKPPDEGWWKLNSDASWSSAAMRGGVGWVIRDSAGSLIGAGCSRVSRYWPIKALEVKVLPEEEEDYSDSGLIFAEILEMAKEKKIEFVYSITAGLDHAVSFQFLRLYIDGKLFSDRWKRMAFEEMLENWEKFNLTAEEESTEVDVDRRAVVVTSQSLGFNLIGKLLAPRTMAFRQEVLAGSFQANPDGETDCNRVDAAVVGHDLQRHGGGAVADLGEDEREIKRKGERHARENSLRVFEKKRRGREEELTPPRFDAGTRRREL Homology
BLAST of Lag0027890 vs. NCBI nr
Match: XP_018436177.1 (PREDICTED: uncharacterized protein LOC108808549 [Raphanus sativus]) HSP 1 Score: 83.6 bits (205), Expect = 4.6e-12 Identity = 56/214 (26.17%), Postives = 92/214 (42.99%), Query Frame = 0
BLAST of Lag0027890 vs. NCBI nr
Match: XP_030924745.1 (uncharacterized protein LOC115951731 [Quercus lobata]) HSP 1 Score: 82.0 bits (201), Expect = 1.3e-11 Identity = 67/221 (30.32%), Postives = 97/221 (43.89%), Query Frame = 0
BLAST of Lag0027890 vs. NCBI nr
Match: XP_023880772.1 (uncharacterized protein LOC111993138 [Quercus suber]) HSP 1 Score: 82.0 bits (201), Expect = 1.3e-11 Identity = 58/219 (26.48%), Postives = 94/219 (42.92%), Query Frame = 0
BLAST of Lag0027890 vs. NCBI nr
Match: OMO85295.1 (reverse transcriptase [Corchorus capsularis]) HSP 1 Score: 78.6 bits (192), Expect = 1.5e-10 Identity = 59/212 (27.83%), Postives = 84/212 (39.62%), Query Frame = 0
BLAST of Lag0027890 vs. NCBI nr
Match: CAB4279811.1 (unnamed protein product [Prunus armeniaca]) HSP 1 Score: 78.2 bits (191), Expect = 1.9e-10 Identity = 60/211 (28.44%), Postives = 90/211 (42.65%), Query Frame = 0
BLAST of Lag0027890 vs. ExPASy TrEMBL
Match: A0A6J0JKM2 (uncharacterized protein LOC108808549 OS=Raphanus sativus OX=3726 GN=LOC108808549 PE=4 SV=1) HSP 1 Score: 83.6 bits (205), Expect = 2.2e-12 Identity = 56/214 (26.17%), Postives = 92/214 (42.99%), Query Frame = 0
BLAST of Lag0027890 vs. ExPASy TrEMBL
Match: A0A803PA46 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 80.5 bits (197), Expect = 1.9e-11 Identity = 57/210 (27.14%), Postives = 93/210 (44.29%), Query Frame = 0
BLAST of Lag0027890 vs. ExPASy TrEMBL
Match: A0A2N9H1N4 (RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS33433 PE=4 SV=1) HSP 1 Score: 79.0 bits (193), Expect = 5.5e-11 Identity = 56/233 (24.03%), Postives = 105/233 (45.06%), Query Frame = 0
BLAST of Lag0027890 vs. ExPASy TrEMBL
Match: A0A1R3IRS5 (Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_10289 PE=4 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 7.2e-11 Identity = 59/212 (27.83%), Postives = 84/212 (39.62%), Query Frame = 0
BLAST of Lag0027890 vs. ExPASy TrEMBL
Match: A0A6J5UV01 (Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS32434 PE=4 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 9.4e-11 Identity = 60/211 (28.44%), Postives = 90/211 (42.65%), Query Frame = 0
BLAST of Lag0027890 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein ) HSP 1 Score: 63.9 bits (154), Expect = 3.5e-10 Identity = 48/226 (21.24%), Postives = 91/226 (40.27%), Query Frame = 0
BLAST of Lag0027890 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein ) HSP 1 Score: 58.5 bits (140), Expect = 1.5e-08 Identity = 34/117 (29.06%), Postives = 55/117 (47.01%), Query Frame = 0
BLAST of Lag0027890 vs. TAIR 10
Match: AT4G09775.1 (BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT2G02650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 45.1 bits (105), Expect = 1.7e-04 Identity = 33/122 (27.05%), Postives = 55/122 (45.08%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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