Lag0027863 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0027863
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Locationchr8: 6189314 .. 6190734 (-)
RNA-Seq ExpressionLag0027863
SyntenyLag0027863
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCTCTTCTTCTAGTACCTCCTCCACCGGAAATGAAAACTTACCTGAGTTGCCTTCTTCCTCTACAACTGTCACTATCCCTATGTCATCATCCACTTCCACTATCTCCATTCCTCTATCGACACCCGTGAACCCATCTCAGCGGTTAAATGTGAATCCATCCCAAAGTCAGAATGTGAATTTCTCCCCAAACTCTAATGTCTCCAATTTTTCTAATCGACCTTTGAACCCTAATCAGCCTTCTTTCTACTCCAACATTCAGCAGCAACCTTTCTCCTCATCCTTTCCCTTTCCTCATACGTCAACACCAACTGGCTTCCAATATCCTCCTCCCTCCTTTTTCGCTTTACCTTTCTTTCCCACTTACAATGTCGAAAACCAATTTTTCCCTCTATTTAGCAACCTTTGCCGCCATATCCAATTCTTACTCCGCCGCTAAACATCAAGCTCTTGAACTTCAACTACTTGCTTTGGAAGAACCAGCTTCTTAATCGTATCATTGCAATTGATATGGAGAGTTTCATTAACGACACTCCTTCACCCCCAAAGTTCTTGGACGCTATTGAAACCCAGGTAAATCCCTTGTTTCCTATATGGCAAAAATATAATTGCACTTTGATGAGCTAGATTTATTTGTCTCTGAATGAAGATAAGTTAGGAGAAATAATTGGTTGCTCTACTGCTATTGATATTTTGGAACACCTTCGAATTGTCTATGAATCTTCTTCCACGACTCGTAGTATGGGTCTTCACTCTTAGCTTCAAAAGATTAAGAAGTATGGTTTATCTGTAACCCAATACCTTGCCAAAATAAAGGATATTACAGATAAATTTTCGGCCATTGGGGAGCCTCTGTCTTATCGGGACCATCTAGGATATATCCTTGAAGGATTAGGAACTGAGTACAATCCATTTGTTACTTCTATTCAAAGCCGAAGTGATCGTCCTTCTCTAGCTAATGTTTGAAGTCTTTTCTTGGCTTACGAGGCTCGTCTTGAAAAACAATGTTTTGTGGATCAACTGAACTTGGTGCAAGCCAACCTTGCCATCATCTCCACTTCTTCTGGTAAAAAACGTTTCAACAAACAATCTCCTAACCAAAAATAAAATACCTTCCCTCGACCCTCATCTCCCTTTCCCTTCCCTCCGAATTTTCCCACCCCTAGTCTTGGAGTTTTAGGTCAACCACAGTCTTCCCCCCGTCCTTCTAAATGGCCTCAATCACAAAATTTCAATCACCCTCAATGTCAGATATGTGGTAAGCTCGACCACACCGCCCTTGTTTGCTATAATCGCCATAACCCTCTATATCATGCTCCCAACACTACATCTCCTTCTTTGCAAGCCTATTTGAACCAACTTCAATCTCTTCCTCGGTCTTCCACTACCACATCTTCTGATAACCTACCTGCACTTTAG

mRNA sequence

ATGGTCTCTTCTTCTAGTACCTCCTCCACCGGAAATGAAAACTTACCTGAGTTGCCTTCTTCCTCTACAACTGTCACTATCCCTATGTCATCATCCACTTCCACTATCTCCATTCCTCTATCGACACCCGTGAACCCATCTCAGCGGTTAAATGTGAATCCATCCCAAAGTCAGAATCAACCTTTGCCGCCATATCCAATTCTTACTCCGCCGCTAAACATCAAGCTCTTGAACTTCAACTACTTGCTTTGGAAGAACCAGCTTCTTAATCGTATCATTGCAATTGATATGGAGAGTTTCATTAACGACACTCCTTCACCCCCAAAGTTCTTGGACGCTATTGAAACCCAGGCTCGTCTTGAAAAACAATGTTTTGTGGATCAACTGAACTTGGTGCAAGCCAACCTTGCCATCATCTCCACTTCTTCTGGTCAACCACAGTCTTCCCCCCGTCCTTCTAAATGGCCTCAATCACAAAATTTCAATCACCCTCAATGTCAGATATGTGGTAAGCTCGACCACACCGCCCTTGTTTGCTATAATCGCCATAACCCTCTATATCATGCTCCCAACACTACATCTCCTTCTTTGCAAGCCTATTTGAACCAACTTCAATCTCTTCCTCGGTCTTCCACTACCACATCTTCTGATAACCTACCTGCACTTTAG

Coding sequence (CDS)

ATGGTCTCTTCTTCTAGTACCTCCTCCACCGGAAATGAAAACTTACCTGAGTTGCCTTCTTCCTCTACAACTGTCACTATCCCTATGTCATCATCCACTTCCACTATCTCCATTCCTCTATCGACACCCGTGAACCCATCTCAGCGGTTAAATGTGAATCCATCCCAAAGTCAGAATCAACCTTTGCCGCCATATCCAATTCTTACTCCGCCGCTAAACATCAAGCTCTTGAACTTCAACTACTTGCTTTGGAAGAACCAGCTTCTTAATCGTATCATTGCAATTGATATGGAGAGTTTCATTAACGACACTCCTTCACCCCCAAAGTTCTTGGACGCTATTGAAACCCAGGCTCGTCTTGAAAAACAATGTTTTGTGGATCAACTGAACTTGGTGCAAGCCAACCTTGCCATCATCTCCACTTCTTCTGGTCAACCACAGTCTTCCCCCCGTCCTTCTAAATGGCCTCAATCACAAAATTTCAATCACCCTCAATGTCAGATATGTGGTAAGCTCGACCACACCGCCCTTGTTTGCTATAATCGCCATAACCCTCTATATCATGCTCCCAACACTACATCTCCTTCTTTGCAAGCCTATTTGAACCAACTTCAATCTCTTCCTCGGTCTTCCACTACCACATCTTCTGATAACCTACCTGCACTTTAG

Protein sequence

MVSSSSTSSTGNENLPELPSSSTTVTIPMSSSTSTISIPLSTPVNPSQRLNVNPSQSQNQPLPPYPILTPPLNIKLLNFNYLLWKNQLLNRIIAIDMESFINDTPSPPKFLDAIETQARLEKQCFVDQLNLVQANLAIISTSSGQPQSSPRPSKWPQSQNFNHPQCQICGKLDHTALVCYNRHNPLYHAPNTTSPSLQAYLNQLQSLPRSSTTTSSDNLPAL
Homology
BLAST of Lag0027863 vs. NCBI nr
Match: CAN73380.1 (hypothetical protein VITISV_032547 [Vitis vinifera])

HSP 1 Score: 62.8 bits (151), Expect = 4.4e-06
Identity = 58/203 (28.57%), Postives = 74/203 (36.45%), Query Frame = 0

Query: 71  PLNIKLLNFNYLLWKNQLLNRIIAIDMESFINDTP-SPPKFLD----------------- 130
           PL IKL   NYL+WKNQLLN +I   +E  +++T   PPKFLD                 
Sbjct: 211 PLTIKLDRDNYLIWKNQLLNVVIVNGLEGXLDNTRLYPPKFLDLQQLIINPEYSLWXRYN 270

Query: 131 ------------------------------------AIETQARLEKQCFVDQLNLVQANL 190
                                               A  + ARL K C   QL  ++   
Sbjct: 271 RLIMSWFYAFLFENVMTQIMGYNTASEIWLALGQIYASASMARLXKLC--TQLQSLKKKK 330

Query: 191 AIISTSS------------------------GQPQSSPRPSKWP----QSQNFNHPQCQI 192
                S                         GQPQ +P    WP     S N + P+CQI
Sbjct: 331 HFKHPSHFYNSTPHFFIPPTLATNYFHPSILGQPQGNPLVRNWPFKPINSLNGSKPKCQI 390

BLAST of Lag0027863 vs. NCBI nr
Match: XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia])

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-05
Identity = 42/122 (34.43%), Postives = 55/122 (45.08%), Query Frame = 0

Query: 117 QARLEKQCFVDQLNLVQANLAIISTSSGQPQSSPRPS----------------------- 176
           +ARL+KQ  VDQLN+ QANL  +S      +  P+ S                       
Sbjct: 214 EARLDKQNTVDQLNIAQANLVNLSLQHNSKRPPPKFSFPNHYKHSFPNSPISAAQSQSIL 273

Query: 177 -------KWPQSQNFNHPQCQICGKLDHTALVCYNRHNPLYHAPNTTSPSLQAYLNQLQS 209
                  KWP   + +  QCQICGKL H+A VCY+R N  YH     + S QA  + +Q 
Sbjct: 274 GKPQSVHKWPPKPSSSKIQCQICGKLGHSAAVCYHRTNIAYH-----NASPQALYHHVQP 330

BLAST of Lag0027863 vs. NCBI nr
Match: XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia])

HSP 1 Score: 55.5 bits (132), Expect = 7.0e-04
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 0

Query: 64  PYPILTPPLNIKLLNFNYLLWKNQLLNRIIAIDMESFINDT-PSPPKFLDAIETQ 118
           P+P L  PLN+KL + N+LLWKNQLLN +IA  +  +++ T   PP+FLD  + Q
Sbjct: 22  PFPTLPQPLNVKLNDNNFLLWKNQLLNAVIANGLRGYLDGTIMPPPQFLDHHQLQ 76


HSP 2 Score: 60.1 bits (144), Expect = 2.8e-05
Identity = 34/84 (40.48%), Postives = 48/84 (57.14%), Query Frame = 0

Query: 39  PLSTPVNPSQRLNVNPSQSQNQPLPPYPILTPPLNIKLLNFNYLLWKNQLLNRIIAIDME 98
           P S P+  S   N NP      PLP  P +  PL +KL + NY++WK QLLN +IA  +E
Sbjct: 18  PTSNPLPSSSIPNPNPQILNTSPLPNMPSINQPLAVKLDDHNYIIWKEQLLNIVIANGLE 77

Query: 99  SFINDT-PSPPKFLDAIETQARLE 122
            F++ +   PP+FLD  + Q+  E
Sbjct: 78  EFLDGSRVCPPRFLDPQQQQSNPE 101

BLAST of Lag0027863 vs. NCBI nr
Match: RVX04814.1 (hypothetical protein CK203_024917 [Vitis vinifera])

HSP 1 Score: 60.1 bits (144), Expect = 2.8e-05
Identity = 39/83 (46.99%), Postives = 47/83 (56.63%), Query Frame = 0

Query: 43  PVNPSQRLNVNPSQSQNQPLP-------PYPILTPPLNIKLLNFNYLLWKNQLLNRIIAI 102
           P  P+   N   + SQN P P       P P L+ PL+IKL   N LLW NQL+N IIA 
Sbjct: 5   PPTPASNSNTTTNNSQN-PAPQITQMTFPSPSLSQPLSIKLDETNLLLWNNQLINVIIAN 64

Query: 103 DMESFIN-DTPSPPKFLDAIETQ 118
            +E FIN D  +PPK+LDA   Q
Sbjct: 65  GLEDFINPDQSNPPKYLDAARRQ 86

BLAST of Lag0027863 vs. NCBI nr
Match: RVW56403.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 58.9 bits (141), Expect = 6.3e-05
Identity = 42/90 (46.67%), Postives = 53/90 (58.89%), Query Frame = 0

Query: 29  MSSSTSTISIPLSTPVNPSQRLNVNPSQSQNQPLPPYPILTPPLNIKLLNFNYLLWKNQL 88
           MS++TS ++   +  +NP Q +N  P  S N     YP L+ PL IKL   N  LWKNQL
Sbjct: 1   MSNTTSYLT---TLTINP-QNINPTPIFSPNITQANYPSLSQPLTIKLDETNLFLWKNQL 60

Query: 89  LNRIIAIDMESFI-NDTPSPPKFLDAIETQ 118
           LN IIA  +E FI  +TP P KFLD  + Q
Sbjct: 61  LNVIIANGLEDFIEGETPIPAKFLDDAQLQ 86

BLAST of Lag0027863 vs. ExPASy TrEMBL
Match: A5AG90 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_032547 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.1e-06
Identity = 58/203 (28.57%), Postives = 74/203 (36.45%), Query Frame = 0

Query: 71  PLNIKLLNFNYLLWKNQLLNRIIAIDMESFINDTP-SPPKFLD----------------- 130
           PL IKL   NYL+WKNQLLN +I   +E  +++T   PPKFLD                 
Sbjct: 211 PLTIKLDRDNYLIWKNQLLNVVIVNGLEGXLDNTRLYPPKFLDLQQLIINPEYSLWXRYN 270

Query: 131 ------------------------------------AIETQARLEKQCFVDQLNLVQANL 190
                                               A  + ARL K C   QL  ++   
Sbjct: 271 RLIMSWFYAFLFENVMTQIMGYNTASEIWLALGQIYASASMARLXKLC--TQLQSLKKKK 330

Query: 191 AIISTSS------------------------GQPQSSPRPSKWP----QSQNFNHPQCQI 192
                S                         GQPQ +P    WP     S N + P+CQI
Sbjct: 331 HFKHPSHFYNSTPHFFIPPTLATNYFHPSILGQPQGNPLVRNWPFKPINSLNGSKPKCQI 390

BLAST of Lag0027863 vs. ExPASy TrEMBL
Match: A0A6J1DQX7 (uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022315 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.2e-06
Identity = 42/122 (34.43%), Postives = 55/122 (45.08%), Query Frame = 0

Query: 117 QARLEKQCFVDQLNLVQANLAIISTSSGQPQSSPRPS----------------------- 176
           +ARL+KQ  VDQLN+ QANL  +S      +  P+ S                       
Sbjct: 214 EARLDKQNTVDQLNIAQANLVNLSLQHNSKRPPPKFSFPNHYKHSFPNSPISAAQSQSIL 273

Query: 177 -------KWPQSQNFNHPQCQICGKLDHTALVCYNRHNPLYHAPNTTSPSLQAYLNQLQS 209
                  KWP   + +  QCQICGKL H+A VCY+R N  YH     + S QA  + +Q 
Sbjct: 274 GKPQSVHKWPPKPSSSKIQCQICGKLGHSAAVCYHRTNIAYH-----NASPQALYHHVQP 330

BLAST of Lag0027863 vs. ExPASy TrEMBL
Match: A0A6J1DQX7 (uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022315 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.4e-04
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 0

Query: 64  PYPILTPPLNIKLLNFNYLLWKNQLLNRIIAIDMESFINDT-PSPPKFLDAIETQ 118
           P+P L  PLN+KL + N+LLWKNQLLN +IA  +  +++ T   PP+FLD  + Q
Sbjct: 22  PFPTLPQPLNVKLNDNNFLLWKNQLLNAVIANGLRGYLDGTIMPPPQFLDHHQLQ 76


HSP 2 Score: 60.1 bits (144), Expect = 1.4e-05
Identity = 39/83 (46.99%), Postives = 47/83 (56.63%), Query Frame = 0

Query: 43  PVNPSQRLNVNPSQSQNQPLP-------PYPILTPPLNIKLLNFNYLLWKNQLLNRIIAI 102
           P  P+   N   + SQN P P       P P L+ PL+IKL   N LLW NQL+N IIA 
Sbjct: 5   PPTPASNSNTTTNNSQN-PAPQITQMTFPSPSLSQPLSIKLDETNLLLWNNQLINVIIAN 64

Query: 103 DMESFIN-DTPSPPKFLDAIETQ 118
            +E FIN D  +PPK+LDA   Q
Sbjct: 65  GLEDFINPDQSNPPKYLDAARRQ 86

BLAST of Lag0027863 vs. ExPASy TrEMBL
Match: A0A7J0EGI5 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-05
Identity = 34/84 (40.48%), Postives = 48/84 (57.14%), Query Frame = 0

Query: 39  PLSTPVNPSQRLNVNPSQSQNQPLPPYPILTPPLNIKLLNFNYLLWKNQLLNRIIAIDME 98
           P S P+  S   N NP      PLP  P +  PL +KL + NY++WK QLLN +IA  +E
Sbjct: 18  PTSNPLPSSSIPNPNPQILNTSPLPNMPSINQPLAVKLDDHNYIIWKEQLLNIVIANGLE 77

Query: 99  SFINDT-PSPPKFLDAIETQARLE 122
            F++ +   PP+FLD  + Q+  E
Sbjct: 78  EFLDGSRVCPPRFLDPQQQQSNPE 101

BLAST of Lag0027863 vs. ExPASy TrEMBL
Match: A0A438F8X3 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_2675 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.1e-05
Identity = 42/90 (46.67%), Postives = 53/90 (58.89%), Query Frame = 0

Query: 29  MSSSTSTISIPLSTPVNPSQRLNVNPSQSQNQPLPPYPILTPPLNIKLLNFNYLLWKNQL 88
           MS++TS ++   +  +NP Q +N  P  S N     YP L+ PL IKL   N  LWKNQL
Sbjct: 1   MSNTTSYLT---TLTINP-QNINPTPIFSPNITQANYPSLSQPLTIKLDETNLFLWKNQL 60

Query: 89  LNRIIAIDMESFI-NDTPSPPKFLDAIETQ 118
           LN IIA  +E FI  +TP P KFLD  + Q
Sbjct: 61  LNVIIANGLEDFIEGETPIPAKFLDDAQLQ 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CAN73380.14.4e-0628.57hypothetical protein VITISV_032547 [Vitis vinifera][more]
XP_022155181.11.3e-0534.43uncharacterized protein LOC111022315 [Momordica charantia][more]
XP_022155181.17.0e-0449.09uncharacterized protein LOC111022315 [Momordica charantia][more]
RVX04814.12.8e-0546.99hypothetical protein CK203_024917 [Vitis vinifera][more]
RVW56403.16.3e-0546.67Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A5AG902.1e-0628.57Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_032547 PE=4 SV=1[more]
A0A6J1DQX76.2e-0634.43uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1DQX73.4e-0449.09uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A7J0EGI51.4e-0540.48Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1[more]
A0A438F8X33.1e-0546.67Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..64
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..58

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0027863.1Lag0027863.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding