Lag0027860 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0027860
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	CCHC-type domain-containing protein
Location	chr8: 6165885 .. 6166548 (-)
RNA-Seq Expression	Lag0027860
Synteny	Lag0027860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATATGTTCAAGTTTATCGATAAACCTGACAAAGAATGGATCAAGAGAAACGGACCATGGTTATTTGACAAGAATCTACTTGCTCTTGACGATCCTGGAGCCAATGTCTGTTCTTTGGAAACGGGCTTCAAGAAGGTGGAGTTTTGGTTACTGCTTTTCAACCTTCCTCTAAGTTTCAGAAACAAGCATGTAGTAGAGAAAATAGGTAACAAATTAGGAGACTTTGTTGATTTTGACAATGAAAAAAATGAAAGCTTTTGGGGAACTAGTGTACGAATCCGGGTTAGGCTTGACATCACTTAACCCCTTCGACGAGGCTTCATGATAAAGACTTCAGGAGGTAATGGTGAGCGCTGGATTACAATTCGATACGAAAGGATTTTGGATTTTTGTTTTTGTTGCGGAAGAATAGGACATGTGCGCTGAGGAAAAAAACAAGGAAATGATAGCAAGTAACAATTATGAGTTTGGAGCTTGGTTGCGATTTCAAGCCTTTGGGAGACCAACTCAAAAACCTGATGATCAAGCAAATGGAATGAAGAATAATTTCTCCAAATCTTTAGAGACAGAAGTACAAAAAGAAAAGGATCTTGAGGAAAATGTGGCAATGGTTGGAGATGAATACCAGGGAAATATCTCAATGGACATTCTGGATGCTTAG

mRNA sequence

ATGTATATGTTCAAGTTTATCGATAAACCTGACAAAGAATGGATCAAGAGAAACGGACCATGGTTATTTGACAAGAATCTACTTGCTCTTGACGATCCTGGAGCCAATGTCTGTTCTTTGGAAACGGGCTTCAAGAAGGTGGAGTTTTGGTTACTGCTTTTCAACCTTCCTCTAAGTTTCAGAAACAAGCATGTAGTAGAGAAAATAGGTAACAAATTAGGAGACTTTGTTGATTTTGACAATGAAAAAAATGAAAGCTTTTGGGGAACTAGTGTACGAATCCGGGACATGTGCGCTGAGGAAAAAAACAAGGAAATGATAGCAAGTAACAATTATGAGTTTGGAGCTTGGTTGCGATTTCAAGCCTTTGGGAGACCAACTCAAAAACCTGATGATCAAGCAAATGGAATGAAGAATAATTTCTCCAAATCTTTAGAGACAGAAGTACAAAAAGAAAAGGATCTTGAGGAAAATGTGGCAATGGTTGGAGATGAATACCAGGGAAATATCTCAATGGACATTCTGGATGCTTAG

Coding sequence (CDS)

ATGTATATGTTCAAGTTTATCGATAAACCTGACAAAGAATGGATCAAGAGAAACGGACCATGGTTATTTGACAAGAATCTACTTGCTCTTGACGATCCTGGAGCCAATGTCTGTTCTTTGGAAACGGGCTTCAAGAAGGTGGAGTTTTGGTTACTGCTTTTCAACCTTCCTCTAAGTTTCAGAAACAAGCATGTAGTAGAGAAAATAGGTAACAAATTAGGAGACTTTGTTGATTTTGACAATGAAAAAAATGAAAGCTTTTGGGGAACTAGTGTACGAATCCGGGACATGTGCGCTGAGGAAAAAAACAAGGAAATGATAGCAAGTAACAATTATGAGTTTGGAGCTTGGTTGCGATTTCAAGCCTTTGGGAGACCAACTCAAAAACCTGATGATCAAGCAAATGGAATGAAGAATAATTTCTCCAAATCTTTAGAGACAGAAGTACAAAAAGAAAAGGATCTTGAGGAAAATGTGGCAATGGTTGGAGATGAATACCAGGGAAATATCTCAATGGACATTCTGGATGCTTAG

Protein sequence

MYMFKFIDKPDKEWIKRNGPWLFDKNLLALDDPGANVCSLETGFKKVEFWLLLFNLPLSFRNKHVVEKIGNKLGDFVDFDNEKNESFWGTSVRIRDMCAEEKNKEMIASNNYEFGAWLRFQAFGRPTQKPDDQANGMKNNFSKSLETEVQKEKDLEENVAMVGDEYQGNISMDILDA

Homology

[Close]

BLAST of Lag0027860 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 85.5 bits (210), Expect = 5.0e-13
Identity = 41/96 (42.71%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 1   MYMFKFIDKPDKEWIKRNGPWLFDKNLLALDDPGANVCSLETGFKKVEFWLLLFNLPLSF 60
           +++F F  + D   + + GPW FDK L+ L  P ++    E  F +V FW+ LF+LP+S+
Sbjct: 80  LFLFHFCRECDMNRVMKTGPWFFDKALIVLQKPCSSKNISELEFNRVAFWIHLFDLPMSW 139

Query: 61  RNKHVVEKIGNKLGDFVDFD-NEKNESFWGTSVRIR 96
            NK +  ++GN +G+FVD D NEK  S WG S+RIR
Sbjct: 140 LNKTMAIRLGNAIGNFVDVDCNEKGFS-WGASLRIR 174

[Close]

BLAST of Lag0027860 vs. NCBI nr
Match: XP_028122006.1 (uncharacterized protein LOC114319195 [Camellia sinensis])

HSP 1 Score: 81.6 bits (200), Expect = 7.3e-12
Identity = 38/95 (40.00%), Postives = 55/95 (57.89%), Query Frame = 0


Query: 1   MYMFKFIDKPDKEWIKRNGPWLFDKNLLALDDPGANVCSLETGFKKVEFWLLLFNLPLSF 60
           +++F F    DK  +  +GPW FDK+LL L +   NV   +    +V+FW+ + NLPL  
Sbjct: 78  LFVFVFGHVVDKRRVLSDGPWTFDKHLLMLGEMDPNVQPSDIQLTRVQFWVHVCNLPLVL 137

Query: 61  RNKHVVEKIGNKLGDFVDFDNEKNESFWGTSVRIR 96
            NK V E +GN +G F+D D E     WG ++RIR
Sbjct: 138 MNKKVGEIVGNAVGQFIDMDYEDGGIVWGRTMRIR 172

[Close]

BLAST of Lag0027860 vs. NCBI nr
Match: XP_027060738.1 (uncharacterized protein LOC113687293 [Coffea arabica])

HSP 1 Score: 81.6 bits (200), Expect = 7.3e-12
Identity = 38/95 (40.00%), Postives = 53/95 (55.79%), Query Frame = 0


Query: 1   MYMFKFIDKPDKEWIKRNGPWLFDKNLLALDDPGANVCSLETGFKKVEFWLLLFNLPLSF 60
           +++FKF D  DK+ +   GPW FD NLL + D   NV S         FW+ ++NLPLS+
Sbjct: 78  LFLFKFNDMLDKKKVFSGGPWCFDDNLLVISDYIGNVQSTNMKLDTCSFWVRVYNLPLSW 137

Query: 61  RNKHVVEKIGNKLGDFVDFDNEKNESFWGTSVRIR 96
            N    E +GNKLG +  F+   +   WG  +RIR
Sbjct: 138 MNAKTAEYLGNKLGVYEGFEQRGDLFAWGKFLRIR 172

[Close]

BLAST of Lag0027860 vs. NCBI nr
Match: XP_017245464.1 (PREDICTED: uncharacterized protein LOC108217127 [Daucus carota subsp. sativus])

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-11
Identity = 33/95 (34.74%), Postives = 54/95 (56.84%), Query Frame = 0


Query: 1   MYMFKFIDKPDKEWIKRNGPWLFDKNLLALDDPGANVCSLETGFKKVEFWLLLFNLPLSF 60
           +Y+F+F  K D +W+  NGPW FD  +L  +   A     +    +VEFW+ +++LP SF
Sbjct: 79  LYLFQFFHKDDMQWMMNNGPWTFDNAILVTNTIPAGGDPTKVPLNEVEFWVQIYDLPTSF 138

Query: 61  RNKHVVEKIGNKLGDFVDFDNEKNESFWGTSVRIR 96
             + V  ++GN  G FV +D+  N S W   +R++
Sbjct: 139 MTEAVGRQLGNFFGKFVLYDSSNNSSIWREYMRLK 173

[Close]

BLAST of Lag0027860 vs. NCBI nr
Match: XP_028124075.1 (uncharacterized protein LOC114321128 [Camellia sinensis])

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-11
Identity = 38/95 (40.00%), Postives = 54/95 (56.84%), Query Frame = 0


Query: 1   MYMFKFIDKPDKEWIKRNGPWLFDKNLLALDDPGANVCSLETGFKKVEFWLLLFNLPLSF 60
           +++F F    DK  +  NGPW FDK+LL L +   NV   +     V+FW+ + NLPL  
Sbjct: 78  LFVFVFGHVVDKRRVLSNGPWTFDKHLLMLGEMDPNVQPSDIQLTGVQFWVHVCNLPLVL 137

Query: 61  RNKHVVEKIGNKLGDFVDFDNEKNESFWGTSVRIR 96
            NK V + +GN +G F+D D E     WG ++RIR
Sbjct: 138 MNKQVGQIVGNAVGQFIDMDYEDGGIAWGRTMRIR 172

The following BLAST results are available for this feature:

BLAST of Lag0027860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156185.1	5.0e-13	42.71	uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha...	[more]
XP_028122006.1	7.3e-12	40.00	uncharacterized protein LOC114319195 [Camellia sinensis]	[more]
XP_027060738.1	7.3e-12	40.00	uncharacterized protein LOC113687293 [Coffea arabica]	[more]
XP_017245464.1	1.2e-11	34.74	PREDICTED: uncharacterized protein LOC108217127 [Daucus carota subsp. sativus]	[more]
XP_028124075.1	1.2e-11	40.00	uncharacterized protein LOC114321128 [Camellia sinensis]	[more]

BLAST of Lag0027860 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025558	Domain of unknown function DUF4283	PFAM	PF14111	DUF4283	coord: 1..95 e-value: 2.0E-13 score: 50.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0027860.1	Lag0027860.1	mRNA