Lag0027513 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0027513
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Mitochondrial ribosomal protein L37
Location	chr8: 1630792 .. 1631193 (-)
RNA-Seq Expression	Lag0027513
Synteny	Lag0027513

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATGAGCCAAATTAGATTGTTTAGAAGAAGCCTTGTCAATACCAAAGATCTAATACAACTGACATCTGTGCGAACATTTGCTGCTGGAGGCAAATCAAAGAAGGGCTCTAAAGGGGGTGCGGCTGCTGATGCTCCTAAAGCATCAATTCTAAGTAAAGAGGTCAAGTCTACCACTGTAGTTGGTGCCAATATTCTCAAGGAAGGTGCAGATCCAAAAATTATGGCAGACTCAGAGTACCCTGATTGGCTGTGGCATTTGATCGATAAACATCCCGCTCTGAGTGAATTACGAAGGAGGAATGTCGATACCCTTCCCTACGTGGATCTCAAACGCTTCGTTAAATTGGATAACCGAGCAAGGATTAAGGAAAACAACTCCATTAAGGCCAAGAACTGA

mRNA sequence

ATGGCTATGAGCCAAATTAGATTGTTTAGAAGAAGCCTTGTCAATACCAAAGATCTAATACAACTGACATCTGTGCGAACATTTGCTGCTGGAGGCAAATCAAAGAAGGGCTCTAAAGGGGGTGCGGCTGCTGATGCTCCTAAAGCATCAATTCTAAGTAAAGAGGTCAAGTCTACCACTGTAGTTGGTGCCAATATTCTCAAGGAAGGTGCAGATCCAAAAATTATGGCAGACTCAGAGTACCCTGATTGGCTGTGGCATTTGATCGATAAACATCCCGCTCTGAGTGAATTACGAAGGAGGAATGTCGATACCCTTCCCTACGTGGATCTCAAACGCTTCGTTAAATTGGATAACCGAGCAAGGATTAAGGAAAACAACTCCATTAAGGCCAAGAACTGA

Coding sequence (CDS)

ATGGCTATGAGCCAAATTAGATTGTTTAGAAGAAGCCTTGTCAATACCAAAGATCTAATACAACTGACATCTGTGCGAACATTTGCTGCTGGAGGCAAATCAAAGAAGGGCTCTAAAGGGGGTGCGGCTGCTGATGCTCCTAAAGCATCAATTCTAAGTAAAGAGGTCAAGTCTACCACTGTAGTTGGTGCCAATATTCTCAAGGAAGGTGCAGATCCAAAAATTATGGCAGACTCAGAGTACCCTGATTGGCTGTGGCATTTGATCGATAAACATCCCGCTCTGAGTGAATTACGAAGGAGGAATGTCGATACCCTTCCCTACGTGGATCTCAAACGCTTCGTTAAATTGGATAACCGAGCAAGGATTAAGGAAAACAACTCCATTAAGGCCAAGAACTGA

Protein sequence

MAMSQIRLFRRSLVNTKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPDWLWHLIDKHPALSELRRRNVDTLPYVDLKRFVKLDNRARIKENNSIKAKN

Homology

[Close]

BLAST of Lag0027513 vs. NCBI nr
Match: XP_038883607.1 (54S ribosomal protein L37, mitochondrial isoform X2 [Benincasa hispida] >XP_038883608.1 54S ribosomal protein L37, mitochondrial isoform X2 [Benincasa hispida])

HSP 1 Score: 236.5 bits (602), Expect = 1.3e-58
Identity = 121/133 (90.98%), Postives = 127/133 (95.49%), Query Frame = 0


Query: 1   MAMSQIRLFRRSLVNTKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTT 60
           M MSQIRLFRRS+VN+KDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKAS LSKEVKSTT
Sbjct: 1   MVMSQIRLFRRSIVNSKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASTLSKEVKSTT 60

Query: 61  VVGANILKEGADPKIMADSEYPDWLWHLIDKHPALSELRRRNVDTLPYVDLKRFVKLDNR 120
           VVGANILKEGADPKIMADSEYP WLWHL+DKHP LSELRR+NV+TLPYVDLKRFVKLD R
Sbjct: 61  VVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVETLPYVDLKRFVKLDTR 120

Query: 121 ARIKENNSIKAKN 134
           A+IKENNS KAKN
Sbjct: 121 AKIKENNSTKAKN 133

[Close]

BLAST of Lag0027513 vs. NCBI nr
Match: XP_038883606.1 (39S ribosomal protein L54, mitochondrial isoform X1 [Benincasa hispida])

HSP 1 Score: 236.5 bits (602), Expect = 1.3e-58
Identity = 121/133 (90.98%), Postives = 127/133 (95.49%), Query Frame = 0


Query: 1   MAMSQIRLFRRSLVNTKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTT 60
           M MSQIRLFRRS+VN+KDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKAS LSKEVKSTT
Sbjct: 9   MVMSQIRLFRRSIVNSKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASTLSKEVKSTT 68

Query: 61  VVGANILKEGADPKIMADSEYPDWLWHLIDKHPALSELRRRNVDTLPYVDLKRFVKLDNR 120
           VVGANILKEGADPKIMADSEYP WLWHL+DKHP LSELRR+NV+TLPYVDLKRFVKLD R
Sbjct: 69  VVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVETLPYVDLKRFVKLDTR 128

Query: 121 ARIKENNSIKAKN 134
           A+IKENNS KAKN
Sbjct: 129 AKIKENNSTKAKN 141

[Close]

BLAST of Lag0027513 vs. NCBI nr
Match: XP_022989738.1 (54S ribosomal protein L37, mitochondrial-like [Cucurbita maxima] >XP_022989739.1 54S ribosomal protein L37, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 224.2 bits (570), Expect = 6.8e-55
Identity = 118/133 (88.72%), Postives = 124/133 (93.23%), Query Frame = 0


Query: 1   MAMSQIRLFRRSLVNTKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTT 60
           MAMSQIRLFRRSL+NTKDLI+LT+VRTFAAGGK KKGSKGGAA DAPKASILSKEVKSTT
Sbjct: 1   MAMSQIRLFRRSLLNTKDLIKLTNVRTFAAGGK-KKGSKGGAATDAPKASILSKEVKSTT 60

Query: 61  VVGANILKEGADPKIMADSEYPDWLWHLIDKHPALSELRRRNVDTLPYVDLKRFVKLDNR 120
           VVGANILKEGADPK+MADSEYPDWLW LIDK PALSELRR++  TLPY DLKRFVKLD R
Sbjct: 61  VVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDTR 120

Query: 121 ARIKENNSIKAKN 134
           ARIKENNS KAKN
Sbjct: 121 ARIKENNSSKAKN 132

[Close]

BLAST of Lag0027513 vs. NCBI nr
Match: XP_008442187.1 (PREDICTED: 54S ribosomal protein L37, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 221.9 bits (564), Expect = 3.4e-54
Identity = 114/133 (85.71%), Postives = 125/133 (93.98%), Query Frame = 0


Query: 1   MAMSQIRLFRRS-LVNTKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKST 60
           M +SQIR FRR+ +V++KDLIQLTSVR+FAAGGKSKKGSKGGAAADAPKASILSKEVKST
Sbjct: 1   MGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKST 60

Query: 61  TVVGANILKEGADPKIMADSEYPDWLWHLIDKHPALSELRRRNVDTLPYVDLKRFVKLDN 120
           TVVGANILKEGADPKIMADSEYP WLWHL+DKHP LSELRR+N ++LPY DL+RFVKLD 
Sbjct: 61  TVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRRKNAESLPYADLRRFVKLDT 120

Query: 121 RARIKENNSIKAK 133
           RARIKENNSIKAK
Sbjct: 121 RARIKENNSIKAK 133

[Close]

BLAST of Lag0027513 vs. NCBI nr
Match: XP_016899597.1 (PREDICTED: 39S ribosomal protein L54, mitochondrial isoform X1 [Cucumis melo] >KAA0041217.1 39S ribosomal protein L54 [Cucumis melo var. makuwa] >TYK16020.1 39S ribosomal protein L54 [Cucumis melo var. makuwa])

HSP 1 Score: 221.9 bits (564), Expect = 3.4e-54
Identity = 114/133 (85.71%), Postives = 125/133 (93.98%), Query Frame = 0


Query: 1   MAMSQIRLFRRS-LVNTKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKST 60
           M +SQIR FRR+ +V++KDLIQLTSVR+FAAGGKSKKGSKGGAAADAPKASILSKEVKST
Sbjct: 28  MGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKST 87

Query: 61  TVVGANILKEGADPKIMADSEYPDWLWHLIDKHPALSELRRRNVDTLPYVDLKRFVKLDN 120
           TVVGANILKEGADPKIMADSEYP WLWHL+DKHP LSELRR+N ++LPY DL+RFVKLD 
Sbjct: 88  TVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRRKNAESLPYADLRRFVKLDT 147

Query: 121 RARIKENNSIKAK 133
           RARIKENNSIKAK
Sbjct: 148 RARIKENNSIKAK 160

[Close]

BLAST of Lag0027513 vs. ExPASy Swiss-Prot
Match: Q9CPW3 (39S ribosomal protein L54, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl54 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.4e-04
Identity = 26/55 (47.27%), Postives = 34/55 (61.82%), Query Frame = 0


Query: 36 KGSKGGAAADAPK-ASILSKEVKSTT-VVGANILKEGADPKIMADSEYPDWLWHL 89
          KG KGG AA+A K   + +   + TT  +G NI KEG D  + ADSEYP WL+ +
Sbjct: 42 KGGKGGVAAEALKDPEVCTDPTQLTTHAMGVNIYKEGQDVALKADSEYPTWLFQV 96

[Close]

BLAST of Lag0027513 vs. ExPASy Swiss-Prot
Match: P36532 (54S ribosomal protein L37, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MRPL37 PE=1 SV=2)

HSP 1 Score: 44.7 bits (104), Expect = 9.7e-04
Identity = 22/68 (32.35%), Postives = 36/68 (52.94%), Query Frame = 0


Query: 60  TVVGANILKEGADPKIMADSEYPDWLWHLIDKHPALSELRRRNVDTLPYVDLKRFVKLDN 119
           T +  NI K G D   + D EYP+WLW ++D    + E    + +    +  ++ ++  N
Sbjct: 34  TSLNLNIWKSGKDAVALEDKEYPNWLWSVLDSDHVV-EHAAEDPEGQALLKRRKNIRKAN 93

Query: 120 RARIKENN 128
           R RIK+NN
Sbjct: 94  RQRIKQNN 100

The following BLAST results are available for this feature:

BLAST of Lag0027513 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883607.1	1.3e-58	90.98	54S ribosomal protein L37, mitochondrial isoform X2 [Benincasa hispida] >XP_0388...	[more]
XP_038883606.1	1.3e-58	90.98	39S ribosomal protein L54, mitochondrial isoform X1 [Benincasa hispida]	[more]
XP_022989738.1	6.8e-55	88.72	54S ribosomal protein L37, mitochondrial-like [Cucurbita maxima] >XP_022989739.1...	[more]
XP_008442187.1	3.4e-54	85.71	PREDICTED: 54S ribosomal protein L37, mitochondrial isoform X2 [Cucumis melo]	[more]
XP_016899597.1	3.4e-54	85.71	PREDICTED: 39S ribosomal protein L54, mitochondrial isoform X1 [Cucumis melo] >K...	[more]

BLAST of Lag0027513 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CPW3	4.4e-04	47.27	39S ribosomal protein L54, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl54 PE=1...	[more]
P36532	9.7e-04	32.35	54S ribosomal protein L37, mitochondrial OS=Saccharomyces cerevisiae (strain ATC...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013870	Ribosomal protein L37, mitochondrial	PFAM	PF08561	Ribosomal_L37	coord: 52..92 e-value: 3.8E-13 score: 50.0
IPR013870	Ribosomal protein L37, mitochondrial	PANTHER	PTHR28595	39S RIBOSOMAL PROTEIN L54, MITOCHONDRIAL	coord: 1..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0027513.1	Lag0027513.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome