Lag0027498 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTCTCTCTCCACCTTCTTCTCCTTCCTCTTACCCTCAAAACCTCCGCCCCCCAAACCCCATCAGCCGCTCATTGCCTCTCCTTCTCCGGCAGCCCCTCAGAACATTCAATTCCAATCCCTCAAATCCAGAGATGGATCGGTTGCCCTAAACCCCCACGAGGGTTCGAACCATTCCGAGCCCTTGTCGGCCGAATTGGCCTCCGTTATCTGTCCCTCGCTGGCCTTCGCCAACACTATGTTCTTCCGATCGGCGTATAATGTGCAGGTGATCGTGGATGATAACGAGCCGGAGGAGCGGCTTCTGAACAGATTCCGGCGGGAGGTTATGAGGGCCGGCGTGATTCAGGAGTGTAAGAGGCGGAGATTCTTTGAGAATACTCAGGATGTCAGGAAGCGCAAGTCTCGCGAGGCTGCGAAACGCAACCGCCGGAGGTCTGTTTCTGAAATCTCTTGTGGTTTGGTTTCTTTTGGGATTTTTGCTCTTGGTTTCTGAAACTCTCTGATTGTTTGTTTGTTGGGATTTTCATTGATTCTTGGAGCTGTTTGGGATTTGTGTTCTGTTTGAGTGTTGAATTTGATTGCTAAGAAGGTAGTAGGAGTCTTATCCAGCGGTTTGGAGAGATTTATCTATAGTTTGGAGGGGACAAGATTTGAACTTTTGACCTCATGGTCGAGGATACATGCGAATTACCATTGAGCTATGCTCACTTTGACAAGATTTATATAGAGTTACTCCTGACTGGACTAATGTTGTGTATTTTAAAAGTTAAACTATAATAATGTAATAAGTTCAAGCCATGAAGGTGTTACCTATCTAAGATTTAATATCTTACAAGTAAATGTAGTAGGGTCAGACAGTTGTCCTGTAAGAATAATCGAGGTGCACAAACTTGGCCTGGACACTCACGCTGTAGTAATGTAGAAGAAAAGAGAAAATAGGCACATTCCCTTGGACATGTTTTACCTTTACTCTTTCGAGCAACTTAGGATATGGAGTTCGAGTTAAGAGAAAGTAGAGAGGGAAAAAAGCGTATCTAAGGGGACTTGAGAGAAAATGGAGAGAAAAACCCTGTGGATTCACACGTTCACATCTCGAAGGTTGATGGTTCAATTTTCCACCTAATACAATGAGGATGTGGTTTTTCAATTGTTCTTCTACTTGTTGTAATCTTTGGTGTTTGTAGATAGCCAAACTTTTCTTTCTTTTTACTTTGCTTTTTCTGTTTTCGTTCCTATTGTTTATTGTGTTTGTAGATAGAGAATTTCAGATTTTGCAGAACCTTCAAATTCCTAACATCTTTATCTTGAAACCAAATATCACTTTGAAACTTCTACTCAATTTGGAAGATGGCTGTAGAGTGTCTTGTTAGAGATTTTAATGCACAATTAAGTGAATTCTTGAGCCCCCATTGGCTAATTGCAGTCTTCTGTCAAAAGAAAGTGGATGGAATTTATGTGCTAAGTTGTTTGATGAAACTGAGTTATGATTTTGGTTGATGAACAGGCGCCCACAGCCAAGATTTACACCACAGAACAAGCAGGATGTGCCTGCAACTAAGCAGGAAGGTGATGATGACAACTGGGATTTACCTGAAGAAGATGTTCCTTATTAA ATGGCTTCTCTCTCCACCTTCTTCTCCTTCCTCTTACCCTCAAAACCTCCGCCCCCCAAACCCCATCAGCCGCTCATTGCCTCTCCTTCTCCGGCAGCCCCTCAGAACATTCAATTCCAATCCCTCAAATCCAGAGATGGATCGGTTGCCCTAAACCCCCACGAGGGTTCGAACCATTCCGAGCCCTTGTCGGCCGAATTGGCCTCCGTTATCTGTCCCTCGCTGGCCTTCGCCAACACTATGTTCTTCCGATCGGCGTATAATGTGCAGGTGATCGTGGATGATAACGAGCCGGAGGAGCGGCTTCTGAACAGATTCCGGCGGGAGGTTATGAGGGCCGGCGTGATTCAGGAGTGTAAGAGGCGGAGATTCTTTGAGAATACTCAGGATGTCAGGAAGCGCAAGTCTCGCGAGGCTGCGAAACGCAACCGCCGGAGGCGCCCACAGCCAAGATTTACACCACAGAACAAGCAGGATGTGCCTGCAACTAAGCAGGAAGGTGATGATGACAACTGGGATTTACCTGAAGAAGATGTTCCTTATTAA ATGGCTTCTCTCTCCACCTTCTTCTCCTTCCTCTTACCCTCAAAACCTCCGCCCCCCAAACCCCATCAGCCGCTCATTGCCTCTCCTTCTCCGGCAGCCCCTCAGAACATTCAATTCCAATCCCTCAAATCCAGAGATGGATCGGTTGCCCTAAACCCCCACGAGGGTTCGAACCATTCCGAGCCCTTGTCGGCCGAATTGGCCTCCGTTATCTGTCCCTCGCTGGCCTTCGCCAACACTATGTTCTTCCGATCGGCGTATAATGTGCAGGTGATCGTGGATGATAACGAGCCGGAGGAGCGGCTTCTGAACAGATTCCGGCGGGAGGTTATGAGGGCCGGCGTGATTCAGGAGTGTAAGAGGCGGAGATTCTTTGAGAATACTCAGGATGTCAGGAAGCGCAAGTCTCGCGAGGCTGCGAAACGCAACCGCCGGAGGCGCCCACAGCCAAGATTTACACCACAGAACAAGCAGGATGTGCCTGCAACTAAGCAGGAAGGTGATGATGACAACTGGGATTTACCTGAAGAAGATGTTCCTTATTAA MASLSTFFSFLLPSKPPPPKPHQPLIASPSPAAPQNIQFQSLKSRDGSVALNPHEGSNHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDVPATKQEGDDDNWDLPEEDVPY Homology
BLAST of Lag0027498 vs. NCBI nr
Match: XP_008450090.2 (PREDICTED: uncharacterized protein LOC103491780, partial [Cucumis melo]) HSP 1 Score: 308.9 bits (790), Expect = 2.9e-80 Identity = 165/183 (90.16%), Postives = 170/183 (92.90%), Query Frame = 0
BLAST of Lag0027498 vs. NCBI nr
Match: KAA0042889.1 (hypothetical protein E6C27_scaffold44G004060 [Cucumis melo var. makuwa] >TYK05292.1 hypothetical protein E5676_scaffold108G001120 [Cucumis melo var. makuwa]) HSP 1 Score: 308.9 bits (790), Expect = 2.9e-80 Identity = 165/183 (90.16%), Postives = 170/183 (92.90%), Query Frame = 0
BLAST of Lag0027498 vs. NCBI nr
Match: AAL35983.1 (ribosome-like protein, partial [Cucumis sativus] >4V61_AU Chain AU, Ribosomal Protein S21 [Spinacia oleracea]) HSP 1 Score: 305.1 bits (780), Expect = 4.1e-79 Identity = 162/182 (89.01%), Postives = 170/182 (93.41%), Query Frame = 0
BLAST of Lag0027498 vs. NCBI nr
Match: XP_004145671.1 (30S ribosomal protein S21, chloroplastic [Cucumis sativus] >KGN58186.1 hypothetical protein Csa_017561 [Cucumis sativus]) HSP 1 Score: 305.1 bits (780), Expect = 4.1e-79 Identity = 162/182 (89.01%), Postives = 170/182 (93.41%), Query Frame = 0
BLAST of Lag0027498 vs. NCBI nr
Match: KAG6581093.1 (30S ribosomal protein S21, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 303.9 bits (777), Expect = 9.2e-79 Identity = 159/181 (87.85%), Postives = 167/181 (92.27%), Query Frame = 0
BLAST of Lag0027498 vs. ExPASy Swiss-Prot
Match: P82024 (30S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 PE=1 SV=2) HSP 1 Score: 152.9 bits (385), Expect = 3.4e-36 Identity = 94/186 (50.54%), Postives = 118/186 (63.44%), Query Frame = 0
BLAST of Lag0027498 vs. ExPASy Swiss-Prot
Match: P48949 (30S ribosomal protein S21 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rpsU PE=3 SV=1) HSP 1 Score: 47.4 bits (111), Expect = 2.0e-04 Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 0
BLAST of Lag0027498 vs. ExPASy Swiss-Prot
Match: B8GPU0 (30S ribosomal protein S21 OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) OX=396588 GN=rpsU PE=3 SV=1) HSP 1 Score: 46.6 bits (109), Expect = 3.5e-04 Identity = 26/56 (46.43%), Postives = 36/56 (64.29%), Query Frame = 0
BLAST of Lag0027498 vs. ExPASy Swiss-Prot
Match: A1WW12 (30S ribosomal protein S21 OS=Halorhodospira halophila (strain DSM 244 / SL1) OX=349124 GN=rpsU PE=3 SV=1) HSP 1 Score: 45.4 bits (106), Expect = 7.7e-04 Identity = 26/56 (46.43%), Postives = 35/56 (62.50%), Query Frame = 0
BLAST of Lag0027498 vs. ExPASy Swiss-Prot
Match: B4U8H0 (30S ribosomal protein S21 OS=Hydrogenobaculum sp. (strain Y04AAS1) OX=380749 GN=rpsU PE=3 SV=1) HSP 1 Score: 45.4 bits (106), Expect = 7.7e-04 Identity = 24/52 (46.15%), Postives = 33/52 (63.46%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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