Lag0027442 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0027442
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionDYW_deaminase domain-containing protein
Locationchr8: 882810 .. 883245 (+)
RNA-Seq ExpressionLag0027442
SyntenyLag0027442
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTACAGCTGCTGCCAGTTTCTGTGTTGCCTTGTCTCTAGCTGTCTTCTTTTCCTCGTCTCCGGCGGCCGTCGGCGCCGGAGTTCAGCCCTCTTCAATCTCGGCGTCTCCGGCTGTTTCACCTCACAGAACTTCACAAAATATGTCTTCGTTCTTCCCTTCTCCGATTGATGAGGGTTCTTCTCCCATTTCTGCAACTCCTCTAAGTTCAGAGTCGCCGGCGCCGGGCTCCGGCGAGTTCATAGGGAAAAGTGGGTCCAGCTCAGTGAAGCTCAATTACGGTGTCTCAGCTTTTGGTCTGAGCATTTGTACTTTTTTTAGTTTAAGACTGTTTCTTAATGTTTGATTCGTTTACAGTGTTGCTTCAGCTTTTCTTGTACTTGGGATTGAAAATTTCATGTTTGGATTTCTGTGCATTGAGAATTCTCTGTTAG

mRNA sequence

ATGGCTACAGCTGCTGCCAGTTTCTGTGTTGCCTTGTCTCTAGCTGTCTTCTTTTCCTCGTCTCCGGCGGCCGTCGGCGCCGGAGTTCAGCCCTCTTCAATCTCGGCGTCTCCGGCTGTTTCACCTCACAGAACTTCACAAAATATGTCTTCGTTCTTCCCTTCTCCGATTGATGAGGGTTCTTCTCCCATTTCTGCAACTCCTCTAAGTTCAGAGTCGCCGGCGCCGGGCTCCGGCGAGTTCATAGGGAAAAGTGGGTCCAGCTCAGTGAAGCTCAATTACGTGTTGCTTCAGCTTTTCTTGTACTTGGGATTGAAAATTTCATGTTTGGATTTCTGTGCATTGAGAATTCTCTGTTAG

Coding sequence (CDS)

ATGGCTACAGCTGCTGCCAGTTTCTGTGTTGCCTTGTCTCTAGCTGTCTTCTTTTCCTCGTCTCCGGCGGCCGTCGGCGCCGGAGTTCAGCCCTCTTCAATCTCGGCGTCTCCGGCTGTTTCACCTCACAGAACTTCACAAAATATGTCTTCGTTCTTCCCTTCTCCGATTGATGAGGGTTCTTCTCCCATTTCTGCAACTCCTCTAAGTTCAGAGTCGCCGGCGCCGGGCTCCGGCGAGTTCATAGGGAAAAGTGGGTCCAGCTCAGTGAAGCTCAATTACGTGTTGCTTCAGCTTTTCTTGTACTTGGGATTGAAAATTTCATGTTTGGATTTCTGTGCATTGAGAATTCTCTGTTAG

Protein sequence

MATAAASFCVALSLAVFFSSSPAAVGAGVQPSSISASPAVSPHRTSQNMSSFFPSPIDEGSSPISATPLSSESPAPGSGEFIGKSGSSSVKLNYVLLQLFLYLGLKISCLDFCALRILC
Homology
BLAST of Lag0027442 vs. NCBI nr
Match: XP_022934640.1 (uncharacterized protein LOC111441775 [Cucurbita moschata])

HSP 1 Score: 93.2 bits (230), Expect = 1.6e-15
Identity = 66/96 (68.75%), Postives = 74/96 (77.08%), Query Frame = 0

Query: 1  MATAAAS-FCVALSLAVFFSSSPAAVGAGVQPSSISASPAVSPHRTSQNMSSFFPSPIDE 60
          MATAAA+ FCVALSLA FF+ SPAAV      S+ISASP V PHR SQNMSSFFPSP+D 
Sbjct: 1  MATAAAAFFCVALSLAAFFAVSPAAV------SAISASPPVPPHRASQNMSSFFPSPVDG 60

Query: 61 GSSPISATPLSSESPAPGSGEFIGK-SGSSSVKLNY 95
           SSPISA P  + + A  SGEFIGK SGS+SVKLN+
Sbjct: 61 RSSPISAAP--APATALESGEFIGKRSGSNSVKLNH 88

BLAST of Lag0027442 vs. NCBI nr
Match: XP_022983589.1 (uncharacterized protein LOC111482150 [Cucurbita maxima])

HSP 1 Score: 87.8 bits (216), Expect = 6.8e-14
Identity = 61/94 (64.89%), Postives = 69/94 (73.40%), Query Frame = 0

Query: 2  ATAAASFCVALSLAVFFSSSPAAVGAGVQPSSISASPAVSPHRTSQNMSSFFPSPIDEGS 61
          A AA+ FCVALSLA  F+ SP+AV      S+ISASP V PHR SQNMSSFFPSP+D  S
Sbjct: 8  AAAASFFCVALSLATLFALSPSAV------SAISASPPVPPHRASQNMSSFFPSPVDGRS 67

Query: 62 SPISATPLSSESPAPGSGEFIGK-SGSSSVKLNY 95
          SPISA      +PA  SGEFIGK SGS+SVKLN+
Sbjct: 68 SPISA------APALESGEFIGKRSGSNSVKLNH 89

BLAST of Lag0027442 vs. NCBI nr
Match: KAF5479257.1 (hypothetical protein F2P56_000093, partial [Juglans regia])

HSP 1 Score: 66.6 bits (161), Expect = 1.6e-07
Identity = 49/95 (51.58%), Postives = 64/95 (67.37%), Query Frame = 0

Query: 1  MATAAASFCVALSLAVFFSSSPAAVGAGVQPSSISASPAVSPHRTSQNMSSFFPSPIDEG 60
          MAT   +FC ALS+A+ F+ S A   +     +ISASP+V P+ T+ NMSSFFPSP  +G
Sbjct: 7  MAT-ITNFCAALSVAIIFAISNAP--SSTSEPTISASPSVLPYVTAPNMSSFFPSPSAQG 66

Query: 61 SSPISATPLSSE--SPAPGSGEFIGKSGSSSVKLN 94
            P SATP +SE  +P P SGEF+GKS S S +L+
Sbjct: 67 -PPNSATPPNSETLAPVPSSGEFVGKSSSDSTRLD 97

BLAST of Lag0027442 vs. NCBI nr
Match: KAE8021266.1 (hypothetical protein FH972_007173 [Carpinus fangiana])

HSP 1 Score: 66.6 bits (161), Expect = 1.6e-07
Identity = 49/93 (52.69%), Postives = 63/93 (67.74%), Query Frame = 0

Query: 1  MATAAASFCVALSLAVFFSSSPAAVGAGVQPSSISASPAVSPHRTSQNMSSFFPSPIDEG 60
          MAT +  FC ALS+A+FF+       +     +ISASPAV+P+ TS NMSSFFPSP D+ 
Sbjct: 1  MAT-STKFCAALSMAIFFAILHGR--SSTCEPTISASPAVTPYITSPNMSSFFPSPSDQ- 60

Query: 61 SSPISATPLSSE--SPAPGSGEFIGKSGSSSVK 92
            P SA P +SE  +P P SGEF+GKS S+SV+
Sbjct: 61 RPPSSAAPPNSEAFAPVPSSGEFVGKSSSNSVR 89

BLAST of Lag0027442 vs. NCBI nr
Match: XP_042974238.1 (mitochondrial phosphate carrier protein 3, mitochondrial-like [Carya illinoinensis])

HSP 1 Score: 64.3 bits (155), Expect = 8.1e-07
Identity = 48/99 (48.48%), Postives = 65/99 (65.66%), Query Frame = 0

Query: 1  MATAAASFCVALSLAVFFSSSPAAVGAGVQPSSISASPAVSPHRTSQNMSSFFPSPIDEG 60
          MAT   +FC ALS+A+ F+ S A   +     +ISASP+V P+ T+ NMSSFFPSP  +G
Sbjct: 1  MAT-ITNFCAALSVAIIFAISHAT--SSTSEPTISASPSVLPYVTAPNMSSFFPSPSVQG 60

Query: 61 SSPISATPLSSE--SPAPGSGEFIGKSGSSSVKLNYVLL 98
            P S TP +SE  +P P SG+F+GKS S S +L+  +L
Sbjct: 61 -PPSSTTPPNSETLAPVPSSGQFVGKSSSDSTRLDSGIL 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022934640.11.6e-1568.75uncharacterized protein LOC111441775 [Cucurbita moschata][more]
XP_022983589.16.8e-1464.89uncharacterized protein LOC111482150 [Cucurbita maxima][more]
KAF5479257.11.6e-0751.58hypothetical protein F2P56_000093, partial [Juglans regia][more]
KAE8021266.11.6e-0752.69hypothetical protein FH972_007173 [Carpinus fangiana][more]
XP_042974238.18.1e-0748.48mitochondrial phosphate carrier protein 3, mitochondrial-like [Carya illinoinens... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..80
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..74

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0027442.1Lag0027442.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane