Lag0027438 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAGGCTGTTCTTAGCATTGCTGTTCCTCCCCTTCTCCCCTCAACACCTTCCAAGAACATTTCTCACTTTCCCTCTTCTCCCTTGATCTCAATTGGCTCTCTCTCCTCTCGTCGCTCGGCAATCAAAGCAACCGCGACGGTTGCCTACGACACTTCAGTGGTTGATTACAGCTCCGCTATCTCGTACGTCACTTTCTCCCATAGACTTCACTTTTGTACTAAACTTGAATTTGAACCACCCATGTCAATATCTTACTAACAGATAACGACCTAAGTAATGGATAACCAAAAAAAAAAATGTTAAATTATCAATTTGGTTTCTTAACTGGTAGGGTTACATCTTTTTAGTCACTATACTTTAAAAAGTTTCTAATAGATTTTGAAATTTCAATGGTACTTATTTGATCCTTATTTTTCAAGGCTTCTAATAAAATCAAGTTTGATTAATGCACAAATTAACCCTTAGATAATTTTTTCAAAACTCATAAATTTCAACAAAAACTTAGCTCTAATGTCATTTGTCTTTGAAATATTATAAGTTTTCAACCATACCTCTGTTTTATAATTCATTAAATGCATATAAAAAATATTTTTTGTAATGATCTTTTTAACGATAACATATGAGAGAGTTTAAAATTGCAATATTTTGTCAAGTTTAAAGTTAAGATTGCAATGTTTATCTAAGTTTGAGTTGCAATTTGATGAAATTGAAAGTTTAGGTAAAAACCGATAGTAACCTAAGTAAAAATTATTATTTTTTCCTTAAAAATATTGGACTAAATTAATACAACCCTTAAGAATAAGATCATATTAAGAAAAATGTTAATGTAACTCTGCTTGTGTTGGTTTGGTTTGGTATTAGGGTGTTTCCTGCAGAAGCATGTGATACCATCGGTGGAGAAGCGTGTTGGGCTAATATTTTTCCAGAAGTAAGGCTTCAGCCTCCTGCTGATCACAATCAAACGGCCGTAGCTTCTTTGGAGGAGGTTGATAGAGAGTATCTCGATTACGCGGATTCGAGGACGTGAGAAACACATCCCTCTTACGACATGTTTGAAAGTGATTTTGAAATCGATAAAACCACTTCTAAACATGTTCTTATTTTCCTTTTCTTTAATTTGCTTCAATCTAACCCTTTTATTGGATATTAGTTATTAGTCTCCGAACTATTGGTTATTTGGTTCTTGAACTTTGAAAACTGTTAAATAGGTTCTCAAACTTTCGATTTTGTGTCTAATAAGTTCTTGAACTTTAAAATGTATCAATAAGCTCTTAAACTTTTAATTTTGTGTCTGGTCCTTGATTTTCAATTTTATATCTAATAGGTCATTGACCTATTCAGCATTTTTTAAAATTCATAAATCTATTAGAATCAATATTGAAAATTTAGGGTCCTATATGGTAGAAAATTCAATTTTATATAAGATTGGTTAATTTTTAAAATCTTGAATATATCATATTAAAGATCTATTAGTTACAAATTGAAGGTTAAGGATCTATTAGACATTTTTTAAGTTAAAAAATCAAATAAACACAAATTTAGAAGTTGAGAGATTATATCTGTAATTTAATCTTATCAATATTATTAATTGACACAAAAGATAAATTTTTTTAGTAATATTTTCAAATTCTGACTTGATTAGATATAAAGTGACATGACTTTTTTACTAGTCAAATCATGTTTTTTCTTCTTCAAACCACATAATCATTTATGTACGAAAACTTTTATTAATTCAATATATAAAATCTTACTGACTTGACAAGAATGTACAAATATTTCAAAATAATTTCCCATCTATTGAATATTATAATTTTATCTTAAACAAAAACATTGTACTTTTATTAATATAATTATTCAGTTTCCTAAATTTATCATGTAATGATGAACTAAATTGCTGCAAATTTGAATATTCAAATTCTTTTTTTTTTCTGAAAATGCTGCATGTTTACACATACACAGAACACTTGAAACTCTGTGCATTGCCTTGGAGTTTGTAGTAATTACCACAAATTACTGAAACTGTCATTATTTTTTATTTTTTTATTATCATTTTTTGTGCAGCGTTTTCCCAGGAGAGGCTTGCGATGATCTTGGTGGAGAATTCTGTGAAGCCGAGTTTCTAAATGGCGTTTTCTAA ATGCAGGCTGTTCTTAGCATTGCTGTTCCTCCCCTTCTCCCCTCAACACCTTCCAAGAACATTTCTCACTTTCCCTCTTCTCCCTTGATCTCAATTGGCTCTCTCTCCTCTCGTCGCTCGGCAATCAAAGCAACCGCGACGGTTGCCTACGACACTTCAGTGGTTGATTACAGCTCCGCTATCTCGGTGTTTCCTGCAGAAGCATGTGATACCATCGGTGGAGAAGCGTGTTGGGCTAATATTTTTCCAGAAGTAAGGCTTCAGCCTCCTGCTGATCACAATCAAACGGCCGTAGCTTCTTTGGAGGAGGTTGATAGAGAGTATCTCGATTACGCGGATTCGAGGACCGTTTTCCCAGGAGAGGCTTGCGATGATCTTGGTGGAGAATTCTGTGAAGCCGAGTTTCTAAATGGCGTTTTCTAA ATGCAGGCTGTTCTTAGCATTGCTGTTCCTCCCCTTCTCCCCTCAACACCTTCCAAGAACATTTCTCACTTTCCCTCTTCTCCCTTGATCTCAATTGGCTCTCTCTCCTCTCGTCGCTCGGCAATCAAAGCAACCGCGACGGTTGCCTACGACACTTCAGTGGTTGATTACAGCTCCGCTATCTCGGTGTTTCCTGCAGAAGCATGTGATACCATCGGTGGAGAAGCGTGTTGGGCTAATATTTTTCCAGAAGTAAGGCTTCAGCCTCCTGCTGATCACAATCAAACGGCCGTAGCTTCTTTGGAGGAGGTTGATAGAGAGTATCTCGATTACGCGGATTCGAGGACCGTTTTCCCAGGAGAGGCTTGCGATGATCTTGGTGGAGAATTCTGTGAAGCCGAGTTTCTAAATGGCGTTTTCTAA MQAVLSIAVPPLLPSTPSKNISHFPSSPLISIGSLSSRRSAIKATATVAYDTSVVDYSSAISVFPAEACDTIGGEACWANIFPEVRLQPPADHNQTAVASLEEVDREYLDYADSRTVFPGEACDDLGGEFCEAEFLNGVF Homology
BLAST of Lag0027438 vs. NCBI nr
Match: XP_023531712.1 (light-regulated protein, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 211.8 bits (538), Expect = 3.7e-51 Identity = 115/143 (80.42%), Postives = 121/143 (84.62%), Query Frame = 0
BLAST of Lag0027438 vs. NCBI nr
Match: XP_022928578.1 (light-regulated protein-like [Cucurbita moschata]) HSP 1 Score: 209.1 bits (531), Expect = 2.4e-50 Identity = 110/142 (77.46%), Postives = 117/142 (82.39%), Query Frame = 0
BLAST of Lag0027438 vs. NCBI nr
Match: XP_038893926.1 (light-regulated protein, chloroplastic-like [Benincasa hispida]) HSP 1 Score: 206.8 bits (525), Expect = 1.2e-49 Identity = 111/141 (78.72%), Postives = 120/141 (85.11%), Query Frame = 0
BLAST of Lag0027438 vs. NCBI nr
Match: XP_004145699.2 (light-regulated protein, chloroplastic [Cucumis sativus]) HSP 1 Score: 202.6 bits (514), Expect = 2.2e-48 Identity = 110/143 (76.92%), Postives = 120/143 (83.92%), Query Frame = 0
BLAST of Lag0027438 vs. NCBI nr
Match: KAE8650797.1 (hypothetical protein Csa_017474 [Cucumis sativus]) HSP 1 Score: 201.1 bits (510), Expect = 6.5e-48 Identity = 109/142 (76.76%), Postives = 119/142 (83.80%), Query Frame = 0
BLAST of Lag0027438 vs. ExPASy Swiss-Prot
Match: Q03200 (Light-regulated protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=LIR1 PE=1 SV=1) HSP 1 Score: 103.2 bits (256), Expect = 2.4e-21 Identity = 56/99 (56.57%), Postives = 68/99 (68.69%), Query Frame = 0
BLAST of Lag0027438 vs. ExPASy Swiss-Prot
Match: Q96500 (Light-regulated protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIR1 PE=1 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 4.7e-17 Identity = 61/141 (43.26%), Postives = 81/141 (57.45%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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