Lag0027438 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0027438
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionlight-regulated protein-like
Locationchr8: 840934 .. 843073 (+)
RNA-Seq ExpressionLag0027438
SyntenyLag0027438
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGCTGTTCTTAGCATTGCTGTTCCTCCCCTTCTCCCCTCAACACCTTCCAAGAACATTTCTCACTTTCCCTCTTCTCCCTTGATCTCAATTGGCTCTCTCTCCTCTCGTCGCTCGGCAATCAAAGCAACCGCGACGGTTGCCTACGACACTTCAGTGGTTGATTACAGCTCCGCTATCTCGTACGTCACTTTCTCCCATAGACTTCACTTTTGTACTAAACTTGAATTTGAACCACCCATGTCAATATCTTACTAACAGATAACGACCTAAGTAATGGATAACCAAAAAAAAAAATGTTAAATTATCAATTTGGTTTCTTAACTGGTAGGGTTACATCTTTTTAGTCACTATACTTTAAAAAGTTTCTAATAGATTTTGAAATTTCAATGGTACTTATTTGATCCTTATTTTTCAAGGCTTCTAATAAAATCAAGTTTGATTAATGCACAAATTAACCCTTAGATAATTTTTTCAAAACTCATAAATTTCAACAAAAACTTAGCTCTAATGTCATTTGTCTTTGAAATATTATAAGTTTTCAACCATACCTCTGTTTTATAATTCATTAAATGCATATAAAAAATATTTTTTGTAATGATCTTTTTAACGATAACATATGAGAGAGTTTAAAATTGCAATATTTTGTCAAGTTTAAAGTTAAGATTGCAATGTTTATCTAAGTTTGAGTTGCAATTTGATGAAATTGAAAGTTTAGGTAAAAACCGATAGTAACCTAAGTAAAAATTATTATTTTTTCCTTAAAAATATTGGACTAAATTAATACAACCCTTAAGAATAAGATCATATTAAGAAAAATGTTAATGTAACTCTGCTTGTGTTGGTTTGGTTTGGTATTAGGGTGTTTCCTGCAGAAGCATGTGATACCATCGGTGGAGAAGCGTGTTGGGCTAATATTTTTCCAGAAGTAAGGCTTCAGCCTCCTGCTGATCACAATCAAACGGCCGTAGCTTCTTTGGAGGAGGTTGATAGAGAGTATCTCGATTACGCGGATTCGAGGACGTGAGAAACACATCCCTCTTACGACATGTTTGAAAGTGATTTTGAAATCGATAAAACCACTTCTAAACATGTTCTTATTTTCCTTTTCTTTAATTTGCTTCAATCTAACCCTTTTATTGGATATTAGTTATTAGTCTCCGAACTATTGGTTATTTGGTTCTTGAACTTTGAAAACTGTTAAATAGGTTCTCAAACTTTCGATTTTGTGTCTAATAAGTTCTTGAACTTTAAAATGTATCAATAAGCTCTTAAACTTTTAATTTTGTGTCTGGTCCTTGATTTTCAATTTTATATCTAATAGGTCATTGACCTATTCAGCATTTTTTAAAATTCATAAATCTATTAGAATCAATATTGAAAATTTAGGGTCCTATATGGTAGAAAATTCAATTTTATATAAGATTGGTTAATTTTTAAAATCTTGAATATATCATATTAAAGATCTATTAGTTACAAATTGAAGGTTAAGGATCTATTAGACATTTTTTAAGTTAAAAAATCAAATAAACACAAATTTAGAAGTTGAGAGATTATATCTGTAATTTAATCTTATCAATATTATTAATTGACACAAAAGATAAATTTTTTTAGTAATATTTTCAAATTCTGACTTGATTAGATATAAAGTGACATGACTTTTTTACTAGTCAAATCATGTTTTTTCTTCTTCAAACCACATAATCATTTATGTACGAAAACTTTTATTAATTCAATATATAAAATCTTACTGACTTGACAAGAATGTACAAATATTTCAAAATAATTTCCCATCTATTGAATATTATAATTTTATCTTAAACAAAAACATTGTACTTTTATTAATATAATTATTCAGTTTCCTAAATTTATCATGTAATGATGAACTAAATTGCTGCAAATTTGAATATTCAAATTCTTTTTTTTTTCTGAAAATGCTGCATGTTTACACATACACAGAACACTTGAAACTCTGTGCATTGCCTTGGAGTTTGTAGTAATTACCACAAATTACTGAAACTGTCATTATTTTTTATTTTTTTATTATCATTTTTTGTGCAGCGTTTTCCCAGGAGAGGCTTGCGATGATCTTGGTGGAGAATTCTGTGAAGCCGAGTTTCTAAATGGCGTTTTCTAA

mRNA sequence

ATGCAGGCTGTTCTTAGCATTGCTGTTCCTCCCCTTCTCCCCTCAACACCTTCCAAGAACATTTCTCACTTTCCCTCTTCTCCCTTGATCTCAATTGGCTCTCTCTCCTCTCGTCGCTCGGCAATCAAAGCAACCGCGACGGTTGCCTACGACACTTCAGTGGTTGATTACAGCTCCGCTATCTCGGTGTTTCCTGCAGAAGCATGTGATACCATCGGTGGAGAAGCGTGTTGGGCTAATATTTTTCCAGAAGTAAGGCTTCAGCCTCCTGCTGATCACAATCAAACGGCCGTAGCTTCTTTGGAGGAGGTTGATAGAGAGTATCTCGATTACGCGGATTCGAGGACCGTTTTCCCAGGAGAGGCTTGCGATGATCTTGGTGGAGAATTCTGTGAAGCCGAGTTTCTAAATGGCGTTTTCTAA

Coding sequence (CDS)

ATGCAGGCTGTTCTTAGCATTGCTGTTCCTCCCCTTCTCCCCTCAACACCTTCCAAGAACATTTCTCACTTTCCCTCTTCTCCCTTGATCTCAATTGGCTCTCTCTCCTCTCGTCGCTCGGCAATCAAAGCAACCGCGACGGTTGCCTACGACACTTCAGTGGTTGATTACAGCTCCGCTATCTCGGTGTTTCCTGCAGAAGCATGTGATACCATCGGTGGAGAAGCGTGTTGGGCTAATATTTTTCCAGAAGTAAGGCTTCAGCCTCCTGCTGATCACAATCAAACGGCCGTAGCTTCTTTGGAGGAGGTTGATAGAGAGTATCTCGATTACGCGGATTCGAGGACCGTTTTCCCAGGAGAGGCTTGCGATGATCTTGGTGGAGAATTCTGTGAAGCCGAGTTTCTAAATGGCGTTTTCTAA

Protein sequence

MQAVLSIAVPPLLPSTPSKNISHFPSSPLISIGSLSSRRSAIKATATVAYDTSVVDYSSAISVFPAEACDTIGGEACWANIFPEVRLQPPADHNQTAVASLEEVDREYLDYADSRTVFPGEACDDLGGEFCEAEFLNGVF
Homology
BLAST of Lag0027438 vs. NCBI nr
Match: XP_023531712.1 (light-regulated protein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211.8 bits (538), Expect = 3.7e-51
Identity = 115/143 (80.42%), Postives = 121/143 (84.62%), Query Frame = 0

Query: 1   MQAVLSIAVPPLLPS-TPSKNISHFPSSPLISIGSL-SSRRSAIKATATVAYDTSVVDYS 60
           MQAVLSI VPPLLPS TPS N+SHFPSSP  SI SL SSRRS IKA   VAYDTSVVDYS
Sbjct: 1   MQAVLSIVVPPLLPSLTPSNNLSHFPSSP--SIRSLSSSRRSTIKAVTAVAYDTSVVDYS 60

Query: 61  SAISVFPAEACDTIGGEACWANIFPEVRLQPPADHNQTAVASLEEVDREYLDY-ADSRTV 120
           S ISVFPAEAC+TIGGEACWANIFPEVRLQ  AD  + A  +LEE+DREYLDY A S+TV
Sbjct: 61  SVISVFPAEACETIGGEACWANIFPEVRLQASADSAEAAAVALEEIDREYLDYAAQSKTV 120

Query: 121 FPGEACDDLGGEFCEAEFLNGVF 141
           FPGEACDDLGGEFC AEFLNGVF
Sbjct: 121 FPGEACDDLGGEFCGAEFLNGVF 141

BLAST of Lag0027438 vs. NCBI nr
Match: XP_022928578.1 (light-regulated protein-like [Cucurbita moschata])

HSP 1 Score: 209.1 bits (531), Expect = 2.4e-50
Identity = 110/142 (77.46%), Postives = 117/142 (82.39%), Query Frame = 0

Query: 1   MQAVLSIAVPPLLPS-TPSKNISHFPSSPLISIGSLSSRRSAIKATATVAYDTSVVDYSS 60
           MQAVLSI VPPLLPS TPS N+SHFPSS        SSRRS IKA   VAYDTSVVDYSS
Sbjct: 1   MQAVLSIVVPPLLPSLTPSNNLSHFPSSSPSIRSHSSSRRSTIKAVTAVAYDTSVVDYSS 60

Query: 61  AISVFPAEACDTIGGEACWANIFPEVRLQPPADHNQTAVASLEEVDREYLDY-ADSRTVF 120
            ISVFPAEAC+TIGGEACWANIFPEVRLQ  AD ++ A  +LEE+DREYLDY A S+TVF
Sbjct: 61  VISVFPAEACETIGGEACWANIFPEVRLQASADSDEAAAVALEEIDREYLDYAAQSKTVF 120

Query: 121 PGEACDDLGGEFCEAEFLNGVF 141
           PGEACDDLGGEFC AEFLNGVF
Sbjct: 121 PGEACDDLGGEFCGAEFLNGVF 142

BLAST of Lag0027438 vs. NCBI nr
Match: XP_038893926.1 (light-regulated protein, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 206.8 bits (525), Expect = 1.2e-49
Identity = 111/141 (78.72%), Postives = 120/141 (85.11%), Query Frame = 0

Query: 1   MQAVLSIAVPPLLPSTPSKNISHFPSS-PLISIGSLSSRRSAIKATATVAYDTSVVDYSS 60
           MQAVLSIAVPPLLPST S N    PS  PLIS  S  SRRSAIKATA+V YD S+VDYSS
Sbjct: 1   MQAVLSIAVPPLLPSTLSNN---NPSQFPLISFSSHCSRRSAIKATASVVYDASIVDYSS 60

Query: 61  AISVFPAEACDTIGGEACWANIFPEVRLQPPADHNQTAVASLEEVDREYLDYADSRTVFP 120
           AISVFPAEAC+TIGGEACWAN+FPEVR+QP  ++ + AVA LEE+DREYLDYADSRTVFP
Sbjct: 61  AISVFPAEACETIGGEACWANMFPEVRIQPSLNNQKPAVA-LEEIDREYLDYADSRTVFP 120

Query: 121 GEACDDLGGEFCEAEFLNGVF 141
           GEACDDLGGEFCE EFLN VF
Sbjct: 121 GEACDDLGGEFCEPEFLNSVF 137

BLAST of Lag0027438 vs. NCBI nr
Match: XP_004145699.2 (light-regulated protein, chloroplastic [Cucumis sativus])

HSP 1 Score: 202.6 bits (514), Expect = 2.2e-48
Identity = 110/143 (76.92%), Postives = 120/143 (83.92%), Query Frame = 0

Query: 1   MQAVLSIAVPPLLPST--PSKNISHFPSSPLISIGSLSSRRSAIKATATVAYDTSVVDYS 60
           MQAVLSIAVP LLPS+   S   SHF   PLI+  S SSRRS+IKATA+V YDTSVVDYS
Sbjct: 18  MQAVLSIAVPSLLPSSTLSSNKPSHF---PLITFSSHSSRRSSIKATASVVYDTSVVDYS 77

Query: 61  SAISVFPAEACDTIGGEAC-WANIFPEVRLQPPADHNQTAVASLEEVDREYLDYADSRTV 120
           SAISVFPAEAC+TIGGEAC W N+FPEVRLQ  + +NQ  VAS EE+DREYLDYADS+TV
Sbjct: 78  SAISVFPAEACETIGGEACGWENMFPEVRLQQASLNNQNPVASSEEIDREYLDYADSKTV 137

Query: 121 FPGEACDDLGGEFCEAEFLNGVF 141
           FPGEACDDLGGEFCE EFLNGVF
Sbjct: 138 FPGEACDDLGGEFCEPEFLNGVF 157

BLAST of Lag0027438 vs. NCBI nr
Match: KAE8650797.1 (hypothetical protein Csa_017474 [Cucumis sativus])

HSP 1 Score: 201.1 bits (510), Expect = 6.5e-48
Identity = 109/142 (76.76%), Postives = 119/142 (83.80%), Query Frame = 0

Query: 2   QAVLSIAVPPLLPST--PSKNISHFPSSPLISIGSLSSRRSAIKATATVAYDTSVVDYSS 61
           QAVLSIAVP LLPS+   S   SHF   PLI+  S SSRRS+IKATA+V YDTSVVDYSS
Sbjct: 279 QAVLSIAVPSLLPSSTLSSNKPSHF---PLITFSSHSSRRSSIKATASVVYDTSVVDYSS 338

Query: 62  AISVFPAEACDTIGGEAC-WANIFPEVRLQPPADHNQTAVASLEEVDREYLDYADSRTVF 121
           AISVFPAEAC+TIGGEAC W N+FPEVRLQ  + +NQ  VAS EE+DREYLDYADS+TVF
Sbjct: 339 AISVFPAEACETIGGEACGWENMFPEVRLQQASLNNQNPVASSEEIDREYLDYADSKTVF 398

Query: 122 PGEACDDLGGEFCEAEFLNGVF 141
           PGEACDDLGGEFCE EFLNGVF
Sbjct: 399 PGEACDDLGGEFCEPEFLNGVF 417

BLAST of Lag0027438 vs. ExPASy Swiss-Prot
Match: Q03200 (Light-regulated protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=LIR1 PE=1 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.4e-21
Identity = 56/99 (56.57%), Postives = 68/99 (68.69%), Query Frame = 0

Query: 38  RRSAIK---ATATVAYDTSVVDYSSAISVFPAEACDTIGGEACWANIFPEVRLQPPADHN 97
           RR A++   A A VA + + VDYSS ISVFP EACD IGGEAC   ++PE +L   A   
Sbjct: 30  RRVALRVRAAAAAVAVEAAEVDYSSNISVFPMEACDLIGGEACNVQMYPEAKLSSSA-AV 89

Query: 98  QTAVASLEEVDREYLDYADSRTVFPGEACDDLGGEFCEA 134
             + A+ EEVDR+YL Y +  TVFP EACDDLGGEFC+A
Sbjct: 90  AVSRAAAEEVDRDYLSYDEPTTVFPEEACDDLGGEFCKA 127

BLAST of Lag0027438 vs. ExPASy Swiss-Prot
Match: Q96500 (Light-regulated protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIR1 PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.7e-17
Identity = 61/141 (43.26%), Postives = 81/141 (57.45%), Query Frame = 0

Query: 1   MQAVLSIAVPPLLP-----STPSKNISHFPSSPLISIGSLSSRRSAIKATATVAYDTSVV 60
           MQ  L I    LLP     S+P        ++    + SL S  S+  +++++  D + V
Sbjct: 1   MQGALFIKPTILLPLPSSVSSPKLTFLLPHATKASRLSSLRSNNSS--SSSSLTSDPNTV 60

Query: 61  DYSSAI-SVFPAEACDTIGGEACWANIFPEVRLQPPADHNQTAVASLEEVDREYLDYADS 120
           DY+S+I SVFPAEAC+ I G AC A+I+PEV+L         A    E VDREY +Y   
Sbjct: 61  DYNSSILSVFPAEACEVISGYACSADIYPEVKLDTKPVSRPVA---SEPVDREYEEYNSP 120

Query: 121 RTVFPGEACDDLGGEFCEAEF 136
           +TVF  EACDDLGGEFCE +F
Sbjct: 121 KTVFREEACDDLGGEFCEPDF 136

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023531712.13.7e-5180.42light-regulated protein, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
XP_022928578.12.4e-5077.46light-regulated protein-like [Cucurbita moschata][more]
XP_038893926.11.2e-4978.72light-regulated protein, chloroplastic-like [Benincasa hispida][more]
XP_004145699.22.2e-4876.92light-regulated protein, chloroplastic [Cucumis sativus][more]
KAE8650797.16.5e-4876.76hypothetical protein Csa_017474 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Q032002.4e-2156.57Light-regulated protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 ... [more]
Q965004.7e-1743.26Light-regulated protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIR1... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009856Light regulated Lir1PFAMPF07207Lir1coord: 1..133
e-value: 3.2E-51
score: 173.1
IPR009856Light regulated Lir1PANTHERPTHR36762LIGHT-REGULATED PROTEIN 1, CHLOROPLASTICcoord: 1..140
NoneNo IPR availablePANTHERPTHR36762:SF3LIGHT-REGULATED PROTEINcoord: 1..140

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0027438.1Lag0027438.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009507 chloroplast