Lag0027404 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0027404
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr8: 295169 .. 295702 (-)
RNA-Seq ExpressionLag0027404
SyntenyLag0027404
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAATCCTATCATCTCCCATTGCCCGATGAGGGTTCGATCTCATGGACGCATCCTATCATGCCGGTTTTGTTTATATAAAAGCAAATAAATCTGAGAATTGTATTCAAATAAAAGTAAATAACCTGGGACGTGTAACTGCATCGGGGCAAAACTTTGTTCAATTTTTCTATTACAAATATGCATTTAGTTCAATGCGTAGAATTTTCTATGAAGAATCTAACCAACATGAAATTGAGAATCATCGGATAAAAACATGTAGTCTGATATTATCTCACTTTGTAGACTTCAACCAATGCTTGGCTACAATTGGATGATGACTTATTTTCTATTCTTGACCTGCTTCTATTCTCCTCGATTCACGCTGTCAATGCGTTCTTGAGGTGTGGAGCAGATGGGTGGTACTATGGCCTGGCGGGCAGAGGTAAGGACCCCGAGTGGCCGACTGGAACCGTGGCGTTGGAGTTGGTCGACCGGCCAGTGTACGACACGAGGAACAAGGGAGAGGTGGTCGATCTAATTTTGGGGTGCTAG

mRNA sequence

ATGCAATCCTATCATCTCCCATTGCCCGATGAGGGTTCGATCTCATGGACGCATCCTATCATGCCGACTTCAACCAATGCTTGGCTACAATTGGATGATGACTTATTTTCTATTCTTGACCTGCTTCTATTCTCCTCGATTCACGCTGTCAATGCGTTCTTGAGGTGTGGAGCAGATGGGTGGTACTATGGCCTGGCGGGCAGAGGTAAGGACCCCGAGTGGCCGACTGGAACCGTGGCGTTGGAGTTGGTCGACCGGCCAGTGTACGACACGAGGAACAAGGGAGAGGTGGTCGATCTAATTTTGGGGTGCTAG

Coding sequence (CDS)

ATGCAATCCTATCATCTCCCATTGCCCGATGAGGGTTCGATCTCATGGACGCATCCTATCATGCCGACTTCAACCAATGCTTGGCTACAATTGGATGATGACTTATTTTCTATTCTTGACCTGCTTCTATTCTCCTCGATTCACGCTGTCAATGCGTTCTTGAGGTGTGGAGCAGATGGGTGGTACTATGGCCTGGCGGGCAGAGGTAAGGACCCCGAGTGGCCGACTGGAACCGTGGCGTTGGAGTTGGTCGACCGGCCAGTGTACGACACGAGGAACAAGGGAGAGGTGGTCGATCTAATTTTGGGGTGCTAG

Protein sequence

MQSYHLPLPDEGSISWTHPIMPTSTNAWLQLDDDLFSILDLLLFSSIHAVNAFLRCGADGWYYGLAGRGKDPEWPTGTVALELVDRPVYDTRNKGEVVDLILGC
Homology
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BLAST of Lag0027404 vs. NCBI nr
Match: KAG6581157.1 (hypothetical protein SDJN03_21159, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107.5 bits (267), Expect = 7.3e-20
Identity = 59/84 (70.24%), Postives = 61/84 (72.62%), Query Frame = 0 

Query: 21  MPTSTNAWLQLDDDLFSILDLLLFSSIHAVNAFL-RCGADGWYYGLAGRGKDPEWPTGTV 80
           MPTSTNA  + D DL SIL+LL FSSI AVNA L RCGA  W   LA RGKD  WPTG V
Sbjct: 1   MPTSTNAAPESDGDLLSILELLQFSSIEAVNALLMRCGAGVWVLRLADRGKDLHWPTGMV 60

Query: 81  ALELVDRPVYDTRNKGEVVDLILG 104
           A ELVDRPV DTR K EVVDL LG
Sbjct: 61  ASELVDRPVKDTRTKVEVVDLNLG 84

The following BLAST results are available for this feature:
BLAST of Lag0027404 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6581157.17.3e-2070.24hypothetical protein SDJN03_21159, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Lag0027404 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0027404.1Lag0027404.1mRNA