Lag0027350 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0027350
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr10: 46870252 .. 46871290 (+)
RNA-Seq Expression	Lag0027350
Synteny	Lag0027350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATGCGCAGAGATTGCTTTCTGGCATTGTTTTTTTGTTACGCAGTTGTTTCGGAGGTAACCAATGCCTCGCTTTGGGACTCAAGAAAGTTGTTAGACCCGGCTTCGAAAGATAACTCCAAGAGAACGTCGCCAGTAATCCTCTACTTTCTTGAAAAAAAAGAAAAAGAATTAAAGAAAGAATCCTATATCTCTGTACTATTTTATGAACTTTCCGTTTTCGCCTTTTAGGTTTCCCCACTCATTAGTCCGGTTACTTCTGTGAATAACTCGGATTCTCTACCCGTTGACGCAAAGAAGAAGCAAATTGAACCACCCCCGCCTGCGCCCAACAACTCATCGTCAAATGTGGATTCGAAAGTACTCAATAATTCGAGTTCCGGTAGTTCGCCTAATGTTAGCGAGACTGGTAACGGTAAGCCTTTTGACACAAAGCAGGAGAACGGGACTGAAGCCAGTCCTCAATCAAGTAATCGAGAAAATTGTGATGGTGTACCCGACAACAAGAAGTGCAAGGACCAGAAGAAGTTGGTTGCTTGTATCCAAAGTAATCTTATTGGTAAACACGAGTTGCTCTTCGGCCTTGTTAGCTATCTAAGCTTGATTTTTACCATGCTTTTCCGTTTTCTTCTGGGGTGGATTCTGATTTCATTTTCTGCTGCGTTAGGATTTTATACCTCTAGAATCCTGCTACCTCCAGAACTGTCGCTTATTAAATTTGTCCCGATAGGCTGTATGGTTGCTTTTGTTTGTTTATATATATCCCTTTTGTTTCTTATCAAAATAATAATAATAATAATAAATTTGTCCCGATAGTTAATTGGTATTTTTGTGTATCTGCTTGATCCGATAATTTTTTTAAAATTATTATTGGAACCGGTCAAGTTCCATCTTCTGCGGCCTAGAAGCCAGTTGAGTATTTCTGGAAGTTGCATGCACTCTCCAAGGTATCACATGGAAACCAAACCTTTATTATGGAATTGAAGTTTGGCATATGATCTCCAATGCGAAGCTTCAAATAGTTAACCTGCAATAG

mRNA sequence

ATGGCGATGCGCAGAGATTGCTTTCTGGCATTGTTTTTTTGTTACGCAGTTGTTTCGGAGGTAACCAATGCCTCGCTTTGGGACTCAAGAAAGTTGTTAGACCCGGCTTCGAAAGATAACTCCAAGAGAACGTCGCCAGTTTCCCCACTCATTAGTCCGGTTACTTCTGTGAATAACTCGGATTCTCTACCCGTTGACGCAAAGAAGAAGCAAATTGAACCACCCCCGCCTGCGCCCAACAACTCATCGTCAAATGTGGATTCGAAAGTACTCAATAATTCGAGTTCCGGTAGTTCGCCTAATGTTAGCGAGACTGGTAACGGTAAGCCTTTTGACACAAAGCAGGAGAACGGGACTGAAGCCAGTCCTCAATCAAGTAATCGAGAAAATTGTGATGGTGTACCCGACAACAAGAAGTGCAAGGACCAGAAGAAGTTGGTTGCTTGTATCCAAAGTAATCTTATTGGTATCACATGGAAACCAAACCTTTATTATGGAATTGAAGTTTGGCATATGATCTCCAATGCGAAGCTTCAAATAGTTAACCTGCAATAG

Coding sequence (CDS)

ATGGCGATGCGCAGAGATTGCTTTCTGGCATTGTTTTTTTGTTACGCAGTTGTTTCGGAGGTAACCAATGCCTCGCTTTGGGACTCAAGAAAGTTGTTAGACCCGGCTTCGAAAGATAACTCCAAGAGAACGTCGCCAGTTTCCCCACTCATTAGTCCGGTTACTTCTGTGAATAACTCGGATTCTCTACCCGTTGACGCAAAGAAGAAGCAAATTGAACCACCCCCGCCTGCGCCCAACAACTCATCGTCAAATGTGGATTCGAAAGTACTCAATAATTCGAGTTCCGGTAGTTCGCCTAATGTTAGCGAGACTGGTAACGGTAAGCCTTTTGACACAAAGCAGGAGAACGGGACTGAAGCCAGTCCTCAATCAAGTAATCGAGAAAATTGTGATGGTGTACCCGACAACAAGAAGTGCAAGGACCAGAAGAAGTTGGTTGCTTGTATCCAAAGTAATCTTATTGGTATCACATGGAAACCAAACCTTTATTATGGAATTGAAGTTTGGCATATGATCTCCAATGCGAAGCTTCAAATAGTTAACCTGCAATAG

Protein sequence

MAMRRDCFLALFFCYAVVSEVTNASLWDSRKLLDPASKDNSKRTSPVSPLISPVTSVNNSDSLPVDAKKKQIEPPPPAPNNSSSNVDSKVLNNSSSGSSPNVSETGNGKPFDTKQENGTEASPQSSNRENCDGVPDNKKCKDQKKLVACIQSNLIGITWKPNLYYGIEVWHMISNAKLQIVNLQ

Homology

[Close]

BLAST of Lag0027350 vs. NCBI nr
Match: XP_023528429.1 (uncharacterized protein LOC111791362 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 237.7 bits (605), Expect = 8.2e-59
Identity = 124/155 (80.00%), Postives = 138/155 (89.03%), Query Frame = 0


Query: 1   MAMRRDCFLALFFCYAVVSEVTNASLWDSRKLLDPASKDNSKRTSPVSPLISPVTSVNNS 60
           MAMRRDCFLALF C+AVVSEVTNASLWDSRKLL+PAS +NS RTS  SP+ISP++SVN S
Sbjct: 1   MAMRRDCFLALFLCHAVVSEVTNASLWDSRKLLEPASNNNSTRTSQGSPVISPISSVNIS 60

Query: 61  DSLPVDAKKKQIEPPPPAPNNSSSNVDSKVLNNSSSGSSPNVSETGNGKPFDTKQENGTE 120
           DS PV  KKKQ+EPPPPAPNNSSS+++S VLNNSSSGSS  VSETG+GKPFDTK+ENGTE
Sbjct: 61  DSAPVIGKKKQVEPPPPAPNNSSSSLESNVLNNSSSGSSSTVSETGSGKPFDTKKENGTE 120

Query: 121 ASPQSSNRENCDGVPDNKKCKDQKKLVACIQSNLI 156
           AS  SS  E CDGVPDNKKC+DQKKL+ACIQSNLI
Sbjct: 121 ASALSSKHETCDGVPDNKKCRDQKKLIACIQSNLI 155

[Close]

BLAST of Lag0027350 vs. NCBI nr
Match: XP_022971211.1 (uncharacterized protein LOC111470002 [Cucurbita maxima])

HSP 1 Score: 235.0 bits (598), Expect = 5.3e-58
Identity = 126/155 (81.29%), Postives = 136/155 (87.74%), Query Frame = 0


Query: 1   MAMRRDCFLALFFCYAVVSEVTNASLWDSRKLLDPASKDNSKRTSPVSPLISPVTSVNNS 60
           MAMR DCFLALFFCYAVVSEVTNASLWDSRKLLDPASKDNS  TSPV PLISP +S+N+S
Sbjct: 1   MAMRGDCFLALFFCYAVVSEVTNASLWDSRKLLDPASKDNSTGTSPVLPLISPNSSMNHS 60

Query: 61  DSLPVDAKKKQIEPPPPAPNNSSSNVDSKVLNNSSSGSSPNVSETGNGKPFDTKQENGTE 120
           DS PVD KK++ EPPPPAPNNSSSN+DSK LNNSSSGSS NVSE GNGKP DT + N TE
Sbjct: 61  DSAPVDGKKRR-EPPPPAPNNSSSNLDSKGLNNSSSGSSHNVSEAGNGKPLDTNKRNRTE 120

Query: 121 ASPQSSNRENCDGVPDNKKCKDQKKLVACIQSNLI 156
              QSSNRE CDGVPDNKKC+DQKKLVACI+SN+I
Sbjct: 121 GGLQSSNREICDGVPDNKKCRDQKKLVACIESNII 154

[Close]

BLAST of Lag0027350 vs. NCBI nr
Match: KAG7027858.1 (hypothetical protein SDJN02_09035 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 233.8 bits (595), Expect = 1.2e-57
Identity = 127/155 (81.94%), Postives = 134/155 (86.45%), Query Frame = 0


Query: 1   MAMRRDCFLALFFCYAVVSEVTNASLWDSRKLLDPASKDNSKRTSPVSPLISPVTSVNNS 60
           MAMR DCFLALFFCYAVVSEVTNASLWDSRKLLDPASKDNS  TSPV PLISP +S N+S
Sbjct: 1   MAMRGDCFLALFFCYAVVSEVTNASLWDSRKLLDPASKDNSTGTSPVLPLISPNSSTNHS 60

Query: 61  DSLPVDAKKKQIEPPPPAPNNSSSNVDSKVLNNSSSGSSPNVSETGNGKPFDTKQENGTE 120
           DS PVD  KKQ EPPPPAPNNSSSN+DSK LNNSSSGSS NVSE GNGKP DT + N TE
Sbjct: 61  DSAPVDG-KKQREPPPPAPNNSSSNLDSKGLNNSSSGSSHNVSEAGNGKPLDTNKGNRTE 120

Query: 121 ASPQSSNRENCDGVPDNKKCKDQKKLVACIQSNLI 156
              QSSNRE CDGVPDNKKC+DQKKLVACIQ+N+I
Sbjct: 121 GGLQSSNREICDGVPDNKKCRDQKKLVACIQNNII 154

[Close]

BLAST of Lag0027350 vs. NCBI nr
Match: XP_023540201.1 (uncharacterized protein LOC111800645 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 231.9 bits (590), Expect = 4.5e-57
Identity = 127/155 (81.94%), Postives = 133/155 (85.81%), Query Frame = 0


Query: 1   MAMRRDCFLALFFCYAVVSEVTNASLWDSRKLLDPASKDNSKRTSPVSPLISPVTSVNNS 60
           MAMR DCFLALFFCYAVVSEVTNASLWDSRKLLDPASKDNS  TSPV PLISP +S N+S
Sbjct: 1   MAMRGDCFLALFFCYAVVSEVTNASLWDSRKLLDPASKDNSTGTSPVLPLISPNSSTNHS 60

Query: 61  DSLPVDAKKKQIEPPPPAPNNSSSNVDSKVLNNSSSGSSPNVSETGNGKPFDTKQENGTE 120
           DS PVD  KKQ E PPPAPNNSSSN+DSK LNNSSSGSS NVSE GNGKP DT + N TE
Sbjct: 61  DSAPVDG-KKQRESPPPAPNNSSSNLDSKGLNNSSSGSSHNVSEAGNGKPLDTNKGNRTE 120

Query: 121 ASPQSSNRENCDGVPDNKKCKDQKKLVACIQSNLI 156
              QSSNRE CDGVPDNKKC+DQKKLVACIQSN+I
Sbjct: 121 GGLQSSNREICDGVPDNKKCRDQKKLVACIQSNII 154

[Close]

BLAST of Lag0027350 vs. NCBI nr
Match: XP_022941631.1 (uncharacterized protein LOC111446930 [Cucurbita moschata])

HSP 1 Score: 231.5 bits (589), Expect = 5.9e-57
Identity = 126/155 (81.29%), Postives = 132/155 (85.16%), Query Frame = 0


Query: 1   MAMRRDCFLALFFCYAVVSEVTNASLWDSRKLLDPASKDNSKRTSPVSPLISPVTSVNNS 60
           MAMR DCFLALFFCYAVVSEVTNASLWDSRKLLDPASKDNS  TSPV PLISP +S N+S
Sbjct: 1   MAMRGDCFLALFFCYAVVSEVTNASLWDSRKLLDPASKDNSTGTSPVLPLISPNSSTNHS 60

Query: 61  DSLPVDAKKKQIEPPPPAPNNSSSNVDSKVLNNSSSGSSPNVSETGNGKPFDTKQENGTE 120
           DS PVD  KKQ EPPPPAPNNSSSN+DSK LNNSSSGSS NVSE GNGKP DT   N TE
Sbjct: 61  DSAPVDG-KKQREPPPPAPNNSSSNLDSKGLNNSSSGSSHNVSEAGNGKPLDTNNGNRTE 120

Query: 121 ASPQSSNRENCDGVPDNKKCKDQKKLVACIQSNLI 156
              QSSN E CDGVPDNKKC+DQKKLVACIQ+N+I
Sbjct: 121 GGLQSSNHEICDGVPDNKKCRDQKKLVACIQNNII 154

The following BLAST results are available for this feature:

BLAST of Lag0027350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023528429.1	8.2e-59	80.00	uncharacterized protein LOC111791362 [Cucurbita pepo subsp. pepo]	[more]
XP_022971211.1	5.3e-58	81.29	uncharacterized protein LOC111470002 [Cucurbita maxima]	[more]
KAG7027858.1	1.2e-57	81.94	hypothetical protein SDJN02_09035 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023540201.1	4.5e-57	81.94	uncharacterized protein LOC111800645 [Cucurbita pepo subsp. pepo]	[more]
XP_022941631.1	5.9e-57	81.29	uncharacterized protein LOC111446930 [Cucurbita moschata]	[more]

BLAST of Lag0027350 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..131
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0027350.1	Lag0027350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane