Lag0027312 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0027312
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr10: 46647085 .. 46648649 (+)
RNA-Seq ExpressionLag0027312
SyntenyLag0027312
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGGCGAAAGTGGAGACATCTATTCACATCTTTTGGGAGTGCAAAATTACCAGAGGACTGTGGGTAATTTTTTTCCCCCGACGGAAGAGTTGCAGATCAATAATGAGGAAGGTTGGCCAGTTTCAGACCACTGTGATCGTTGGTGGAAGGAGAGCAAGTATGAGACGGTGGACGATTACAAATGCAGTACCAATTTGGTCTTAGGATGGCAAATTTGGGCTTATCGGAACGAAATTCTTCACATCAATCATATTCCAGATACTGAGGTTATAATTCAAAGAATTAAAAGGTACCTGTGGGTAATTTTTTTCCCCCCGACGGAAGAGTTGCAGATCAATAATGAGGAAGGTTGGACAATTTCAGACCACTGTGATCGTTGGTGGAAGGAGAGCAAGTATGAGACGGTGGACGATTACAGATGCAGTACCAATTTGGTCTTAGGATGGCAAATTTGGGCTTATCGGAACGAAATTCTTTACATCAATCATATTCCAGATACTGAGGTTATAATTCAAAGAATTAAAAGGTACCTGGTCGAGTTCAAGGTGGATGGTAGGCCTCGCCGGAGCTCTGCATCTTTGGTTCGGTCCCTTTCTTCCTCGCGTGTTGCTGCCTGGTTGATGATCCCGAAAGGAACTTGGAAGCTCAACTCTGATGCTTCTTGGAGCGAAGCAAAAAACCGAGGAGGAATTGGTTGGACTGTTTGACGGTGGGACGGGTCTCTGGTGGCAGCGGGCTACAAAAAGATGGAACGGAGATGGAATATAAGCTGATTAGAGGCATTTGTTGTATGTGAAGGTCTTCGAGCCTTGCCGATCAACTCACCTTCAGTTCGCATTGAAGTGAACATCATTCAGATCGTTAGTCTTCTGCTTCACAAAGAGGAAAACGCTTCTAATTTGAACAAGTTCATTACCGAAGCCCATACCCTAATTTCAAACCGTTCGGGCGTCTCTATTGTCCATATTCCCAGAAATAAAAATATTATGGCCCATAAGCTAGCTCGAGAGGCATGTGATCGCAACAAATCGGGGTGTTGGTTCGATTGTTTTCCTGATTGGTTGATTTCCTTGTGTAGAGAAGATATCTCTGTGTTTTGGCGATACTAGTGGGGGTCCCTGTCCCACTGGTATCTTAAACTCAGTTTCTGTTTTTCCTAATTTTTAAATAATAGTATTTTTCCTAAAAAAAAAAGAATTAAAATTTAAAATTTAAAAGTTATTTGAGGTAGAATAAACTTAATTCACATACAAAAATAAGATTAAAAGCTCTCAAAACTTACACTTCGGTCTATGGACTTTTGGAAAATGACTATTTTGATATTTACCATTATTGTCGTCTACTGCCAACTTCAATTACGCTTAGGTTCGCTTGGTTAGGCTAAAATGGTCACAGGATTTACGAAATAAATGAGATTAAATAGGTTTGGAATGACTTTTAGGGGCTGTTTGGCCCATGGTTTCGGAATCAGAACCCTGGGAATCAGAACCCTGGGGGGTTTGTTCTGGCATGTTTGAAAGCCTGGGAATCAGAAAACAGTGTTTGGGGTGCTGTGTTCTGA

mRNA sequence

ATGCAGGGCGAAAGTGGAGACATCTATTCACATCTTTTGGGAGTGCAAAATTACCAGAGGACTGTGGGTAATTTTTTTCCCCCGACGGAAGAGTTGCAGATCAATAATGAGGAAGGTTGGCCAGTTTCAGACCACTGTGATCGTTGGTGGAAGGAGAGCAAGTATGAGACGGTGGACGATTACAAATGCAGTACCAATTTGGTCTTAGGATGGCAAATTTGGGCTTATCGGAACGAAATTCTTCACATCAATCATATTCCAGATACTGAGGTTATAATTCAAAGAATTAAAAGGTACCTGTGGGTAATTTTTTTCCCCCCGACGGAAGAGTTGCAGATCAATAATGAGGAAGGTTGGACAATTTCAGACCACTGTGATCGTTGGTGGAAGGAGAGCAAGTATGAGACGGTGGACGATTACAGATGCAGTACCAATTTGGTCTTAGGATGGCAAATTTGGGCTTATCGGAACGAAATTCTTTACATCAATCATATTCCAGATACTGAGGTTATAATTCAAAGAATTAAAAGGTACCTGGTCGAGTTCAAGGTGGATGGTAGGCCTCGCCGGAGCTCTGCATCTTTGGTTCGGTCCCTTTCTTCCTCGCGTGTTGCTGCCTGGTTGATGATCCCGAAAGGAACTTGGAAGCTCAACTCTGATGCTTCTTGGAGCGAAGCAAAAAACCGAGGAGGAATTGGTCTTCGAGCCTTGCCGATCAACTCACCTTCAGTTCGCATTGAAGTGAACATCATTCAGATCAGAAGATATCTCTGTGTTTTGGCGATACTAGTGGGGGTCCCTGTCCCACTGGGGCTGTTTGGCCCATGGTTTCGGAATCAGAACCCTGGGAATCAGAACCCTGGGGGGTTTGTTCTGGCATGTTTGAAAGCCTGGGAATCAGAAAACAGTGTTTGGGGTGCTGTGTTCTGA

Coding sequence (CDS)

ATGCAGGGCGAAAGTGGAGACATCTATTCACATCTTTTGGGAGTGCAAAATTACCAGAGGACTGTGGGTAATTTTTTTCCCCCGACGGAAGAGTTGCAGATCAATAATGAGGAAGGTTGGCCAGTTTCAGACCACTGTGATCGTTGGTGGAAGGAGAGCAAGTATGAGACGGTGGACGATTACAAATGCAGTACCAATTTGGTCTTAGGATGGCAAATTTGGGCTTATCGGAACGAAATTCTTCACATCAATCATATTCCAGATACTGAGGTTATAATTCAAAGAATTAAAAGGTACCTGTGGGTAATTTTTTTCCCCCCGACGGAAGAGTTGCAGATCAATAATGAGGAAGGTTGGACAATTTCAGACCACTGTGATCGTTGGTGGAAGGAGAGCAAGTATGAGACGGTGGACGATTACAGATGCAGTACCAATTTGGTCTTAGGATGGCAAATTTGGGCTTATCGGAACGAAATTCTTTACATCAATCATATTCCAGATACTGAGGTTATAATTCAAAGAATTAAAAGGTACCTGGTCGAGTTCAAGGTGGATGGTAGGCCTCGCCGGAGCTCTGCATCTTTGGTTCGGTCCCTTTCTTCCTCGCGTGTTGCTGCCTGGTTGATGATCCCGAAAGGAACTTGGAAGCTCAACTCTGATGCTTCTTGGAGCGAAGCAAAAAACCGAGGAGGAATTGGTCTTCGAGCCTTGCCGATCAACTCACCTTCAGTTCGCATTGAAGTGAACATCATTCAGATCAGAAGATATCTCTGTGTTTTGGCGATACTAGTGGGGGTCCCTGTCCCACTGGGGCTGTTTGGCCCATGGTTTCGGAATCAGAACCCTGGGAATCAGAACCCTGGGGGGTTTGTTCTGGCATGTTTGAAAGCCTGGGAATCAGAAAACAGTGTTTGGGGTGCTGTGTTCTGA

Protein sequence

MQGESGDIYSHLLGVQNYQRTVGNFFPPTEELQINNEEGWPVSDHCDRWWKESKYETVDDYKCSTNLVLGWQIWAYRNEILHINHIPDTEVIIQRIKRYLWVIFFPPTEELQINNEEGWTISDHCDRWWKESKYETVDDYRCSTNLVLGWQIWAYRNEILYINHIPDTEVIIQRIKRYLVEFKVDGRPRRSSASLVRSLSSSRVAAWLMIPKGTWKLNSDASWSEAKNRGGIGLRALPINSPSVRIEVNIIQIRRYLCVLAILVGVPVPLGLFGPWFRNQNPGNQNPGGFVLACLKAWESENSVWGAVF
Homology
[Close]
BLAST of Lag0027312 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 62.8 bits (151), Expect = 6.1e-06
Identity = 37/130 (28.46%), Postives = 61/130 (46.92%), Query Frame = 0 

Query: 145 NLVLGWQIWAYRNEILYINHIPDTEVIIQRIKRYLV-----EFKVDGRPRRSSASLVRSL 204
           ++++ WQIW  RN+ ++    P+T  I   I RY++        + G+       L+R +
Sbjct: 12  SMIIAWQIWEMRNKSIFKGVHPETRDIQLAIDRYIINSAGRNTNLKGKSTNKDLHLIRRI 71

Query: 205 SSSRVAAWLMIPKGTWKLNSDASWSEAKNRGGIGLRALPINSPSVRIEVNIIQIRR---Y 264
             +  A W      +WKLN++A+W    N GGIG          ++    II+  R   Y
Sbjct: 72  EDNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITY 131

Query: 265 LCVLAILVGV 267
           L V+AI  G+
Sbjct: 132 LEVMAICEGL 141

[Close]
BLAST of Lag0027312 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.0e-06
Identity = 37/130 (28.46%), Postives = 61/130 (46.92%), Query Frame = 0 

Query: 145 NLVLGWQIWAYRNEILYINHIPDTEVIIQRIKRYLV-----EFKVDGRPRRSSASLVRSL 204
           ++++ WQIW  RN+ ++    P+T  I   I RY++        + G+       L+R +
Sbjct: 12  SMIIAWQIWEMRNKSIFKGVHPETRDIQLAIDRYIINSAGRNTNLKGKSTNKDLHLIRRI 71

Query: 205 SSSRVAAWLMIPKGTWKLNSDASWSEAKNRGGIGLRALPINSPSVRIEVNIIQIRR---Y 264
             +  A W      +WKLN++A+W    N GGIG          ++    II+  R   Y
Sbjct: 72  EDNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITY 131

Query: 265 LCVLAILVGV 267
           L V+AI  G+
Sbjct: 132 LEVMAICEGL 141

The following BLAST results are available for this feature:
BLAST of Lag0027312 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022143535.16.1e-0628.46uncharacterized protein LOC111013412 [Momordica charantia][more]
BLAST of Lag0027312 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0027312 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CP263.0e-0628.46uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
BLAST of Lag0027312 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0027312.1Lag0027312.1mRNA