Lag0027244 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0027244
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	protein FAR1-RELATED SEQUENCE 4-like
Location	chr10: 46141210 .. 46142222 (+)
RNA-Seq Expression	Lag0027244
Synteny	Lag0027244

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGTTGAAATGGTTTTTTCGTCAATGTTGTGTCGAACCCGGTCCAATCTCGGCCGGACATCTAGAAAATCCCGGTCGAACCACCATTTTTTCTGGCCGGGATTCGTACGCAGAACCCATATATCCAGTAGGTCATGTGTCGGAGTGGAAAACATTCGAAAATTTTGTGGATTTTGAAGTTTTGTGGCCGAAGAGGGTTCCAAGAGTTGGTCGACGACAAACCTTGAGGATACCATCGACGGGAGAGGTTAGACAAGTTCACAAATGTACTCGCTGTGGAGGGAGAGGTCATAACAGGAAAACATGCCGCCAACCACTCAACACCGCATAGTATCGAGTTTTTTTTCTTTATGTAATCTTATATAATGTACCTATCAACGTATCTCATGTTTTTTTAGAATATTAGTTCAATACACAATGCATGTTGTTATTTCCTGCGTGCAGGTTTGTGTGGGAATGTGTCACTGTTTGTCTGGGAATGTGTCAATGTAACCATATCTTTCACTGTTTTTTTCTCAATTCTATCCCGGCCGAACGCCCGGACCGAGACTCCCAACGAGACGAGCTAGCCGCTAACGTGGACCAATAAGATTTCAATATTTTTCCCGGGTCGTTCCCGGTCGGGTAACCCGACCGAGCACGTCGAACGGGTTCGGGACGGGAAAAAAAACAGTGACTACTTCAAGGATCCCGGTCGGATGGCTCGGTCGGGCGTGGCCCGAAAAAAAAACAGTGGCTAACTTCTTCAGTGAGACTCGCTCGAGGATCCCGGTCGGACGGCTCAGCCGGGCGTGTCGCGGGAAAAAATACAGTGGCGTTTCTTCGGTAAACGTTAGCCTCGCTCGAGGATCCCAGTCGGATGACCCGGCCGGGTTTGGCCCGGGAAAAAATACAGTGCCTAGCTCCTTCTCCCTTCGGCCCGTTCAGGTAACTCGGTCTAGTGGCCGACCGGGATGGAGCCGGGAAAAAAACCAGTACAGTAAACTTCGAATTTTGTTTACTTTAATGTGA

mRNA sequence

ATGTTGTTGAAATGGTTTTTTCGTCAATGTTGTGTCGAACCCGGTCCAATCTCGGCCGGACATCTAGAAAATCCCGGTCGAACCACCATTTTTTCTGGCCGGGATTCGTACGCAGAACCCATATATCCAGTAGGTCATGTGTCGGAGTGGAAAACATTCGAAAATTTTGTGGATTTTGAAGTTTTGTGGCCGAAGAGGGTTCCAAGAGTTGGTCGACGACAAACCTTGAGGATACCATCGACGGGAGAGGTTAGACAAGTTCACAAATGTACTCGCTGTGGAGGGAGAGTGACTACTTCAAGGATCCCGGTCGGATGGCTCGGTCGGGCGTGGCCCGAAAAAAAAACAGTGGCTAACTTCTTCAGTGAGACTCGCTCGAGGATCCCGGTCGGACGGCTCAGCCGGGCGTGTCGCGGGAAAAAATACAGTGGCGTTTCTTCGGTAAACGTTAGCCTCGCTCGAGGATCCCAGTCGGATGACCCGGCCGGGTTTGGCCCGGGAAAAAATACAGTGCCTAGCTCCTTCTCCCTTCGGCCCGTTCAGGTAACTCGGTCTAGTGGCCGACCGGGATGGAGCCGGGAAAAAAACCAGTACAGTAAACTTCGAATTTTGTTTACTTTAATGTGA

Coding sequence (CDS)

ATGTTGTTGAAATGGTTTTTTCGTCAATGTTGTGTCGAACCCGGTCCAATCTCGGCCGGACATCTAGAAAATCCCGGTCGAACCACCATTTTTTCTGGCCGGGATTCGTACGCAGAACCCATATATCCAGTAGGTCATGTGTCGGAGTGGAAAACATTCGAAAATTTTGTGGATTTTGAAGTTTTGTGGCCGAAGAGGGTTCCAAGAGTTGGTCGACGACAAACCTTGAGGATACCATCGACGGGAGAGGTTAGACAAGTTCACAAATGTACTCGCTGTGGAGGGAGAGTGACTACTTCAAGGATCCCGGTCGGATGGCTCGGTCGGGCGTGGCCCGAAAAAAAAACAGTGGCTAACTTCTTCAGTGAGACTCGCTCGAGGATCCCGGTCGGACGGCTCAGCCGGGCGTGTCGCGGGAAAAAATACAGTGGCGTTTCTTCGGTAAACGTTAGCCTCGCTCGAGGATCCCAGTCGGATGACCCGGCCGGGTTTGGCCCGGGAAAAAATACAGTGCCTAGCTCCTTCTCCCTTCGGCCCGTTCAGGTAACTCGGTCTAGTGGCCGACCGGGATGGAGCCGGGAAAAAAACCAGTACAGTAAACTTCGAATTTTGTTTACTTTAATGTGA

Protein sequence

MLLKWFFRQCCVEPGPISAGHLENPGRTTIFSGRDSYAEPIYPVGHVSEWKTFENFVDFEVLWPKRVPRVGRRQTLRIPSTGEVRQVHKCTRCGGRVTTSRIPVGWLGRAWPEKKTVANFFSETRSRIPVGRLSRACRGKKYSGVSSVNVSLARGSQSDDPAGFGPGKNTVPSSFSLRPVQVTRSSGRPGWSREKNQYSKLRILFTLM

Homology

[Close]

BLAST of Lag0027244 vs. NCBI nr
Match: XP_022144014.1 (uncharacterized protein LOC111013803 [Momordica charantia])

HSP 1 Score: 89.7 bits (221), Expect = 3.1e-14
Identity = 40/59 (67.80%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 36  SYAEPIYPVGHVSEWKTFENFVDFEVLWPKRVPRVGRRQTLRIPSTGEVRQVHKCTRCG 95
           +YAEPI+PVGHVS W +   FV+  V  PK VPRVGRR+T RIPSTGEVRQ  KC+RCG
Sbjct: 88  AYAEPIFPVGHVSTWNSSPEFVNIPVKPPKTVPRVGRRKTARIPSTGEVRQTRKCSRCG 146

[Close]

BLAST of Lag0027244 vs. NCBI nr
Match: XP_022148136.1 (uncharacterized protein LOC111016889 [Momordica charantia])

HSP 1 Score: 89.0 bits (219), Expect = 5.3e-14
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 36  SYAEPIYPVGHVSEWKTFENFVDFEVLWPKRVPRVGRRQTLRIPSTGEVRQVHKCTRCG 95
           +YAEPI+P+GHVS WK+  +FVD  V  P  VPRVGRR+T+RIPSTGEVR+  KC RCG
Sbjct: 250 AYAEPIFPIGHVSTWKSSPDFVDTPVEAPDMVPRVGRRRTVRIPSTGEVRETRKCGRCG 308

[Close]

BLAST of Lag0027244 vs. NCBI nr
Match: XP_022159268.1 (uncharacterized protein LOC111025678 [Momordica charantia])

HSP 1 Score: 88.6 bits (218), Expect = 7.0e-14
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 36  SYAEPIYPVGHVSEWKTFENFVDFEVLWPKRVPRVGRRQTLRIPSTGEVRQVHKCTRCG 95
           +YAEPI+PVGH+S W +   FV+  V  PK VPRVGRR+T+RIPSTGEVRQ  KC RCG
Sbjct: 439 AYAEPIFPVGHISTWNSSPEFVNIPVEPPKTVPRVGRRKTVRIPSTGEVRQTRKCGRCG 497

[Close]

BLAST of Lag0027244 vs. NCBI nr
Match: XP_022145820.1 (uncharacterized protein LOC111015181 [Momordica charantia])

HSP 1 Score: 88.2 bits (217), Expect = 9.1e-14
Identity = 40/59 (67.80%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 36  SYAEPIYPVGHVSEWKTFENFVDFEVLWPKRVPRVGRRQTLRIPSTGEVRQVHKCTRCG 95
           +YAEPI+PVGHVS W +   FV+  V  PK VPRVGRR+T RIPSTGEVRQ  KC RCG
Sbjct: 457 AYAEPIFPVGHVSTWNSSPEFVNIPVEPPKTVPRVGRRKTTRIPSTGEVRQTRKCGRCG 515

[Close]

BLAST of Lag0027244 vs. NCBI nr
Match: XP_022156977.1 (uncharacterized protein LOC111023804 [Momordica charantia])

HSP 1 Score: 88.2 bits (217), Expect = 9.1e-14
Identity = 40/59 (67.80%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 36  SYAEPIYPVGHVSEWKTFENFVDFEVLWPKRVPRVGRRQTLRIPSTGEVRQVHKCTRCG 95
           +YAEPI+PVGHVS W +   FV+  V  PK VPRVGRR+T RIPSTGEVRQ  KC RCG
Sbjct: 113 AYAEPIFPVGHVSTWNSSPEFVNIPVEPPKTVPRVGRRKTTRIPSTGEVRQTRKCGRCG 171

[Close]

BLAST of Lag0027244 vs. ExPASy TrEMBL
Match: A0A6J1CR19 (uncharacterized protein LOC111013803 OS=Momordica charantia OX=3673 GN=LOC111013803 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.5e-14
Identity = 40/59 (67.80%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 36  SYAEPIYPVGHVSEWKTFENFVDFEVLWPKRVPRVGRRQTLRIPSTGEVRQVHKCTRCG 95
           +YAEPI+PVGHVS W +   FV+  V  PK VPRVGRR+T RIPSTGEVRQ  KC+RCG
Sbjct: 88  AYAEPIFPVGHVSTWNSSPEFVNIPVKPPKTVPRVGRRKTARIPSTGEVRQTRKCSRCG 146

[Close]

BLAST of Lag0027244 vs. ExPASy TrEMBL
Match: A0A6J1D4G8 (uncharacterized protein LOC111016889 OS=Momordica charantia OX=3673 GN=LOC111016889 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.6e-14
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 36  SYAEPIYPVGHVSEWKTFENFVDFEVLWPKRVPRVGRRQTLRIPSTGEVRQVHKCTRCG 95
           +YAEPI+P+GHVS WK+  +FVD  V  P  VPRVGRR+T+RIPSTGEVR+  KC RCG
Sbjct: 250 AYAEPIFPIGHVSTWKSSPDFVDTPVEAPDMVPRVGRRRTVRIPSTGEVRETRKCGRCG 308

[Close]

BLAST of Lag0027244 vs. ExPASy TrEMBL
Match: A0A6J1DYC4 (uncharacterized protein LOC111025678 OS=Momordica charantia OX=3673 GN=LOC111025678 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.4e-14
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 36  SYAEPIYPVGHVSEWKTFENFVDFEVLWPKRVPRVGRRQTLRIPSTGEVRQVHKCTRCG 95
           +YAEPI+PVGH+S W +   FV+  V  PK VPRVGRR+T+RIPSTGEVRQ  KC RCG
Sbjct: 439 AYAEPIFPVGHISTWNSSPEFVNIPVEPPKTVPRVGRRKTVRIPSTGEVRQTRKCGRCG 497

[Close]

BLAST of Lag0027244 vs. ExPASy TrEMBL
Match: A0A6J1DTD4 (uncharacterized protein LOC111023804 OS=Momordica charantia OX=3673 GN=LOC111023804 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 4.4e-14
Identity = 40/59 (67.80%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 36  SYAEPIYPVGHVSEWKTFENFVDFEVLWPKRVPRVGRRQTLRIPSTGEVRQVHKCTRCG 95
           +YAEPI+PVGHVS W +   FV+  V  PK VPRVGRR+T RIPSTGEVRQ  KC RCG
Sbjct: 113 AYAEPIFPVGHVSTWNSSPEFVNIPVEPPKTVPRVGRRKTTRIPSTGEVRQTRKCGRCG 171

[Close]

BLAST of Lag0027244 vs. ExPASy TrEMBL
Match: A0A6J1CYE7 (uncharacterized protein LOC111015601 OS=Momordica charantia OX=3673 GN=LOC111015601 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 4.4e-14
Identity = 40/59 (67.80%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 36  SYAEPIYPVGHVSEWKTFENFVDFEVLWPKRVPRVGRRQTLRIPSTGEVRQVHKCTRCG 95
           +YAEPI+PVGHVS W +   FV+  V  PK VPRVGRR+T RIPSTGEVRQ  KC RCG
Sbjct: 380 AYAEPIFPVGHVSTWNSSPEFVNIPVEPPKTVPRVGRRKTTRIPSTGEVRQTRKCGRCG 438

The following BLAST results are available for this feature:

BLAST of Lag0027244 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144014.1	3.1e-14	67.80	uncharacterized protein LOC111013803 [Momordica charantia]	[more]
XP_022148136.1	5.3e-14	66.10	uncharacterized protein LOC111016889 [Momordica charantia]	[more]
XP_022159268.1	7.0e-14	66.10	uncharacterized protein LOC111025678 [Momordica charantia]	[more]
XP_022145820.1	9.1e-14	67.80	uncharacterized protein LOC111015181 [Momordica charantia]	[more]
XP_022156977.1	9.1e-14	67.80	uncharacterized protein LOC111023804 [Momordica charantia]	[more]

BLAST of Lag0027244 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0027244 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CR19	1.5e-14	67.80	uncharacterized protein LOC111013803 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1D4G8	2.6e-14	66.10	uncharacterized protein LOC111016889 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A6J1DYC4	3.4e-14	66.10	uncharacterized protein LOC111025678 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DTD4	4.4e-14	67.80	uncharacterized protein LOC111023804 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1CYE7	4.4e-14	67.80	uncharacterized protein LOC111015601 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]

BLAST of Lag0027244 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..175

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0027244.1	Lag0027244.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006310	DNA recombination
biological_process	GO:0032196	transposition
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding