Lag0027173 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0027173
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRibonuclease H-like superfamily protein
Locationchr10: 45588104 .. 45588460 (+)
RNA-Seq ExpressionLag0027173
SyntenyLag0027173
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCTCTAATCTATCTCTGGAAGATGCTAAAGGGGCGATTATCATGTGGAGTGTGTGGAATTTCAGTAACAAGGCTCATGTGACAAACAAGCCTCCAGAAATTGAAAGACTTAGGAATTCCATTGACAACAACATTTCAAAATGGAAGAACTCTTACCTTAAGAGGGAAGAGTCGAAGCCATTGAGGAGCCAAGCGAGTCAGGCAATCTGGAAAAAACCTCAGCCCAACTCCTGGAAATTGAACGCGGACGCAACATGGTTTGAAGATCGAAACAGAGGCAGAATCGGTTGGGTGGTGCATGACTCGAATGGATCCTTGATCAATCTCGACATGAAACAAATTAATCGGAAATGA

mRNA sequence

ATGGTCTCTAATCTATCTCTGGAAGATGCTAAAGGGGCGATTATCATGTGGAGTGTGTGGAATTTCAGTAACAAGGCTCATGTGACAAACAAGCCTCCAGAAATTGAAAGACTTAGGAATTCCATTGACAACAACATTTCAAAATGGAAGAACTCTTACCTTAAGAGGGAAGAGTCGAAGCCATTGAGGAGCCAAGCGAGTCAGGCAATCTGGAAAAAACCTCAGCCCAACTCCTGGAAATTGAACGCGGACGCAACATGGTTTGAAGATCGAAACAGAGGCAGAATCGGTTGGGTGGTGCATGACTCGAATGGATCCTTGATCAATCTCGACATGAAACAAATTAATCGGAAATGA

Coding sequence (CDS)

ATGGTCTCTAATCTATCTCTGGAAGATGCTAAAGGGGCGATTATCATGTGGAGTGTGTGGAATTTCAGTAACAAGGCTCATGTGACAAACAAGCCTCCAGAAATTGAAAGACTTAGGAATTCCATTGACAACAACATTTCAAAATGGAAGAACTCTTACCTTAAGAGGGAAGAGTCGAAGCCATTGAGGAGCCAAGCGAGTCAGGCAATCTGGAAAAAACCTCAGCCCAACTCCTGGAAATTGAACGCGGACGCAACATGGTTTGAAGATCGAAACAGAGGCAGAATCGGTTGGGTGGTGCATGACTCGAATGGATCCTTGATCAATCTCGACATGAAACAAATTAATCGGAAATGA

Protein sequence

MVSNLSLEDAKGAIIMWSVWNFSNKAHVTNKPPEIERLRNSIDNNISKWKNSYLKREESKPLRSQASQAIWKKPQPNSWKLNADATWFEDRNRGRIGWVVHDSNGSLINLDMKQINRK
Homology
BLAST of Lag0027173 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 68.2 bits (165), Expect = 5.5e-08
Identity = 40/116 (34.48%), Postives = 56/116 (48.28%), Query Frame = 0

Query: 8   EDAKGAIIMWSVWNFSNKAHVTNKPPEIERLRNSIDNNI--SKWKNSYLK-REESKPLR- 67
           E  +  II W +W   NK+      PE   ++ +ID  I  S  +N+ LK +  +K L  
Sbjct: 8   ERRRSMIIAWQIWEMRNKSIFKGVHPETRDIQLAIDRYIINSAGRNTNLKGKSTNKDLHL 67

Query: 68  ----SQASQAIWKKPQPNSWKLNADATWFEDRNRGRIGWVVHDSNGSLINLDMKQI 116
                  + A WK P  NSWKLN +A W  D N G IGW++ D  G +I    + I
Sbjct: 68  IRRIEDNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRII 123

BLAST of Lag0027173 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 66.2 bits (160), Expect = 2.1e-07
Identity = 40/116 (34.48%), Postives = 55/116 (47.41%), Query Frame = 0

Query: 8   EDAKGAIIMWSVWNFSNKAHVTNKPPEIERLRNSIDNNI--SKWKNSYLK-REESKPLR- 67
           E  +  II W +W   NK+       E   ++  ID  I  S  +++ LK +  +K L  
Sbjct: 8   ERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKSANKDLHL 67

Query: 68  ----SQASQAIWKKPQPNSWKLNADATWFEDRNRGRIGWVVHDSNGSLINLDMKQI 116
                  + A WK P  NSWKLN DA W  D N G IGW++ D  G +I  D + I
Sbjct: 68  IRRIGDNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRII 123

BLAST of Lag0027173 vs. NCBI nr
Match: XP_022154990.1 (uncharacterized protein LOC111022134 isoform X1 [Momordica charantia])

HSP 1 Score: 61.6 bits (148), Expect = 5.2e-06
Identity = 37/107 (34.58%), Postives = 54/107 (50.47%), Query Frame = 0

Query: 8   EDAKGAIIMWSVWNFSNKAHVTNKPPEIERLRNSIDNNI--SKWKNSYLKR--EESKPLR 67
           E  +  II   +W   NK+       E   ++ +ID  I  S  +++ LKR  ++  P+R
Sbjct: 186 ERRRSMIIACQIWEMRNKSIFKGVHSETRDIQLAIDRYIINSAGQDTNLKRKSKDFHPIR 245

Query: 68  --SQASQAIWKKPQPNSWKLNADATWFEDRNRGRIGWVVHDSNGSLI 109
                ++A WK P  NSWKLN DA W  D N   IGW++ D  G +I
Sbjct: 246 RIGDNTRARWKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEKGEVI 292

BLAST of Lag0027173 vs. NCBI nr
Match: XP_022154991.1 (uncharacterized protein LOC111022134 isoform X2 [Momordica charantia])

HSP 1 Score: 61.6 bits (148), Expect = 5.2e-06
Identity = 37/107 (34.58%), Postives = 54/107 (50.47%), Query Frame = 0

Query: 8   EDAKGAIIMWSVWNFSNKAHVTNKPPEIERLRNSIDNNI--SKWKNSYLKR--EESKPLR 67
           E  +  II   +W   NK+       E   ++ +ID  I  S  +++ LKR  ++  P+R
Sbjct: 151 ERRRSMIIACQIWEMRNKSIFKGVHSETRDIQLAIDRYIINSAGQDTNLKRKSKDFHPIR 210

Query: 68  --SQASQAIWKKPQPNSWKLNADATWFEDRNRGRIGWVVHDSNGSLI 109
                ++A WK P  NSWKLN DA W  D N   IGW++ D  G +I
Sbjct: 211 RIGDNTRARWKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEKGEVI 257

BLAST of Lag0027173 vs. NCBI nr
Match: XP_022148549.1 (uncharacterized protein LOC111017181 [Momordica charantia])

HSP 1 Score: 60.8 bits (146), Expect = 8.8e-06
Identity = 31/101 (30.69%), Postives = 53/101 (52.48%), Query Frame = 0

Query: 12  GAIIMWSVWNFSNK-AHVTNKPPEIERLRNSIDNNISKWKNSY---LKREESKPLRSQAS 71
           G +++WS+W + N+  H T + P  +++R   ++ I ++  +    L  E+    R+   
Sbjct: 19  GLVLLWSIWTYRNQIVHSTIEQPCSQKIRAFTESKIYEFTTNLGGNLNMEDKNLPRTVG- 78

Query: 72  QAIWKKPQPNSWKLNADATWFEDRNRGRIGWVVHDSNGSLI 109
              W  P  + WKLN DATW +  + G +GW+V DS G  I
Sbjct: 79  ---WTPPAQHLWKLNVDATWMDSLHAGGLGWIVRDSEGRFI 115

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022143535.15.5e-0834.48uncharacterized protein LOC111013412 [Momordica charantia][more]
XP_022156777.12.1e-0734.48uncharacterized protein LOC111023608 [Momordica charantia][more]
XP_022154990.15.2e-0634.58uncharacterized protein LOC111022134 isoform X1 [Momordica charantia][more]
XP_022154991.15.2e-0634.58uncharacterized protein LOC111022134 isoform X2 [Momordica charantia][more]
XP_022148549.18.8e-0630.69uncharacterized protein LOC111017181 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0027173.1Lag0027173.1mRNA