Lag0027151 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0027151
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionmitochondrial import inner membrane translocase subunit Tim9
Locationchr10: 45438007 .. 45439890 (+)
RNA-Seq ExpressionLag0027151
SyntenyLag0027151
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAGGGCATGCTTGCTGATTTGGAGGGTCTTCCTGAAGAAGACAAGCTCAAAATGGCCACCATGATCGACCAGCTCCAGATCCGAGACAGGTTCTATTTACATATTTGAAAACTTCGAGTTTTGAACAGGAGCTAATCTATTGAATCGTTCTCTTGTTATACACGTTGTTTGTATCTTTAAATGGTGCGGTATGGTGGAAGTTTGACTGGAATTTTCCTCCGTCAATTGATTTCAATATCATTCGCTGGGAGGGCATTGAATTGCGCGAAGATTGATATTTACCTGATCAATTTTACTTGTCCGATTCATTGGTCTTTGTTTGTTTCTCGTTAATTTGTATGGTTCTTTTTTCTATATCCTTAATGCTTCAAGTTTGGTTGGAGATTTTTTGAATGCGCTTGGACATCTTTAAATGAACCGTGGAAGGATTGGAATTGTTACAGATACAGGTCAATGTGTGGGTGGTAAAATGGAAAACTGGATTTGGGGCTTGTGTGATTATGGTGCAACCAGAATAAGAGCATCTAGCACGGTACCGTAGCTTTAAAGTCATTAGATGACGTGCTCTGAGAAAGATTCTGCAACTTAAATTTCCACCACCAGATTTTGGAAGCTTGTTTACTGTACTGTTTTTGGTATAATTTGATTAAATTTTTGTGAGGTTTGAGACCACCTCATAGATAACCACTGTGGATTAGTGATCAATAAGAATCCATGTAAATAGCAAAGGCCTTCAAGAGAACAAGTTCAGTTTACAGTAGACACCTACATAGGATTTAAATATCTTAGAGTCACTCTAGTAACTAAATGTAATAGGATCAAGCGATTGATTTGCGAATTTGGATTTAATATCTTATGAGTTACTGTTGGGAGTGCGACCAAAGTCCCACATTAGCTAGGCAAGTGGGTAATCATGGTATATAAGGCTCTATTGGTATGATGTCTTTTGGATGGAACTAAAAGCAAAGCCATGATGGTTTATTTCCAAAGTGGACAATATCATACCACAGTGGAGATATGGAGTGTTGGTTGACCTTAACAGTTAAGTTACCTTAGCAATCAAATGTAGAGATCAGGCCATTGTTTCCGTGAAAATAGTCAGGGTGTGTATAAACTAGCTAGGATACACATTATGTTTCAAAAAACCACTTTATAGATTGTTTTTTTTATAATCGCGGTATTGGCTCCTGCACCGTAGTCTTAGACCACGCACCCTGGCCACAGGAACTCAGAGTTCATACCTCCTAGCACCCCAAGTCCTCAACCAACAGACTAACCGAAGGCCGCCCCTTCAGGTCTCCGATGGTATCATTTATTTTTTTTGACACAGTTCAGTGTGCTGAAATTTGAGTGCTGGTCAAAATTCAAAGCAATATCTCAATGGAACTGCTATTTCCTTCTGAATATACTCCTGAAAAGGGAACTGATGGAGTGATCTTAATTTGATCTGGGATGAATATACTTTATATTGAAAAGACTGCACAAGATTACTATACAGATCATGCTACTCTTTTACTCCAGTTTAATTTATGTTAGTATCCAATGTGTGATTTTTCTTCTTTTTACGACTTTATTCTACTCTGGTCTCAGTGCTGTAACTTACTGCATATGACAGAATAAAGTTGTCAATTTTCATCACGCTAAGATCAAAACACATTCAGAGTGATAACTGTTTGCCTTCTAAATTGCAGTCTGAGAATGTACAACTCCTTGGTCGAGAGATGCTTCACAGATTGCATAGACAACTTTCAGCGAAAATCCTTGACCAAGCAAGAGGAAACATGTGTACGTAGGTGTGCCGAGAAGTTCTTGAAGCACTCGATGCGCGTCGGCATGAGATTTGCTGAGCTCAACCAAGGAGCTGCTACCTCAGATTAA

mRNA sequence

ATGGACAAGGGCATGCTTGCTGATTTGGAGGGTCTTCCTGAAGAAGACAAGCTCAAAATGGCCACCATGATCGACCAGCTCCAGATCCGAGACAGTCTGAGAATGTACAACTCCTTGGTCGAGAGATGCTTCACAGATTGCATAGACAACTTTCAGCGAAAATCCTTGACCAAGCAAGAGGAAACATGTGTACGTAGGTGTGCCGAGAAGTTCTTGAAGCACTCGATGCGCGTCGGCATGAGATTTGCTGAGCTCAACCAAGGAGCTGCTACCTCAGATTAA

Coding sequence (CDS)

ATGGACAAGGGCATGCTTGCTGATTTGGAGGGTCTTCCTGAAGAAGACAAGCTCAAAATGGCCACCATGATCGACCAGCTCCAGATCCGAGACAGTCTGAGAATGTACAACTCCTTGGTCGAGAGATGCTTCACAGATTGCATAGACAACTTTCAGCGAAAATCCTTGACCAAGCAAGAGGAAACATGTGTACGTAGGTGTGCCGAGAAGTTCTTGAAGCACTCGATGCGCGTCGGCATGAGATTTGCTGAGCTCAACCAAGGAGCTGCTACCTCAGATTAA

Protein sequence

MDKGMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFTDCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD
Homology
BLAST of Lag0027151 vs. NCBI nr
Match: XP_004137789.1 (mitochondrial import inner membrane translocase subunit Tim9 [Cucumis sativus] >XP_008442550.1 PREDICTED: mitochondrial import inner membrane translocase subunit Tim9 [Cucumis melo] >XP_038902990.1 mitochondrial import inner membrane translocase subunit Tim9 [Benincasa hispida] >KAA0044090.1 Mitochondrial import inner membrane translocase subunit Tim9 [Cucumis melo var. makuwa] >KGN58871.1 hypothetical protein Csa_000826 [Cucumis sativus] >TYK25047.1 Mitochondrial import inner membrane translocase subunit Tim9 [Cucumis melo var. makuwa])

HSP 1 Score: 183.3 bits (464), Expect = 9.3e-43
Identity = 90/93 (96.77%), Postives = 92/93 (98.92%), Query Frame = 0

Query: 1  MDKGMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFTDCIDNFQRKSLTKQE 60
          MDK MLADL+GLPEEDK+KMATMIDQLQIRDSLRMYNSLVERCFTDCIDNFQRKSLTKQE
Sbjct: 1  MDKNMLADLDGLPEEDKIKMATMIDQLQIRDSLRMYNSLVERCFTDCIDNFQRKSLTKQE 60

Query: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD 94
          ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD
Sbjct: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD 93

BLAST of Lag0027151 vs. NCBI nr
Match: XP_022934857.1 (mitochondrial import inner membrane translocase subunit Tim9 [Cucurbita moschata] >XP_022983427.1 mitochondrial import inner membrane translocase subunit Tim9 [Cucurbita maxima] >XP_023528173.1 mitochondrial import inner membrane translocase subunit Tim9 [Cucurbita pepo subsp. pepo] >KAG6580543.1 Mitochondrial import inner membrane translocase subunit Tim9, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017295.1 Mitochondrial import inner membrane translocase subunit Tim9 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 183.3 bits (464), Expect = 9.3e-43
Identity = 91/93 (97.85%), Postives = 91/93 (97.85%), Query Frame = 0

Query: 1  MDKGMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFTDCIDNFQRKSLTKQE 60
          MDK MLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCF DCIDNFQRKSLTKQE
Sbjct: 1  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQE 60

Query: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD 94
          ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD
Sbjct: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD 93

BLAST of Lag0027151 vs. NCBI nr
Match: XP_022145535.1 (mitochondrial import inner membrane translocase subunit Tim9-like [Momordica charantia])

HSP 1 Score: 181.4 bits (459), Expect = 3.5e-42
Identity = 89/93 (95.70%), Postives = 92/93 (98.92%), Query Frame = 0

Query: 1  MDKGMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFTDCIDNFQRKSLTKQE 60
          MDK MLADL+GLP+EDKLKMA+MIDQLQIRDSLRMYNSLVERCFTDCIDNFQRKSLTKQE
Sbjct: 1  MDKSMLADLDGLPDEDKLKMASMIDQLQIRDSLRMYNSLVERCFTDCIDNFQRKSLTKQE 60

Query: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD 94
          ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD
Sbjct: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD 93

BLAST of Lag0027151 vs. NCBI nr
Match: PON38573.1 (Tim10/DDP family zinc finger [Parasponia andersonii] >PON76124.1 Tim10/DDP family zinc finger [Trema orientale])

HSP 1 Score: 176.4 bits (446), Expect = 1.1e-40
Identity = 87/93 (93.55%), Postives = 90/93 (96.77%), Query Frame = 0

Query: 1  MDKGMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFTDCIDNFQRKSLTKQE 60
          MDK MLADL+ LPEEDKL+M+TMIDQLQIRDSLRMYNSLVERCFTDCID FQRKSLTKQE
Sbjct: 1  MDKTMLADLDSLPEEDKLRMSTMIDQLQIRDSLRMYNSLVERCFTDCIDTFQRKSLTKQE 60

Query: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD 94
          ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD
Sbjct: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD 93

BLAST of Lag0027151 vs. NCBI nr
Match: XP_042940042.1 (mitochondrial import inner membrane translocase subunit Tim9 [Carya illinoinensis] >KAG2690548.1 hypothetical protein I3760_09G192200 [Carya illinoinensis] >KAG6643177.1 hypothetical protein CIPAW_09G192600 [Carya illinoinensis] >KAG7964792.1 hypothetical protein I3843_09G188700 [Carya illinoinensis])

HSP 1 Score: 174.1 bits (440), Expect = 5.6e-40
Identity = 84/93 (90.32%), Postives = 90/93 (96.77%), Query Frame = 0

Query: 1  MDKGMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFTDCIDNFQRKSLTKQE 60
          MDK MLADLE LPEEDK++M+TMI+QLQIRDSLRMYNSLVERCFTDC+D FQRKSLTKQE
Sbjct: 1  MDKSMLADLESLPEEDKVRMSTMIEQLQIRDSLRMYNSLVERCFTDCVDTFQRKSLTKQE 60

Query: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD 94
          ETCVRRCAEKFLKHSMRVGMRFAELNQGAAT+D
Sbjct: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATTD 93

BLAST of Lag0027151 vs. ExPASy Swiss-Prot
Match: Q9XGX7 (Mitochondrial import inner membrane translocase subunit Tim9 OS=Oryza sativa subsp. japonica OX=39947 GN=TIM9 PE=3 SV=2)

HSP 1 Score: 165.6 bits (418), Expect = 2.6e-40
Identity = 78/93 (83.87%), Postives = 86/93 (92.47%), Query Frame = 0

Query: 1  MDKGMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFTDCIDNFQRKSLTKQE 60
          MDK ML DL+GLPEEDK++MA M+DQLQIRDSLRMYNSLVERCFTDC+D F+RK+L KQE
Sbjct: 1  MDKSMLGDLDGLPEEDKMRMAAMVDQLQIRDSLRMYNSLVERCFTDCVDTFRRKTLDKQE 60

Query: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD 94
          E+CVRRCAEKFLKHSMRVGMRFAELNQG AT D
Sbjct: 61 ESCVRRCAEKFLKHSMRVGMRFAELNQGVATPD 93

BLAST of Lag0027151 vs. ExPASy Swiss-Prot
Match: Q9XGX8 (Mitochondrial import inner membrane translocase subunit Tim9 OS=Mesembryanthemum crystallinum OX=3544 GN=TIM9 PE=3 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 3.4e-40
Identity = 78/93 (83.87%), Postives = 89/93 (95.70%), Query Frame = 0

Query: 1  MDKGMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFTDCIDNFQRKSLTKQE 60
          MDK ML DL+ LPEEDKLKMA+MI+QLQIRDSLRMYN+LVERCFTDC+D+F+RK+L KQE
Sbjct: 1  MDKNMLGDLDNLPEEDKLKMASMIEQLQIRDSLRMYNNLVERCFTDCVDSFRRKTLDKQE 60

Query: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD 94
          ETCV+RCAEKFLKHSMRVG+RFAELNQGAAT+D
Sbjct: 61 ETCVKRCAEKFLKHSMRVGLRFAELNQGAATTD 93

BLAST of Lag0027151 vs. ExPASy Swiss-Prot
Match: Q9XGX9 (Mitochondrial import inner membrane translocase subunit TIM9 OS=Arabidopsis thaliana OX=3702 GN=TIM9 PE=1 SV=2)

HSP 1 Score: 156.0 bits (393), Expect = 2.1e-37
Identity = 75/93 (80.65%), Postives = 82/93 (88.17%), Query Frame = 0

Query: 1  MDKGMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFTDCIDNFQRKSLTKQE 60
          MD  M+A L+GLPEEDK KMA+MIDQLQ+RDSLRMYNSLVERCF DC+D+F RKSL KQE
Sbjct: 1  MDASMMAGLDGLPEEDKAKMASMIDQLQLRDSLRMYNSLVERCFVDCVDSFTRKSLQKQE 60

Query: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD 94
          ETCV RCAEKFLKH+MRVGMRFAELNQ A T D
Sbjct: 61 ETCVMRCAEKFLKHTMRVGMRFAELNQNAPTQD 93

BLAST of Lag0027151 vs. ExPASy Swiss-Prot
Match: P57745 (Mitochondrial import inner membrane translocase subunit Tim9 OS=Zygosaccharomyces bailii OX=4954 GN=TIM9 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.1e-17
Identity = 37/78 (47.44%), Postives = 59/78 (75.64%), Query Frame = 0

Query: 9  LEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFTDCIDNFQRKSLTKQEETCVRRCA 68
          ++ L   ++ + + +I+  Q++D +R+Y++LVERCFTDC+++F    LT +E+TC+ RC+
Sbjct: 1  MDSLNPREQQEFSKLIEHKQMKDFMRLYSNLVERCFTDCVNDFTSSKLTSKEQTCISRCS 60

Query: 69 EKFLKHSMRVGMRFAELN 87
          EKFLKHS RVG+RF E N
Sbjct: 61 EKFLKHSERVGLRFQEQN 78

BLAST of Lag0027151 vs. ExPASy Swiss-Prot
Match: O74700 (Mitochondrial import inner membrane translocase subunit TIM9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TIM9 PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.3e-17
Identity = 36/78 (46.15%), Postives = 59/78 (75.64%), Query Frame = 0

Query: 9  LEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFTDCIDNFQRKSLTKQEETCVRRCA 68
          ++ L  +++ +   +++Q Q++D +R+Y++LVERCFTDC+++F    LT +E+TC+ +C+
Sbjct: 1  MDALNSKEQQEFQKVVEQKQMKDFMRLYSNLVERCFTDCVNDFTTSKLTNKEQTCIMKCS 60

Query: 69 EKFLKHSMRVGMRFAELN 87
          EKFLKHS RVG RF E N
Sbjct: 61 EKFLKHSERVGQRFQEQN 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004137789.19.3e-4396.77mitochondrial import inner membrane translocase subunit Tim9 [Cucumis sativus] >... [more]
XP_022934857.19.3e-4397.85mitochondrial import inner membrane translocase subunit Tim9 [Cucurbita moschata... [more]
XP_022145535.13.5e-4295.70mitochondrial import inner membrane translocase subunit Tim9-like [Momordica cha... [more]
PON38573.11.1e-4093.55Tim10/DDP family zinc finger [Parasponia andersonii] >PON76124.1 Tim10/DDP famil... [more]
XP_042940042.15.6e-4090.32mitochondrial import inner membrane translocase subunit Tim9 [Carya illinoinensi... [more]
Match NameE-valueIdentityDescription
Q9XGX72.6e-4083.87Mitochondrial import inner membrane translocase subunit Tim9 OS=Oryza sativa sub... [more]
Q9XGX83.4e-4083.87Mitochondrial import inner membrane translocase subunit Tim9 OS=Mesembryanthemum... [more]
Q9XGX92.1e-3780.65Mitochondrial import inner membrane translocase subunit TIM9 OS=Arabidopsis thal... [more]
P577453.1e-1747.44Mitochondrial import inner membrane translocase subunit Tim9 OS=Zygosaccharomyce... [more]
O747005.3e-1746.15Mitochondrial import inner membrane translocase subunit TIM9 OS=Saccharomyces ce... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR035427Tim10-like domain superfamilyGENE3D1.10.287.810Mitochondrial import inner membrane translocase subunit tim13 like domainscoord: 7..91
e-value: 9.0E-25
score: 88.2
IPR035427Tim10-like domain superfamilySUPERFAMILY144122Tim10-likecoord: 28..89
IPR004217Tim10-likePFAMPF02953zf-Tim10_DDPcoord: 25..84
e-value: 1.3E-19
score: 69.5
NoneNo IPR availablePANTHERPTHR13172MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM9Bcoord: 1..93
NoneNo IPR availablePANTHERPTHR13172:SF3MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM9coord: 1..93

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0027151.1Lag0027151.1mRNA