Lag0027075 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0027075
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	DNA-binding protein S1FA
Location	chr10: 44867540 .. 44868648 (+)
RNA-Seq Expression	Lag0027075
Synteny	Lag0027075

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAGCCAATGGCAAGGTACGGTTGTCGAAGGAATCCCCCTTTGTTTCTTGCCTTTTCCGTTCAATTTCACGAGATCTGTGCTTTTTGGATTCCATTTTTGATTCTGTGTTCGAATGCCTTTTTCCTTCAATTTCGTTGTTTGGATCGATCTGGGTGCGTTGGGAATCGTCTTTTGTTCTTTTCTGAAAGCTCGATTTCATCTGGTTGGGCGGCGATTTGATTAGCGAGTGCTGGTTCGGATCGAAATTTTGTTTTGGGTTTTTTTGGCTGGGATTCCACGGGCGGGAAATTGAGCTTCTGATTGTTTGGCGCACGCATTGTAGGACCTGTAAATCTTGGTTCTAGAAATGGAATTTGTCTCTGGGGGGAAAATTTAGGGATGGATGAGCCGTACTGGCGAATTGTCGTTTTGAATTGGGGAAAATTTTAGGGATAGATGAACCGTACAGGCGAATTGTCGTTTCAAATTGGGTAATTTCGAGTGGATGGGTTGTGAATGTGTGATCAGACTGGTTTGTAATATCTGCATTCATCATTGAAGTTTGGATGATATTTGAAATTATTATTTGTTTTGTGGAGAACTAATTTAAGATCAAAAGTGGGCTAGGTTTGAGAAATATGATGAGAGTGAGAGAAGCCATTTTGGTTTATGCCCTAGAGTTGGCTTGTTCTATGATTAGTTGAATTGTGATTTCTCATTATTAGAAGTGAATCTCCATTTCTGATAGCGTCTAATTAGAAATTCCCTCATGAGATCTAAGTATAATTTAGATCATCCATTACTTTTGAAAAATATGTCATGATGGGTCTTGTTTATTGAAAACATCAACTTTGATTTTGTGGCTCATTGGTGATGGTTTATTAATTGTTGTTCTGCAAGTGAACAGGGAAATGTAATGAATGATGTTGAAGCAAAAGGATTCAATCCAGGGCTAATAGTGCTTCTTCTTGTTGGTGGGTTGCTGCTGATTTTCCTCATAGGGAACTATGCACTTTACTTGTATGCACAGAAGAATCTCCCTCCCAAGAAGAAAAAGCCAGTATCTAAAAAGAAGATGAAGAGGGAAAGACTGAAGCAAGGAGTGTCTGCACCTGGAGAGTAA

mRNA sequence

ATGGCTTCAGCCAATGGCAAGGGAAATGTAATGAATGATGTTGAAGCAAAAGGATTCAATCCAGGGCTAATAGTGCTTCTTCTTGTTGGTGGGTTGCTGCTGATTTTCCTCATAGGGAACTATGCACTTTACTTGTATGCACAGAAGAATCTCCCTCCCAAGAAGAAAAAGCCAGTATCTAAAAAGAAGATGAAGAGGGAAAGACTGAAGCAAGGAGTGTCTGCACCTGGAGAGTAA

Coding sequence (CDS)

ATGGCTTCAGCCAATGGCAAGGGAAATGTAATGAATGATGTTGAAGCAAAAGGATTCAATCCAGGGCTAATAGTGCTTCTTCTTGTTGGTGGGTTGCTGCTGATTTTCCTCATAGGGAACTATGCACTTTACTTGTATGCACAGAAGAATCTCCCTCCCAAGAAGAAAAAGCCAGTATCTAAAAAGAAGATGAAGAGGGAAAGACTGAAGCAAGGAGTGTCTGCACCTGGAGAGTAA

Protein sequence

MASANGKGNVMNDVEAKGFNPGLIVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

Homology

[Close]

BLAST of Lag0027075 vs. NCBI nr
Match: XP_023005220.1 (DNA-binding protein S1FA-like isoform X1 [Cucurbita maxima] >XP_023539625.1 DNA-binding protein S1FA-like isoform X1 [Cucurbita pepo subsp. pepo] >KAG6596464.1 DNA-binding protein S1FA2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028009.1 DNA-binding protein S1FA2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.8 bits (364), Expect = 3.1e-31
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MASANGKGNVMNDVEAKGFNPGLIVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVS 60
          MASANGKGNVMNDV AKGFNPGL+VLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVS
Sbjct: 1  MASANGKGNVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVS 60

Query: 61 KKKMKRERLKQGVSAPGE 79
          KKKMKRERLKQGVSAPGE
Sbjct: 61 KKKMKRERLKQGVSAPGE 78

[Close]

BLAST of Lag0027075 vs. NCBI nr
Match: XP_038905724.1 (DNA-binding protein S1FA-like [Benincasa hispida])

HSP 1 Score: 144.1 bits (362), Expect = 5.3e-31
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MASANGKGNVMNDVEAKGFNPGLIVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVS 60
          MASANGKGNV+NDVEAKGFNP LIVLLLVGGLLLIFL+GNYALYLYAQKNLPPKKKKPVS
Sbjct: 1  MASANGKGNVINDVEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS 60

Query: 61 KKKMKRERLKQGVSAPGE 79
          KKKMKRERLKQGVSAPGE
Sbjct: 61 KKKMKRERLKQGVSAPGE 78

[Close]

BLAST of Lag0027075 vs. NCBI nr
Match: KAE8651038.1 (hypothetical protein Csa_000825 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 6.9e-31
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1   MASANGKGNVMNDVEAKGFNPGLIVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVS 60
           MASANGKGNV+ND+EAKGFNP LIVLLLVGGLLLIFL+GNYALYLYAQKNLPPKKKKPVS
Sbjct: 819 MASANGKGNVINDIEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS 878

Query: 61  KKKMKRERLKQGVSAPGE 79
           KKKMKRERLKQGVSAPGE
Sbjct: 879 KKKMKRERLKQGVSAPGE 896

[Close]

BLAST of Lag0027075 vs. NCBI nr
Match: XP_004137812.1 (DNA-binding protein S1FA [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 6.9e-31
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MASANGKGNVMNDVEAKGFNPGLIVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVS 60
          MASANGKGNV+ND+EAKGFNP LIVLLLVGGLLLIFL+GNYALYLYAQKNLPPKKKKPVS
Sbjct: 1  MASANGKGNVINDIEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS 60

Query: 61 KKKMKRERLKQGVSAPGE 79
          KKKMKRERLKQGVSAPGE
Sbjct: 61 KKKMKRERLKQGVSAPGE 78

[Close]

BLAST of Lag0027075 vs. NCBI nr
Match: XP_008442666.1 (PREDICTED: DNA-binding protein S1FA-like [Cucumis melo])

HSP 1 Score: 142.1 bits (357), Expect = 2.0e-30
Identity = 74/78 (94.87%), Postives = 76/78 (97.44%), Query Frame = 0


Query: 1  MASANGKGNVMNDVEAKGFNPGLIVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVS 60
          MASANGKGNV+NDVEAKGFNP LIVLLLVGGLLL FL+GNYALYLYAQKNLPPKKKKPVS
Sbjct: 1  MASANGKGNVINDVEAKGFNPALIVLLLVGGLLLTFLVGNYALYLYAQKNLPPKKKKPVS 60

Query: 61 KKKMKRERLKQGVSAPGE 79
          KKKMKRERLKQGVSAPGE
Sbjct: 61 KKKMKRERLKQGVSAPGE 78

[Close]

BLAST of Lag0027075 vs. ExPASy Swiss-Prot
Match: P42552 (DNA-binding protein S1FA OS=Spinacia oleracea OX=3562 GN=S1FA PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 4.9e-24
Identity = 55/68 (80.88%), Postives = 63/68 (92.65%), Query Frame = 0


Query: 11 MNDVEAKGFNPGLIVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLK 70
          +N+VEAKG NPGLIVLL++GGLLL FL+GN+ LY YAQKNLPPKKKKP+SKKKMKRERLK
Sbjct: 3  VNEVEAKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPKKKKPISKKKMKRERLK 62

Query: 71 QGVSAPGE 79
          QGV+ PGE
Sbjct: 63 QGVAPPGE 70

[Close]

BLAST of Lag0027075 vs. ExPASy Swiss-Prot
Match: P42551 (DNA-binding protein S1FA1 OS=Arabidopsis thaliana OX=3702 GN=S1FA1 PE=3 SV=2)

HSP 1 Score: 102.8 bits (255), Expect = 1.8e-21
Identity = 52/64 (81.25%), Postives = 58/64 (90.62%), Query Frame = 0


Query: 15 EAKGFNPGLIVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVS 74
          EAKG NPGLIVLL+VGG LL+FLI NY LY+YAQKNLPP+KKKPVSKKK+KRE+LKQGV 
Sbjct: 13 EAKGLNPGLIVLLVVGGPLLVFLIANYVLYVYAQKNLPPRKKKPVSKKKLKREKLKQGVP 72

Query: 75 APGE 79
           PGE
Sbjct: 73 VPGE 76

[Close]

BLAST of Lag0027075 vs. ExPASy Swiss-Prot
Match: Q42337 (DNA-binding protein S1FA2 OS=Arabidopsis thaliana OX=3702 GN=S1FA2 PE=3 SV=2)

HSP 1 Score: 102.4 bits (254), Expect = 2.3e-21
Identity = 53/78 (67.95%), Postives = 64/78 (82.05%), Query Frame = 0


Query: 1  MASANGKGNVMNDVEAKGFNPGLIVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVS 60
          M+S    G  +  VEAKG NPGLIVLL++GGLL+ FLI NY +Y+YAQKNLPP+KKKP+S
Sbjct: 1  MSSDGSAGKAV--VEAKGLNPGLIVLLVIGGLLVTFLIANYVMYMYAQKNLPPRKKKPLS 60

Query: 61 KKKMKRERLKQGVSAPGE 79
          KKK+KRE+LKQGV  PGE
Sbjct: 61 KKKLKREKLKQGVPVPGE 76

[Close]

BLAST of Lag0027075 vs. ExPASy Swiss-Prot
Match: Q93VI0 (DNA-binding protein S1FA3 OS=Arabidopsis thaliana OX=3702 GN=S1FA3 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 3.0e-21
Identity = 49/65 (75.38%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 14 VEAKGFNPGLIVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGV 73
          +E+KG NPGLIVLL++GGLLL FL+GN+ LY YAQKNLPP+KKKPVSKKKMK+E++KQGV
Sbjct: 9  IESKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPRKKKPVSKKKMKKEKMKQGV 68

Query: 74 SAPGE 79
            PGE
Sbjct: 69 QVPGE 73

[Close]

BLAST of Lag0027075 vs. ExPASy Swiss-Prot
Match: Q7XLX6 (DNA-binding protein S1FA2 OS=Oryza sativa subsp. japonica OX=39947 GN=S1FA2 PE=3 SV=2)

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-20
Identity = 51/75 (68.00%), Postives = 62/75 (82.67%), Query Frame = 0


Query: 4  ANGKGNVMNDVEAKGFNPGLIVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKK 63
          A+   NV+ +   KG NPG+IVL++V   LL+F +GNYALY+YAQK LPP+KKKPVSKKK
Sbjct: 6  ADSANNVVIEEVNKGLNPGMIVLIVVATFLLLFFVGNYALYVYAQKTLPPRKKKPVSKKK 65

Query: 64 MKRERLKQGVSAPGE 79
          MKRE+LKQGVSAPGE
Sbjct: 66 MKREKLKQGVSAPGE 80

The following BLAST results are available for this feature:

BLAST of Lag0027075 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023005220.1	3.1e-31	97.44	DNA-binding protein S1FA-like isoform X1 [Cucurbita maxima] >XP_023539625.1 DNA-...	[more]
XP_038905724.1	5.3e-31	96.15	DNA-binding protein S1FA-like [Benincasa hispida]	[more]
KAE8651038.1	6.9e-31	94.87	hypothetical protein Csa_000825 [Cucumis sativus]	[more]
XP_004137812.1	6.9e-31	94.87	DNA-binding protein S1FA [Cucumis sativus]	[more]
XP_008442666.1	2.0e-30	94.87	PREDICTED: DNA-binding protein S1FA-like [Cucumis melo]	[more]

BLAST of Lag0027075 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42552	4.9e-24	80.88	DNA-binding protein S1FA OS=Spinacia oleracea OX=3562 GN=S1FA PE=3 SV=1	[more]
P42551	1.8e-21	81.25	DNA-binding protein S1FA1 OS=Arabidopsis thaliana OX=3702 GN=S1FA1 PE=3 SV=2	[more]
Q42337	2.3e-21	67.95	DNA-binding protein S1FA2 OS=Arabidopsis thaliana OX=3702 GN=S1FA2 PE=3 SV=2	[more]
Q93VI0	3.0e-21	75.38	DNA-binding protein S1FA3 OS=Arabidopsis thaliana OX=3702 GN=S1FA3 PE=3 SV=1	[more]
Q7XLX6	1.1e-20	68.00	DNA-binding protein S1FA2 OS=Oryza sativa subsp. japonica OX=39947 GN=S1FA2 PE=3...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006779	DNA binding protein S1FA	PFAM	PF04689	S1FA	coord: 14..78 e-value: 2.3E-40 score: 136.5
IPR006779	DNA binding protein S1FA	PANTHER	PTHR35298	DNA-BINDING PROTEIN S1FA2	coord: 6..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..68
None	No IPR available	PANTHER	PTHR35298:SF9	DNA-BINDING PROTEIN S1FA1-RELATED	coord: 6..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0027075.1	Lag0027075.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding