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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCGTCAAGGAGAGGCTTAGGTTTTGGATTCGGTTTCCACTCGAAACCTAACTACATCTATCCGTCGTCGGAGACCGCCGCCGCCGCCGTTCGCCGTCCCGAATCTTCCGTCGATAGTCTATTCGAGTTCGACGAGGCCGATATCTGGACGTCCGGTCAAACTCCGCCGCTGGAGTCGAGGAAGATCTTTCCGATCTCGAAGAAACTGCCGAAGAGAAGCGGCGCGACCACAGCGGCGGAGAAGCCGGTGAAGGCGTCGTCGTCATTGCCGGTCAACATTCCGGATTGGTCGAAGATTCTGCAGAGCGATCAGAGCAAGCACGGCCGGCGAGAAGCAGCGGAGGAGGATTTCGACGACAGCGACGACGACGACGACGATTTACGGCGGGCGCCGCCGCACGAGTATTTGGCGCGAAGACGAGGCGATTCGTTTTCCGTTCACGAAGGGATCGGAAGGACGCTGAAGGGCAGAGATTTGAGAATGGTGAGAAATGCAATTTGGGAAAAAACTGGGTTCGAAGATTAA mRNA sequence ATGGCGTCAAGGAGAGGCTTAGGTTTTGGATTCGGTTTCCACTCGAAACCTAACTACATCTATCCGTCGTCGGAGACCGCCGCCGCCGCCGTTCGCCGTCCCGAATCTTCCGTCGATAGTCTATTCGAGTTCGACGAGGCCGATATCTGGACGTCCGGTCAAACTCCGCCGCTGGAGTCGAGGAAGATCTTTCCGATCTCGAAGAAACTGCCGAAGAGAAGCGGCGCGACCACAGCGGCGGAGAAGCCGGTGAAGGCGTCGTCGTCATTGCCGGTCAACATTCCGGATTGGTCGAAGATTCTGCAGAGCGATCAGAGCAAGCACGGCCGGCGAGAAGCAGCGGAGGAGGATTTCGACGACAGCGACGACGACGACGACGATTTACGGCGGGCGCCGCCGCACGAGTATTTGGCGCGAAGACGAGGCGATTCGTTTTCCGTTCACGAAGGGATCGGAAGGACGCTGAAGGGCAGAGATTTGAGAATGGTGAGAAATGCAATTTGGGAAAAAACTGGGTTCGAAGATTAA Coding sequence (CDS) ATGGCGTCAAGGAGAGGCTTAGGTTTTGGATTCGGTTTCCACTCGAAACCTAACTACATCTATCCGTCGTCGGAGACCGCCGCCGCCGCCGTTCGCCGTCCCGAATCTTCCGTCGATAGTCTATTCGAGTTCGACGAGGCCGATATCTGGACGTCCGGTCAAACTCCGCCGCTGGAGTCGAGGAAGATCTTTCCGATCTCGAAGAAACTGCCGAAGAGAAGCGGCGCGACCACAGCGGCGGAGAAGCCGGTGAAGGCGTCGTCGTCATTGCCGGTCAACATTCCGGATTGGTCGAAGATTCTGCAGAGCGATCAGAGCAAGCACGGCCGGCGAGAAGCAGCGGAGGAGGATTTCGACGACAGCGACGACGACGACGACGATTTACGGCGGGCGCCGCCGCACGAGTATTTGGCGCGAAGACGAGGCGATTCGTTTTCCGTTCACGAAGGGATCGGAAGGACGCTGAAGGGCAGAGATTTGAGAATGGTGAGAAATGCAATTTGGGAAAAAACTGGGTTCGAAGATTAA Protein sequence MASRRGLGFGFGFHSKPNYIYPSSETAAAAVRRPESSVDSLFEFDEADIWTSGQTPPLESRKIFPISKKLPKRSGATTAAEKPVKASSSLPVNIPDWSKILQSDQSKHGRREAAEEDFDDSDDDDDDLRRAPPHEYLARRRGDSFSVHEGIGRTLKGRDLRMVRNAIWEKTGFED
Homology
BLAST of Lag0027063 vs. NCBI nr
Match: XP_038905106.1 (uncharacterized protein LOC120091239 [Benincasa hispida]) HSP 1 Score: 316.6 bits (810), Expect = 1.3e-82 Identity = 157/175 (89.71%), Postives = 163/175 (93.14%), Query Frame = 0
Query: 1 MASRRGLGFGFGFHSKPNYIYPSSETAAAAVRRPESSVDSLFEFDEADIWTSGQTPPLES 60
MASRRGLGFGFGFHSKPNYIYP+S+T VRRPESS D+LFEFDE+DIWTSG TPP ES
Sbjct: 1 MASRRGLGFGFGFHSKPNYIYPASDT----VRRPESSADNLFEFDESDIWTSGPTPPSES 60
Query: 61 RKIFPISKKLPKRSGATTAAEKPVKASSSLPVNIPDWSKILQSDQSKHGRREAAEEDFDD 120
RKIFPISKKLPKRSG TAAEK VKASSSLPVNIPDWSKILQ DQ+KHGRRE AEEDFDD
Sbjct: 61 RKIFPISKKLPKRSGPATAAEKSVKASSSLPVNIPDWSKILQKDQNKHGRREVAEEDFDD 120
Query: 121 SDDDDDDLRRAPPHEYLARRRGDSFSVHEGIGRTLKGRDLRMVRNAIWEKTGFED 176
SDDDDDD+RRAPPHEYLARRRGDSFSVHEGIGRTLKGRDLRMVRNAIWEKTGFED
Sbjct: 121 SDDDDDDIRRAPPHEYLARRRGDSFSVHEGIGRTLKGRDLRMVRNAIWEKTGFED 171
BLAST of Lag0027063 vs. NCBI nr
Match: KAG7028018.1 (hypothetical protein SDJN02_09198, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 307.8 bits (787), Expect = 6.2e-80 Identity = 156/175 (89.14%), Postives = 163/175 (93.14%), Query Frame = 0
Query: 1 MASRRGLGFGFGFHSKPNYIYPSSETAAAAVRRPESSVDSLFEFDEADIWTSGQTPPLES 60
MASRRGL FGFGFHSKPNYIYP+SE AVRRPESS D+LF+FDEADIWTS QTPP+ES
Sbjct: 1 MASRRGLAFGFGFHSKPNYIYPASE--PPAVRRPESSADNLFDFDEADIWTSAQTPPIES 60
Query: 61 RKIFPISKKLPKRSGATTAAEKPVKASSSLPVNIPDWSKILQSDQSKHGRREAAEEDFDD 120
RKIFPISKKLPKRS T AAEK VKASSSLPVNIPDWSKILQSD+SKHGRREAAEEDFDD
Sbjct: 61 RKIFPISKKLPKRS--TAAAEKTVKASSSLPVNIPDWSKILQSDKSKHGRREAAEEDFDD 120
Query: 121 SDDDDDDLRRAPPHEYLARRRGDSFSVHEGIGRTLKGRDLRMVRNAIWEKTGFED 176
SDDDDDD+ RAPPHEYLARRRG+SFSVHEGIGRTLKGRDLRMVRNAIWEKTGFED
Sbjct: 121 SDDDDDDMWRAPPHEYLARRRGESFSVHEGIGRTLKGRDLRMVRNAIWEKTGFED 171
BLAST of Lag0027063 vs. NCBI nr
Match: XP_023005909.1 (uncharacterized protein LOC111498772 [Cucurbita maxima]) HSP 1 Score: 304.3 bits (778), Expect = 6.8e-79 Identity = 155/175 (88.57%), Postives = 162/175 (92.57%), Query Frame = 0
Query: 1 MASRRGLGFGFGFHSKPNYIYPSSETAAAAVRRPESSVDSLFEFDEADIWTSGQTPPLES 60
MASRRGL FGFGFHSKPNYIYP+SE AV RPESS D+LF+F+EADIWTS QTPP+ES
Sbjct: 1 MASRRGLAFGFGFHSKPNYIYPASE--PPAVLRPESSADNLFDFNEADIWTSAQTPPIES 60
Query: 61 RKIFPISKKLPKRSGATTAAEKPVKASSSLPVNIPDWSKILQSDQSKHGRREAAEEDFDD 120
RKIFPISKKLPKRS A AAEK VKASSSLPVNIPDWSKILQSDQSKHGRREAAEEDFDD
Sbjct: 61 RKIFPISKKLPKRSSA--AAEKTVKASSSLPVNIPDWSKILQSDQSKHGRREAAEEDFDD 120
Query: 121 SDDDDDDLRRAPPHEYLARRRGDSFSVHEGIGRTLKGRDLRMVRNAIWEKTGFED 176
SDDDDDD+ RAPPHEYLARRRG+SFSVHEGIGRTLKGRDLRMVRNAIWEKTGFED
Sbjct: 121 SDDDDDDMWRAPPHEYLARRRGESFSVHEGIGRTLKGRDLRMVRNAIWEKTGFED 171
BLAST of Lag0027063 vs. NCBI nr
Match: XP_022940559.1 (uncharacterized protein LOC111446095 [Cucurbita moschata]) HSP 1 Score: 301.6 bits (771), Expect = 4.4e-78 Identity = 154/175 (88.00%), Postives = 161/175 (92.00%), Query Frame = 0
Query: 1 MASRRGLGFGFGFHSKPNYIYPSSETAAAAVRRPESSVDSLFEFDEADIWTSGQTPPLES 60
MASRRGL FGFGFHSKPNYIYP+SE AVRRPESS D+LF+F+EADIWTS QT P+ES
Sbjct: 1 MASRRGLAFGFGFHSKPNYIYPASE--PPAVRRPESSADNLFDFEEADIWTSAQTSPIES 60
Query: 61 RKIFPISKKLPKRSGATTAAEKPVKASSSLPVNIPDWSKILQSDQSKHGRREAAEEDFDD 120
RKIFPISKKLPKRS A AAEK VKASSSLPVNIPDWSKILQSDQSKHG REAAEEDFDD
Sbjct: 61 RKIFPISKKLPKRSSA--AAEKTVKASSSLPVNIPDWSKILQSDQSKHGPREAAEEDFDD 120
Query: 121 SDDDDDDLRRAPPHEYLARRRGDSFSVHEGIGRTLKGRDLRMVRNAIWEKTGFED 176
SDDDDDD+ RAPPHEYLARRRG+SFSVHEGIGRTLKGRDLRMVRNAIWEKTGFED
Sbjct: 121 SDDDDDDMWRAPPHEYLARRRGESFSVHEGIGRTLKGRDLRMVRNAIWEKTGFED 171
BLAST of Lag0027063 vs. NCBI nr
Match: XP_023539980.1 (uncharacterized protein LOC111800495 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 300.8 bits (769), Expect = 7.5e-78 Identity = 154/175 (88.00%), Postives = 160/175 (91.43%), Query Frame = 0
Query: 1 MASRRGLGFGFGFHSKPNYIYPSSETAAAAVRRPESSVDSLFEFDEADIWTSGQTPPLES 60
MASRRGL FGFGFHSKPNYIYP+SE AVR ES D+LF+FDEADIWTS QTPP+ES
Sbjct: 1 MASRRGLAFGFGFHSKPNYIYPASE--PPAVRGTESYADNLFDFDEADIWTSAQTPPIES 60
Query: 61 RKIFPISKKLPKRSGATTAAEKPVKASSSLPVNIPDWSKILQSDQSKHGRREAAEEDFDD 120
RKIFPISKKLPKRS A AAEK VKASSSLPVNIPDWSKILQSDQSKHGRREAAEEDFDD
Sbjct: 61 RKIFPISKKLPKRSSA--AAEKTVKASSSLPVNIPDWSKILQSDQSKHGRREAAEEDFDD 120
Query: 121 SDDDDDDLRRAPPHEYLARRRGDSFSVHEGIGRTLKGRDLRMVRNAIWEKTGFED 176
SDDDDDD+ RAPPHEYLARRRG+SFSVHEGIGRTLKGRDLRMVRNAIWEKTGFED
Sbjct: 121 SDDDDDDMWRAPPHEYLARRRGESFSVHEGIGRTLKGRDLRMVRNAIWEKTGFED 171
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_038905106.1 | 1.3e-82 | 89.71 | uncharacterized protein LOC120091239 [Benincasa hispida] | [more] |
| KAG7028018.1 | 6.2e-80 | 89.14 | hypothetical protein SDJN02_09198, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| XP_023005909.1 | 6.8e-79 | 88.57 | uncharacterized protein LOC111498772 [Cucurbita maxima] | [more] |
| XP_022940559.1 | 4.4e-78 | 88.00 | uncharacterized protein LOC111446095 [Cucurbita moschata] | [more] |
| XP_023539980.1 | 7.5e-78 | 88.00 | uncharacterized protein LOC111800495 [Cucurbita pepo subsp. pepo] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR007608 | Senescence regulator S40 | PFAM | PF04520 | Senescence_reg | coord: 51..175
e-value: 1.2E-36
score: 127.0 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 127..142 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 51..142 |
| None | No IPR available | PANTHER | PTHR46525 | EMB|CAB72159.1 | coord: 1..175 |
| None | No IPR available | PANTHER | PTHR46525:SF6 | ARABIDOPSIS THALIANA GENOMIC DNA, CHROMOSOME 5, P1 CLONE:MOK16 | coord: 1..175 |
Relationships
The following mRNA feature(s) are a part of this gene:
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