Lag0027062 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0027062
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr10: 44741706 .. 44743551 (-)
RNA-Seq Expression	Lag0027062
Synteny	Lag0027062

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGGAGATCGGAAGCGAATCTTGGTAGGTTTGGCGGTGGCGATGTTCTTAGGATTGGTGGTGTACACGAGGCTTTGGACCATCGACTACTCCATGTCTTCCGATGAAGCCTTACTGCTCAGGTCTGGATTTTCCTCTTTTGCTTCGTTTTTCTCATTTTGTAGATTCTTGTTTCGGAGATTTTTATGAAATTTTAGGAAGTGGTACCGATTTCTTGTAATCTACGTAATGCAAGGTTATCGGTTAGATTTAAATTGCTCGTTTATGGATCGTTTAGGAGGCAGTTCGACCTTGCGAATCGGGAGGCAATGGATGAATCTGCGGAGTGGCGTCGTATGTATGACCACGAACTAGATAGAGCCAATAGATGTAACAATGAGCTAAACAAGGTCAGTATCTCTAGGGTTAAGTTACCATGAAGATTGATGAATTCCATGGAGTTTTTCCCTCATTGCGTTGAAATTATATTTTTGCATTGATCAAGCGGGATGATTTTGTAATGATTTGTGGAATTACTTTTCTGAAACCGGTTGTTTGATGGGCGTATGCTTGAATTTTGTTTATCCTTGTTGTTGCTGCTCCTACATTTTACGGCATGCCAATCAAAAGATTCAAAACGTCTTGCATTGTCAACAAGCAACAAACTTGTTATACGCAGAATACGAGAAATGCTTTTGTATTGAACAATTAACTCTCTGTTCTTGGCAGCATCATCATGAACGATGAAATCCTTCCCATACTGTTCATCTCATACTCGTATTATGAGGCTGTTTTAAGTAACCGATTCCAGTAATTAGCTTAAGCTTTTGGGTTTAAGATAATTTAACATAGTACTAGAGCATGAAGTCTTGTATTCAAATCTTGACATAGGATTTCCCTGTTAATATTGATAGTCACTTGTTGAATCTCATACTAATTTAGTAATTTTGAAATCTTCAAGTGAGAGGAGTGTAAAAATGAGAATGCGAAAGATTAAATATATCTCAATCCATTAATTTAAACTTTTGAATTTAGTAATGATTTAACTAACTCCATCTCCATGTGGTAGAAAGTTTGTTGTATGTCTTTGTTGACCACTGATTGAGTACAATTCTACTTGGCAGCTTAAGGAATCTTTTGAGAAGGTCGGGGATGCTGCTAGAATCAATCAGAGGTTGACAAATATTCAAGAGGTAACACCCCGATATAACTATATAGTTGTTGAATTTCGAGTATGTTAACTCATCAGTAAGTTCTTTCTTCAATCTCTCCTTAAAAAAATGGAAATGACTTGAGAAGACCTGCATATCTGATACCACACCACATGCATGTAAAGAAATACTATCAACTTGTCTCCACTCCAGAACTAAAAGTTTGTCCTGTATGTATGTTCATCATGGTTTCCCCCTTAAACATGTCTGAAGTTTTCAGGAAAACTTTTCTCTTCGTAAACAAGTGGATGCCTTACAGCGAAGGCTAGAGGCCGAGAAGTCGAGGTGTGGCTCTCAATAGAGCCAGTCAACAAACACTGAAAAGAATGCTGATATCGAATTCAAATTGGAAGACATCTATATAATAGCTGAGTTTGCTGGTCATGGCTTGTGATGGGAAGTGCTGAACCAAATGATAAACTAATGAAGATCACTGTGGGGTATGTTTTTGTAGGTTTCTCTTTGTTGTCTGCAAACAATGAAAGGGTTTGTCTGGACTTTGTAGGAGAGGAGATTCTGCAATCTCCATGAGACCAGTGAGTTTCTCTTGCTCTTACACAACAAAGCTCAGGGGAAGGCTTCTGTTTATTCCCATATGTCATGGATGGATTGTTAGACAATCAAGTTTCAGCTGGCATGGGAATTTTTGGTAG

mRNA sequence

ATGGGGGGAGATCGGAAGCGAATCTTGGTAGGTTTGGCGGTGGCGATGTTCTTAGGATTGGTGGTGTACACGAGGCTTTGGACCATCGACTACTCCATGTCTTCCGATGAAGCCTTACTGCTCAGGAGGCAGTTCGACCTTGCGAATCGGGAGGCAATGGATGAATCTGCGGAGTGGCGTCGTATGTATGACCACGAACTAGATAGAGCCAATAGATGTAACAATGAGCTAAACAAGCTTAAGGAATCTTTTGAGAAGGTCGGGGATGCTGCTAGAATCAATCAGAGGTTGACAAATATTCAAGAGGAAAACTTTTCTCTTCGTAAACAAGTGGATGCCTTACAGCGAAGGCTAGAGGCCGAGAAGTCGAGGAGAGGAGATTCTGCAATCTCCATGAGACCAGTGAGTTTCTCTTGCTCTTACACAACAAAGCTCAGGGGAAGGCTTCTGTTTATTCCCATATGTCATGGATGGATTGTTAGACAATCAAGTTTCAGCTGGCATGGGAATTTTTGGTAG

Coding sequence (CDS)

ATGGGGGGAGATCGGAAGCGAATCTTGGTAGGTTTGGCGGTGGCGATGTTCTTAGGATTGGTGGTGTACACGAGGCTTTGGACCATCGACTACTCCATGTCTTCCGATGAAGCCTTACTGCTCAGGAGGCAGTTCGACCTTGCGAATCGGGAGGCAATGGATGAATCTGCGGAGTGGCGTCGTATGTATGACCACGAACTAGATAGAGCCAATAGATGTAACAATGAGCTAAACAAGCTTAAGGAATCTTTTGAGAAGGTCGGGGATGCTGCTAGAATCAATCAGAGGTTGACAAATATTCAAGAGGAAAACTTTTCTCTTCGTAAACAAGTGGATGCCTTACAGCGAAGGCTAGAGGCCGAGAAGTCGAGGAGAGGAGATTCTGCAATCTCCATGAGACCAGTGAGTTTCTCTTGCTCTTACACAACAAAGCTCAGGGGAAGGCTTCTGTTTATTCCCATATGTCATGGATGGATTGTTAGACAATCAAGTTTCAGCTGGCATGGGAATTTTTGGTAG

Protein sequence

MGGDRKRILVGLAVAMFLGLVVYTRLWTIDYSMSSDEALLLRRQFDLANREAMDESAEWRRMYDHELDRANRCNNELNKLKESFEKVGDAARINQRLTNIQEENFSLRKQVDALQRRLEAEKSRRGDSAISMRPVSFSCSYTTKLRGRLLFIPICHGWIVRQSSFSWHGNFW

Homology

[Close]

BLAST of Lag0027062 vs. NCBI nr
Match: XP_038903114.1 (uncharacterized protein LOC120089790 [Benincasa hispida])

HSP 1 Score: 211.1 bits (536), Expect = 7.7e-51
Identity = 110/126 (87.30%), Postives = 116/126 (92.06%), Query Frame = 0


Query: 1   MGGDRKRILVGLAVAMFLGLVVYTRLWTIDYSMSSDEALLLRRQFDLANREAMDESAEWR 60
           MG DRKRIL+GL VAMFLGLVVY +LWTIDYSMSSDEA LLRRQFDLANREAMDESAEWR
Sbjct: 1   MGDDRKRILIGLTVAMFLGLVVYMKLWTIDYSMSSDEAELLRRQFDLANREAMDESAEWR 60

Query: 61  RMYDHELDRANRCNNELNKLKESFEKVGDAARINQRLTNIQEENFSLRKQVDALQRRLEA 120
           RMYD ELDRANRCN +LNKLKESFEKVGDAARINQ+LT +QEENF+LR QVDALQRRLEA
Sbjct: 61  RMYDRELDRANRCNIDLNKLKESFEKVGDAARINQKLTKMQEENFALRTQVDALQRRLEA 120

Query: 121 EKSRRG 127
           EK R G
Sbjct: 121 EKLRCG 126

[Close]

BLAST of Lag0027062 vs. NCBI nr
Match: XP_008442682.1 (PREDICTED: uncharacterized protein LOC103486481 [Cucumis melo] >XP_008442683.1 PREDICTED: uncharacterized protein LOC103486481 [Cucumis melo] >TYK25130.1 uncharacterized protein E5676_scaffold352G002550 [Cucumis melo var. makuwa])

HSP 1 Score: 209.5 bits (532), Expect = 2.2e-50
Identity = 107/126 (84.92%), Postives = 118/126 (93.65%), Query Frame = 0


Query: 1   MGGDRKRILVGLAVAMFLGLVVYTRLWTIDYSMSSDEALLLRRQFDLANREAMDESAEWR 60
           MGGDRKRIL+GL VAMF+GLVVY +LWTIDYSMS+DEA LLRRQFDLANREAMDESAEWR
Sbjct: 1   MGGDRKRILIGLTVAMFVGLVVYMKLWTIDYSMSTDEAELLRRQFDLANREAMDESAEWR 60

Query: 61  RMYDHELDRANRCNNELNKLKESFEKVGDAARINQRLTNIQEENFSLRKQVDALQRRLEA 120
           RMYD+ELDRANRC +ELN+LK SFEKVGDAARIN++LT +QEENF+LR QVDALQRRLEA
Sbjct: 61  RMYDNELDRANRCKSELNQLKASFEKVGDAARINEKLTKMQEENFALRTQVDALQRRLEA 120

Query: 121 EKSRRG 127
           EKSR G
Sbjct: 121 EKSRCG 126

[Close]

BLAST of Lag0027062 vs. NCBI nr
Match: XP_022946927.1 (uncharacterized protein LOC111450864 [Cucurbita moschata] >KAG7028019.1 hypothetical protein SDJN02_09199 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 207.6 bits (527), Expect = 8.5e-50
Identity = 108/126 (85.71%), Postives = 116/126 (92.06%), Query Frame = 0


Query: 1   MGGDRKRILVGLAVAMFLGLVVYTRLWTIDYSMSSDEALLLRRQFDLANREAMDESAEWR 60
           MG +RK+ILVGLA AMFLGLVVY RLWTIDYSMS+DEA LLRRQFDLANREAMDESAEWR
Sbjct: 1   MGRNRKQILVGLAAAMFLGLVVYMRLWTIDYSMSTDEAELLRRQFDLANREAMDESAEWR 60

Query: 61  RMYDHELDRANRCNNELNKLKESFEKVGDAARINQRLTNIQEENFSLRKQVDALQRRLEA 120
           RMYDHELDRA  CN+ELNKLKESFEKVGD ARINQ+LTN+QEEN +LRK+VDALQ RLEA
Sbjct: 61  RMYDHELDRAKSCNSELNKLKESFEKVGDVARINQKLTNLQEENAALRKEVDALQLRLEA 120

Query: 121 EKSRRG 127
           EKSR G
Sbjct: 121 EKSRCG 126

[Close]

BLAST of Lag0027062 vs. NCBI nr
Match: KAG6596473.1 (BTB/POZ domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 206.5 bits (524), Expect = 1.9e-49
Identity = 107/123 (86.99%), Postives = 115/123 (93.50%), Query Frame = 0


Query: 1   MGGDRKRILVGLAVAMFLGLVVYTRLWTIDYSMSSDEALLLRRQFDLANREAMDESAEWR 60
           MG +RK+ILVGLAVAMFLGLVVY RLWTIDYSMS+DEA LLRRQFDLANREAMDESAEWR
Sbjct: 188 MGRNRKQILVGLAVAMFLGLVVYMRLWTIDYSMSTDEAELLRRQFDLANREAMDESAEWR 247

Query: 61  RMYDHELDRANRCNNELNKLKESFEKVGDAARINQRLTNIQEENFSLRKQVDALQRRLEA 120
           RMYDHELDRA  CN+ELNKLKESFEKVGD ARINQ+LTN+QEEN +LRK+VDALQ RLEA
Sbjct: 248 RMYDHELDRAKSCNSELNKLKESFEKVGDVARINQKLTNLQEENAALRKEVDALQLRLEA 307

Query: 121 EKS 124
           EKS
Sbjct: 308 EKS 310

[Close]

BLAST of Lag0027062 vs. NCBI nr
Match: XP_004137824.1 (uncharacterized protein LOC101217573 isoform X2 [Cucumis sativus] >XP_031737689.1 uncharacterized protein LOC101217573 isoform X2 [Cucumis sativus] >KGN58960.1 hypothetical protein Csa_001294 [Cucumis sativus])

HSP 1 Score: 206.1 bits (523), Expect = 2.5e-49
Identity = 106/126 (84.13%), Postives = 116/126 (92.06%), Query Frame = 0


Query: 1   MGGDRKRILVGLAVAMFLGLVVYTRLWTIDYSMSSDEALLLRRQFDLANREAMDESAEWR 60
           MG DRKRIL+GL VAMFLGLVVY +LWTIDYSMS+DEA LLRRQFDLANREAMDESAEWR
Sbjct: 1   MGSDRKRILIGLTVAMFLGLVVYMKLWTIDYSMSADEAELLRRQFDLANREAMDESAEWR 60

Query: 61  RMYDHELDRANRCNNELNKLKESFEKVGDAARINQRLTNIQEENFSLRKQVDALQRRLEA 120
           RMYD+ELDRANRC +ELN+LK SFEKVGDAA+IN++LT  QEENF+LR QVDALQRRLEA
Sbjct: 61  RMYDNELDRANRCKSELNQLKVSFEKVGDAAKINEKLTKTQEENFALRTQVDALQRRLEA 120

Query: 121 EKSRRG 127
           EKSR G
Sbjct: 121 EKSRCG 126

The following BLAST results are available for this feature:

BLAST of Lag0027062 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903114.1	7.7e-51	87.30	uncharacterized protein LOC120089790 [Benincasa hispida]	[more]
XP_008442682.1	2.2e-50	84.92	PREDICTED: uncharacterized protein LOC103486481 [Cucumis melo] >XP_008442683.1 P...	[more]
XP_022946927.1	8.5e-50	85.71	uncharacterized protein LOC111450864 [Cucurbita moschata] >KAG7028019.1 hypothet...	[more]
KAG6596473.1	1.9e-49	86.99	BTB/POZ domain-containing protein, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_004137824.1	2.5e-49	84.13	uncharacterized protein LOC101217573 isoform X2 [Cucumis sativus] >XP_031737689....	[more]

BLAST of Lag0027062 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 90..124
None	No IPR available	COILS	Coil	Coil	coord: 63..83
None	No IPR available	PANTHER	PTHR37215	ACYL-COA-BINDING DOMAIN PROTEIN	coord: 4..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0027062.1	Lag0027062.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane