Lag0026969 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0026969
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionPlant/T22K18-16 protein, putative
Locationchr10: 43839122 .. 43839553 (-)
RNA-Seq ExpressionLag0026969
SyntenyLag0026969
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCCGATCGACGACAAGAAGGACAAAGTGACGATCCGAGCGGTGAGCCGCGACGAGGAAGGGAAAAAGCGAGTCGAAAAGACCGAGATCGACACTCACAACATCGACACCATCAAGTACGTCGAGAAGAAGCTCATCGACAAGGGAGTTCAGCGCCTCGACCGCCATCCGGTCCACGGCCGTGCCGGAATTGCCCAGCCGCCGCCGAAGTCCGGCCGCGGCGGGAAGTTCACTTGGGAGGGACCGGGCGATCGCATCGAGAACGAGCTCTCGCCGGCGCCGGCGGCTATAGATGAGAAGGATCCTAACTACGTGGATGAAGAGAAGGAGGAGGAGGTCGCCGGAGAAGTGGAGGTGCCGAAGGCGGCGGCGGCGGCGAGAGAGGGAGTTTCGAGAGTGGAGGTGGATCCGCAGATTCAATTGCAATGA

mRNA sequence

ATGAAGCCGATCGACGACAAGAAGGACAAAGTGACGATCCGAGCGGTGAGCCGCGACGAGGAAGGGAAAAAGCGAGTCGAAAAGACCGAGATCGACACTCACAACATCGACACCATCAAGTACGTCGAGAAGAAGCTCATCGACAAGGGAGTTCAGCGCCTCGACCGCCATCCGGTCCACGGCCGTGCCGGAATTGCCCAGCCGCCGCCGAAGTCCGGCCGCGGCGGGAAGTTCACTTGGGAGGGACCGGGCGATCGCATCGAGAACGAGCTCTCGCCGGCGCCGGCGGCTATAGATGAGAAGGATCCTAACTACGTGGATGAAGAGAAGGAGGAGGAGGTCGCCGGAGAAGTGGAGGTGCCGAAGGCGGCGGCGGCGGCGAGAGAGGGAGTTTCGAGAGTGGAGGTGGATCCGCAGATTCAATTGCAATGA

Coding sequence (CDS)

ATGAAGCCGATCGACGACAAGAAGGACAAAGTGACGATCCGAGCGGTGAGCCGCGACGAGGAAGGGAAAAAGCGAGTCGAAAAGACCGAGATCGACACTCACAACATCGACACCATCAAGTACGTCGAGAAGAAGCTCATCGACAAGGGAGTTCAGCGCCTCGACCGCCATCCGGTCCACGGCCGTGCCGGAATTGCCCAGCCGCCGCCGAAGTCCGGCCGCGGCGGGAAGTTCACTTGGGAGGGACCGGGCGATCGCATCGAGAACGAGCTCTCGCCGGCGCCGGCGGCTATAGATGAGAAGGATCCTAACTACGTGGATGAAGAGAAGGAGGAGGAGGTCGCCGGAGAAGTGGAGGTGCCGAAGGCGGCGGCGGCGGCGAGAGAGGGAGTTTCGAGAGTGGAGGTGGATCCGCAGATTCAATTGCAATGA

Protein sequence

MKPIDDKKDKVTIRAVSRDEEGKKRVEKTEIDTHNIDTIKYVEKKLIDKGVQRLDRHPVHGRAGIAQPPPKSGRGGKFTWEGPGDRIENELSPAPAAIDEKDPNYVDEEKEEEVAGEVEVPKAAAAAREGVSRVEVDPQIQLQ
Homology
BLAST of Lag0026969 vs. NCBI nr
Match: XP_004137866.1 (uncharacterized protein LOC101207081 [Cucumis sativus] >KGN59049.1 hypothetical protein Csa_002138 [Cucumis sativus])

HSP 1 Score: 238.4 bits (607), Expect = 3.8e-59
Identity = 125/147 (85.03%), Postives = 132/147 (89.80%), Query Frame = 0

Query: 1   MKPIDDKKDKVTIRAVSRDEEGKKRVEKTEIDTHNIDTIKYVEKKLIDKGVQRLDRHPVH 60
           MKPIDDKKDKVTIRAVSRDEEGKK VEK EI++HNIDTIKY+EKKLIDKG+QRL+RHPVH
Sbjct: 1   MKPIDDKKDKVTIRAVSRDEEGKKHVEKAEIESHNIDTIKYIEKKLIDKGIQRLERHPVH 60

Query: 61  GRAGIAQPPPKSGRGGKFTWEGPGDRIENELSPAPAAIDEKDPNYVDEEKEEEVA----G 120
           G  GI QPPPKSGRGGKFTWEGPGD IENELSPAP AIDEKDPNYVDEE+EEEVA    G
Sbjct: 61  GHTGIGQPPPKSGRGGKFTWEGPGDAIENELSPAPPAIDEKDPNYVDEEEEEEVAGLVVG 120

Query: 121 EVEVPKAAAAAREGVSRVEVDPQIQLQ 144
           EVEVP   AAA EGVSRVEVDPQ+QLQ
Sbjct: 121 EVEVP---AAAPEGVSRVEVDPQLQLQ 144

BLAST of Lag0026969 vs. NCBI nr
Match: XP_008442790.1 (PREDICTED: uncharacterized protein LOC103486565 [Cucumis melo] >KAA0043928.1 uncharacterized protein E6C27_scaffold236G002680 [Cucumis melo var. makuwa] >TYK25211.1 uncharacterized protein E5676_scaffold352G003410 [Cucumis melo var. makuwa])

HSP 1 Score: 233.8 bits (595), Expect = 9.2e-58
Identity = 123/149 (82.55%), Postives = 131/149 (87.92%), Query Frame = 0

Query: 1   MKPIDDKKDKVTIRAVSRDEEGKKRVEKTEIDTHNIDTIKYVEKKLIDKGVQRLDRHPVH 60
           MKPID+KKDKVTIRAV+RDEEGKK +EK EI++HNIDTIKY+EKKLIDKGVQRL+RHPVH
Sbjct: 1   MKPIDEKKDKVTIRAVTRDEEGKKHIEKAEIESHNIDTIKYIEKKLIDKGVQRLERHPVH 60

Query: 61  GRAGIAQPPPKSGRGGKFTWEGPGDRIENELSPAPAAIDEKDPNYVDEEKEEE------V 120
           G  GIAQPPPKSGRGGKFTWEGPGD IENELSPAP AIDEKDPNYVDE KEEE      V
Sbjct: 61  GHTGIAQPPPKSGRGGKFTWEGPGDAIENELSPAPPAIDEKDPNYVDEVKEEEEEVAGLV 120

Query: 121 AGEVEVPKAAAAAREGVSRVEVDPQIQLQ 144
            GEVEVP   AAA EGVSRVEVDPQ+QLQ
Sbjct: 121 VGEVEVP---AAAPEGVSRVEVDPQLQLQ 146

BLAST of Lag0026969 vs. NCBI nr
Match: XP_023528786.1 (uncharacterized protein LOC111791618 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 231.5 bits (589), Expect = 4.6e-57
Identity = 125/147 (85.03%), Postives = 130/147 (88.44%), Query Frame = 0

Query: 1   MKPIDDKKDKVTIRAVSRDEEGKKRVEKTEIDTHNIDTIKYVEKKLIDKGVQRLDRHPVH 60
           MKPI+DKK+KVTIRAVSRDEEGKKRVEK EIDT NIDTIKYVEKKLIDKGVQRLDRHPVH
Sbjct: 1   MKPINDKKEKVTIRAVSRDEEGKKRVEKAEIDTRNIDTIKYVEKKLIDKGVQRLDRHPVH 60

Query: 61  GRAGIAQPPPKSGRGGKFTWEGPGDRIENELSPAPAAIDEKDPNYVDEEKEEEVA----G 120
            R GIAQPPPKSG GGKFTWEGP D IENELSPAPAAIDE DPNYVDE KEEEVA    G
Sbjct: 61  TRTGIAQPPPKSGHGGKFTWEGPSDAIENELSPAPAAIDENDPNYVDEVKEEEVAGLVVG 120

Query: 121 EVEVPKAAAAAREGVSRVEVDPQIQLQ 144
           EVEV KAAA   EGV+RVEVDP++QLQ
Sbjct: 121 EVEVAKAAAVT-EGVARVEVDPRLQLQ 146

BLAST of Lag0026969 vs. NCBI nr
Match: XP_038904411.1 (uncharacterized protein LOC120090774 [Benincasa hispida])

HSP 1 Score: 230.7 bits (587), Expect = 7.8e-57
Identity = 124/148 (83.78%), Postives = 132/148 (89.19%), Query Frame = 0

Query: 1   MKPIDDKKDKVTIRAVSRDEEGKKRVEKTEIDTHNIDTIKYVEKKLIDKGVQRLDRHPVH 60
           MKPID+KKDKVTIRAV+R+EEGKK VEK EI++HNIDTIKY+EKKLIDKGVQRL+RHPVH
Sbjct: 1   MKPIDEKKDKVTIRAVTRNEEGKKHVEKAEIESHNIDTIKYIEKKLIDKGVQRLERHPVH 60

Query: 61  GRAGIAQPPPKSGRGGKFTWEGPGDRIENELSPAPAAIDEKDPNYVDEEK-EEEVAG--- 120
           G  GIAQPPPKSGRGGKFTWEGPGD IENELSPAPAAIDEKDPNYVDE K EEEVAG   
Sbjct: 61  GHTGIAQPPPKSGRGGKFTWEGPGDAIENELSPAPAAIDEKDPNYVDEVKEEEEVAGLVV 120

Query: 121 -EVEVPKAAAAAREGVSRVEVDPQIQLQ 144
            EVEVP   AA  EGVSRVEVDPQ+QLQ
Sbjct: 121 EEVEVP---AAVAEGVSRVEVDPQLQLQ 145

BLAST of Lag0026969 vs. NCBI nr
Match: XP_022935160.1 (uncharacterized protein LOC111442115 [Cucurbita moschata] >KAG6580661.1 hypothetical protein SDJN03_20663, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 230.3 bits (586), Expect = 1.0e-56
Identity = 125/147 (85.03%), Postives = 129/147 (87.76%), Query Frame = 0

Query: 1   MKPIDDKKDKVTIRAVSRDEEGKKRVEKTEIDTHNIDTIKYVEKKLIDKGVQRLDRHPVH 60
           MKPI DKK+KVTIRAVSRDEEGKKRVEK EIDT NIDTIKYVEKKLIDKGVQRLDRHPVH
Sbjct: 1   MKPIADKKEKVTIRAVSRDEEGKKRVEKAEIDTRNIDTIKYVEKKLIDKGVQRLDRHPVH 60

Query: 61  GRAGIAQPPPKSGRGGKFTWEGPGDRIENELSPAPAAIDEKDPNYVDEEKEEEVA----G 120
            R GIAQPPPKSG GGKFTWEGP D IENELSPAPAAIDE DPNYVDE KEEEVA    G
Sbjct: 61  TRTGIAQPPPKSGHGGKFTWEGPSDAIENELSPAPAAIDENDPNYVDEVKEEEVAGLVVG 120

Query: 121 EVEVPKAAAAAREGVSRVEVDPQIQLQ 144
           EVEV KAAA   EGV+RVEVDP++QLQ
Sbjct: 121 EVEVAKAAAVT-EGVARVEVDPRLQLQ 146

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004137866.13.8e-5985.03uncharacterized protein LOC101207081 [Cucumis sativus] >KGN59049.1 hypothetical ... [more]
XP_008442790.19.2e-5882.55PREDICTED: uncharacterized protein LOC103486565 [Cucumis melo] >KAA0043928.1 unc... [more]
XP_023528786.14.6e-5785.03uncharacterized protein LOC111791618 [Cucurbita pepo subsp. pepo][more]
XP_038904411.17.8e-5783.78uncharacterized protein LOC120090774 [Benincasa hispida][more]
XP_022935160.11.0e-5685.03uncharacterized protein LOC111442115 [Cucurbita moschata] >KAG6580661.1 hypothet... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..117

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0026969.1Lag0026969.1mRNA