Lag0026916 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0026916
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionSolute carrier family 35 member F2-like
Locationchr10: 43232876 .. 43233229 (-)
RNA-Seq ExpressionLag0026916
SyntenyLag0026916
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACCGGCGGAGCTCCGGTCCAAATCGAAGAAGACGACGAGCTCTTTGAGATCGATCTCGAGGCCGTAAACAGCATTATTCCTCCGCCGCATTTCTCCACCGACGATACTTACGGCTTCTTCACGGCCACCGGCGGCGCCGCGCTTCTCGCCAACTGTCTGCTGCCGATCTCCGACTTGTCCAACGCCGTTCCGATGGCCGATTCCGGCGAATACGAGATGTTTCTGTTTGCGTCGCCGCCGGAGCCGATGCGTCTGGAGAAGCTTCTTCAATTGACCAGAGGTTTCGGCCTTCGTCAGGCTTTGATCGATCGATCGATCGGAGATGAAGATAATCGGAGGATAATTTGA

mRNA sequence

ATGGCCACCGGCGGAGCTCCGGTCCAAATCGAAGAAGACGACGAGCTCTTTGAGATCGATCTCGAGGCCGTAAACAGCATTATTCCTCCGCCGCATTTCTCCACCGACGATACTTACGGCTTCTTCACGGCCACCGGCGGCGCCGCGCTTCTCGCCAACTGTCTGCTGCCGATCTCCGACTTGTCCAACGCCGTTCCGATGGCCGATTCCGGCGAATACGAGATGTTTCTGTTTGCGTCGCCGCCGGAGCCGATGCGTCTGGAGAAGCTTCTTCAATTGACCAGAGGTTTCGGCCTTCGTCAGGCTTTGATCGATCGATCGATCGGAGATGAAGATAATCGGAGGATAATTTGA

Coding sequence (CDS)

ATGGCCACCGGCGGAGCTCCGGTCCAAATCGAAGAAGACGACGAGCTCTTTGAGATCGATCTCGAGGCCGTAAACAGCATTATTCCTCCGCCGCATTTCTCCACCGACGATACTTACGGCTTCTTCACGGCCACCGGCGGCGCCGCGCTTCTCGCCAACTGTCTGCTGCCGATCTCCGACTTGTCCAACGCCGTTCCGATGGCCGATTCCGGCGAATACGAGATGTTTCTGTTTGCGTCGCCGCCGGAGCCGATGCGTCTGGAGAAGCTTCTTCAATTGACCAGAGGTTTCGGCCTTCGTCAGGCTTTGATCGATCGATCGATCGGAGATGAAGATAATCGGAGGATAATTTGA

Protein sequence

MATGGAPVQIEEDDELFEIDLEAVNSIIPPPHFSTDDTYGFFTATGGAALLANCLLPISDLSNAVPMADSGEYEMFLFASPPEPMRLEKLLQLTRGFGLRQALIDRSIGDEDNRRII
Homology
[Close]
BLAST of Lag0026916 vs. NCBI nr
Match: XP_022935370.1 (uncharacterized protein LOC111442274 [Cucurbita moschata])

HSP 1 Score: 172.9 bits (437), Expect = 1.6e-39
Identity = 87/107 (81.31%), Postives = 94/107 (87.85%), Query Frame = 0 

Query: 1   MATGGAPVQIEEDDELFEIDLEAVNSIIPPPHFSTDDTYGFFTATGGAALLANCLLPISD 60
           MA+ G PV+IEEDDELFEIDLEAVNSII P HF  +DTYGFFTATGGAALLANCLLPISD
Sbjct: 16  MASSGVPVEIEEDDELFEIDLEAVNSIISPRHF-CEDTYGFFTATGGAALLANCLLPISD 75

Query: 61  LSNAVPMADSGEYEMFLFASPPEPMRLEKLLQLTRGFGLRQALIDRS 108
           LSNAVPMADS ++EMF FA+PPEP RLEK  QL  GFGLRQALI+RS
Sbjct: 76  LSNAVPMADSADFEMFPFATPPEPTRLEKAFQLPLGFGLRQALINRS 121

[Close]
BLAST of Lag0026916 vs. NCBI nr
Match: XP_023529132.1 (uncharacterized protein LOC111791865 [Cucurbita pepo subsp. pepo] >KAG6580690.1 hypothetical protein SDJN03_20692, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017447.1 hypothetical protein SDJN02_19312, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 172.9 bits (437), Expect = 1.6e-39
Identity = 87/107 (81.31%), Postives = 94/107 (87.85%), Query Frame = 0 

Query: 1   MATGGAPVQIEEDDELFEIDLEAVNSIIPPPHFSTDDTYGFFTATGGAALLANCLLPISD 60
           MA+ G PV+IEEDDELFEIDLEAVNSII P HF  +DTYGFFTATGGAALLANCLLPISD
Sbjct: 1   MASSGVPVEIEEDDELFEIDLEAVNSIISPRHF-CEDTYGFFTATGGAALLANCLLPISD 60

Query: 61  LSNAVPMADSGEYEMFLFASPPEPMRLEKLLQLTRGFGLRQALIDRS 108
           LSNAVPMADS ++EMF FA+PPEP RLEK  QL  GFGLRQALI+RS
Sbjct: 61  LSNAVPMADSADFEMFPFATPPEPTRLEKAFQLPLGFGLRQALINRS 106

[Close]
BLAST of Lag0026916 vs. NCBI nr
Match: XP_022983162.1 (uncharacterized protein LOC111481795 [Cucurbita maxima])

HSP 1 Score: 171.4 bits (433), Expect = 4.6e-39
Identity = 87/107 (81.31%), Postives = 94/107 (87.85%), Query Frame = 0 

Query: 1   MATGGAPVQIEEDDELFEIDLEAVNSIIPPPHFSTDDTYGFFTATGGAALLANCLLPISD 60
           MA+ G PV+IEEDDELFEIDLEAVNSII P HFS +DTY FFTATGGAALLANCLLPISD
Sbjct: 1   MASSGVPVEIEEDDELFEIDLEAVNSIISPRHFS-EDTYCFFTATGGAALLANCLLPISD 60

Query: 61  LSNAVPMADSGEYEMFLFASPPEPMRLEKLLQLTRGFGLRQALIDRS 108
           LSNAVPMADS ++EMF FA+PPEP RLEK  QL  GFGLRQALI+RS
Sbjct: 61  LSNAVPMADSADFEMFPFATPPEPTRLEKAFQLPLGFGLRQALINRS 106

[Close]
BLAST of Lag0026916 vs. NCBI nr
Match: XP_038906322.1 (uncharacterized protein LOC120092165 [Benincasa hispida])

HSP 1 Score: 144.8 bits (364), Expect = 4.6e-31
Identity = 73/106 (68.87%), Postives = 85/106 (80.19%), Query Frame = 0 

Query: 1   MATGGAPVQIEEDDELFEIDLEAVNSIIPPPHFSTDDTYGFFTATGGAALLANCLLPISD 60
           MA+ G PV+IEEDDELFEIDL+ VN+II P H S+DDTYGFF A GG  LLANCLLPI+D
Sbjct: 1   MASAGVPVEIEEDDELFEIDLDTVNNIISPSH-SSDDTYGFFRAAGGTTLLANCLLPITD 60

Query: 61  LSNAVPMADSGE-YEMFLFASPPEPMRLEKLLQLTRGFGLRQALID 106
           +SNA+PM DS +  EM LFA PP+P  LE +LQL  GFGLR+ALID
Sbjct: 61  VSNAIPMGDSNKCSEMSLFAMPPKPTHLETVLQLLLGFGLRRALID 105

[Close]
BLAST of Lag0026916 vs. NCBI nr
Match: KGN59122.1 (hypothetical protein Csa_001117 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 8.7e-30
Identity = 72/105 (68.57%), Postives = 83/105 (79.05%), Query Frame = 0 

Query: 1   MATGGAPVQIEEDDELFEIDLEAVNSIIPPPHFSTDDTYGFFTATGGAALLANCLLPISD 60
           MA+G  P++IEEDD+LFEIDLEAVNSII PP+FS DDT GFFT  G   LLANCLLPI+D
Sbjct: 1   MASGIDPLEIEEDDDLFEIDLEAVNSIISPPNFS-DDTCGFFTTAGDTTLLANCLLPITD 60

Query: 61  LSNAVPMADSGEYEMFLFASPPEPMRLEKLLQLTRGFGLRQALID 106
           +S+AVP+ DS E E+FLFA P EP  LEK LQL  GF L +ALID
Sbjct: 61  VSSAVPVGDSNECEIFLFAMPSEPTHLEKALQLPLGFELHRALID 104

The following BLAST results are available for this feature:
BLAST of Lag0026916 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022935370.11.6e-3981.31uncharacterized protein LOC111442274 [Cucurbita moschata][more]
XP_023529132.11.6e-3981.31uncharacterized protein LOC111791865 [Cucurbita pepo subsp. pepo] >KAG6580690.1 ... [more]
XP_022983162.14.6e-3981.31uncharacterized protein LOC111481795 [Cucurbita maxima][more]
XP_038906322.14.6e-3168.87uncharacterized protein LOC120092165 [Benincasa hispida][more]
KGN59122.18.7e-3068.57hypothetical protein Csa_001117 [Cucumis sativus][more]
BLAST of Lag0026916 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0026916.1Lag0026916.1mRNA