Lag0026862 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0026862
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	40S ribosomal protein S17-like
Location	chr10: 42645822 .. 42646241 (-)
RNA-Seq Expression	Lag0026862
Synteny	Lag0026862

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGACGCGTTCGCACCAAAACAGTGAAGAAATCTTCCCGTCAAGTCATCGAGCGCTACTATTCGCGCATGACCCTCGACTTCCATACGAACAAGAAGATCCTCGAAGAGGTCGCCATTATCCCTTCCAAGAGACTGCGAAACAAGATCGCCGGATGCTCCACTCACCTCATGAAGCGGATCCAGAAGGGACCGGTTCGCGGCATCTCTCTGAAGCTTCAAGAGGAAGAGCGCGAGCGCCGCATGGACTTCGTTCCCGACGTGTCCGCCATTAAAACCGATCAAATCGAGGTCGACAAGGAGACTCTCGACATGCTTTCTACTCTTGGAATGAACGATATTCCGGGGATTGTTCAGGTCGATCCGACTGTGCCGCAGCAGGTTGGATTTGGATTGGCCGGTCGCGGTAGGAGGTACTGA

mRNA sequence

ATGGGACGCGTTCGCACCAAAACAGTGAAGAAATCTTCCCGTCAAGTCATCGAGCGCTACTATTCGCGCATGACCCTCGACTTCCATACGAACAAGAAGATCCTCGAAGAGGTCGCCATTATCCCTTCCAAGAGACTGCGAAACAAGATCGCCGGATGCTCCACTCACCTCATGAAGCGGATCCAGAAGGGACCGGTTCGCGGCATCTCTCTGAAGCTTCAAGAGGAAGAGCGCGAGCGCCGCATGGACTTCGTTCCCGACGTGTCCGCCATTAAAACCGATCAAATCGAGGTCGACAAGGAGACTCTCGACATGCTTTCTACTCTTGGAATGAACGATATTCCGGGGATTGTTCAGGTCGATCCGACTGTGCCGCAGCAGGTTGGATTTGGATTGGCCGGTCGCGGTAGGAGGTACTGA

Coding sequence (CDS)

ATGGGACGCGTTCGCACCAAAACAGTGAAGAAATCTTCCCGTCAAGTCATCGAGCGCTACTATTCGCGCATGACCCTCGACTTCCATACGAACAAGAAGATCCTCGAAGAGGTCGCCATTATCCCTTCCAAGAGACTGCGAAACAAGATCGCCGGATGCTCCACTCACCTCATGAAGCGGATCCAGAAGGGACCGGTTCGCGGCATCTCTCTGAAGCTTCAAGAGGAAGAGCGCGAGCGCCGCATGGACTTCGTTCCCGACGTGTCCGCCATTAAAACCGATCAAATCGAGGTCGACAAGGAGACTCTCGACATGCTTTCTACTCTTGGAATGAACGATATTCCGGGGATTGTTCAGGTCGATCCGACTGTGCCGCAGCAGGTTGGATTTGGATTGGCCGGTCGCGGTAGGAGGTACTGA

Protein sequence

MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGCSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSTLGMNDIPGIVQVDPTVPQQVGFGLAGRGRRY

Homology

[Close]

BLAST of Lag0026862 vs. NCBI nr
Match: XP_038904935.1 (40S ribosomal protein S17-like [Benincasa hispida])

HSP 1 Score: 262.7 bits (670), Expect = 1.8e-66
Identity = 133/139 (95.68%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGCSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAG STHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSTLGMNDIPGIVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD+SA+KTDQIEVDKETLDMLS LGMNDIPG+VQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDISAVKTDQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPTVPQQVGFGLAGRGRRY 140
           DPTVPQQVGFGL GRGRRY
Sbjct: 121 DPTVPQQVGFGLGGRGRRY 139

[Close]

BLAST of Lag0026862 vs. NCBI nr
Match: XP_008442886.1 (PREDICTED: 40S ribosomal protein S17-like [Cucumis melo] >KAA0043841.1 40S ribosomal protein S17-like [Cucumis melo var. makuwa] >TYK25293.1 40S ribosomal protein S17-like [Cucumis melo var. makuwa])

HSP 1 Score: 261.9 bits (668), Expect = 3.1e-66
Identity = 134/139 (96.40%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGCSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAG STHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSTLGMNDIPGIVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKT+QIEVDKETLDMLS LGMNDIPG+VQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPTVPQQVGFGLAGRGRRY 140
           DPTVPQQVGFGL GRGRRY
Sbjct: 121 DPTVPQQVGFGLGGRGRRY 139

[Close]

BLAST of Lag0026862 vs. NCBI nr
Match: XP_004136500.1 (40S ribosomal protein S17 [Cucumis sativus])

HSP 1 Score: 261.2 bits (666), Expect = 5.3e-66
Identity = 133/139 (95.68%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGCSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMT+DFHTNKKILEEVAIIPSKRLRNKIAG STHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTIDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSTLGMNDIPGIVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKT+QIEVDKETLDMLS LGMNDIPG+VQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPTVPQQVGFGLAGRGRRY 140
           DPTVPQQVGFGL GRGRRY
Sbjct: 121 DPTVPQQVGFGLGGRGRRY 139

[Close]

BLAST of Lag0026862 vs. NCBI nr
Match: XP_022938121.1 (40S ribosomal protein S17-like [Cucurbita moschata] >KAG6596593.1 40S ribosomal protein S17-4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 258.5 bits (659), Expect = 3.4e-65
Identity = 133/139 (95.68%), Postives = 134/139 (96.40%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGCSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAG STHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSTLGMNDIPGIVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVD+ETLDMLS LGM DIPGIVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQV 120

Query: 121 DPTVPQQVGFGLAGRGRRY 140
           DPTVPQQV FGL GRGRRY
Sbjct: 121 DPTVPQQVAFGLGGRGRRY 139

[Close]

BLAST of Lag0026862 vs. NCBI nr
Match: XP_023539023.1 (40S ribosomal protein S17-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 257.7 bits (657), Expect = 5.8e-65
Identity = 132/139 (94.96%), Postives = 134/139 (96.40%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGCSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAG STHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSTLGMNDIPGIVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVD+ETLDMLS LGM DIPG+VQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGLVQV 120

Query: 121 DPTVPQQVGFGLAGRGRRY 140
           DPTVPQQV FGL GRGRRY
Sbjct: 121 DPTVPQQVAFGLGGRGRRY 139

[Close]

BLAST of Lag0026862 vs. ExPASy Swiss-Prot
Match: P49215 (40S ribosomal protein S17 OS=Solanum lycopersicum OX=4081 GN=RPS17 PE=2 SV=3)

HSP 1 Score: 218.0 bits (554), Expect = 6.7e-56
Identity = 119/145 (82.07%), Postives = 125/145 (86.21%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGCSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAG STHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSTLGMNDIPGIVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKTD IEVDKETLDMLS LGM+D+PG+V+ 
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSALGMSDLPGVVK- 120

Query: 121 DPTVPQQV------GFGLAGRGRRY 140
               PQ V      G G  G GR+Y
Sbjct: 121 QAAEPQAVAALPSYGRGGGGFGRKY 144

[Close]

BLAST of Lag0026862 vs. ExPASy Swiss-Prot
Match: Q9LZ17 (40S ribosomal protein S17-4 OS=Arabidopsis thaliana OX=3702 GN=RPS17D PE=2 SV=3)

HSP 1 Score: 213.8 bits (543), Expect = 1.3e-54
Identity = 114/141 (80.85%), Postives = 123/141 (87.23%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGCSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAG STHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSTLGMNDIPGIVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKTD+I+VDKETL+ML++LGM+D PGI  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 DP--TVPQQVGFGLAGRGRRY 140
           +P   +     FG     RRY
Sbjct: 121 EPQQAMAPIAAFGGGRAPRRY 141

[Close]

BLAST of Lag0026862 vs. ExPASy Swiss-Prot
Match: P49205 (40S ribosomal protein S17-1 OS=Arabidopsis thaliana OX=3702 GN=RPS17A PE=2 SV=3)

HSP 1 Score: 210.7 bits (535), Expect = 1.1e-53
Identity = 114/141 (80.85%), Postives = 122/141 (86.52%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGCSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAG STHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSTLGMNDIPGIVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKTD+I+VDKETL+ML++LGM+D  GI  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAV 120

Query: 121 DP--TVPQQVGFGLAGRGRRY 140
           DP   +     FG     RRY
Sbjct: 121 DPQQAMAPIPAFGGGRAPRRY 141

[Close]

BLAST of Lag0026862 vs. ExPASy Swiss-Prot
Match: Q9SJ36 (40S ribosomal protein S17-2 OS=Arabidopsis thaliana OX=3702 GN=RPS17B PE=2 SV=3)

HSP 1 Score: 210.7 bits (535), Expect = 1.1e-53
Identity = 113/140 (80.71%), Postives = 121/140 (86.43%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGCSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAG STHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSTLGMNDIPGIVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKTD+I+VDKETL+ML++LGM+D  GI  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAV 120

Query: 121 DPTVPQQVGFGLAGRG-RRY 140
           +P           GR  RRY
Sbjct: 121 EPQQAMAPIAAFGGRAPRRY 140

[Close]

BLAST of Lag0026862 vs. ExPASy Swiss-Prot
Match: Q9SQZ1 (40S ribosomal protein S17-3 OS=Arabidopsis thaliana OX=3702 GN=RPS17C PE=2 SV=3)

HSP 1 Score: 207.2 bits (526), Expect = 1.2e-52
Identity = 107/121 (88.43%), Postives = 115/121 (95.04%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGCSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAG STHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSTLGMNDIPGIVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIK D ++VDKETL+ML++LGM+DI GI QV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQV 120

Query: 121 D 122
           +
Sbjct: 121 E 121

The following BLAST results are available for this feature:

BLAST of Lag0026862 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904935.1	1.8e-66	95.68	40S ribosomal protein S17-like [Benincasa hispida]	[more]
XP_008442886.1	3.1e-66	96.40	PREDICTED: 40S ribosomal protein S17-like [Cucumis melo] >KAA0043841.1 40S ribos...	[more]
XP_004136500.1	5.3e-66	95.68	40S ribosomal protein S17 [Cucumis sativus]	[more]
XP_022938121.1	3.4e-65	95.68	40S ribosomal protein S17-like [Cucurbita moschata] >KAG6596593.1 40S ribosomal ...	[more]
XP_023539023.1	5.8e-65	94.96	40S ribosomal protein S17-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0026862 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49215	6.7e-56	82.07	40S ribosomal protein S17 OS=Solanum lycopersicum OX=4081 GN=RPS17 PE=2 SV=3	[more]
Q9LZ17	1.3e-54	80.85	40S ribosomal protein S17-4 OS=Arabidopsis thaliana OX=3702 GN=RPS17D PE=2 SV=3	[more]
P49205	1.1e-53	80.85	40S ribosomal protein S17-1 OS=Arabidopsis thaliana OX=3702 GN=RPS17A PE=2 SV=3	[more]
Q9SJ36	1.1e-53	80.71	40S ribosomal protein S17-2 OS=Arabidopsis thaliana OX=3702 GN=RPS17B PE=2 SV=3	[more]
Q9SQZ1	1.2e-52	88.43	40S ribosomal protein S17-3 OS=Arabidopsis thaliana OX=3702 GN=RPS17C PE=2 SV=3	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001210	Ribosomal protein S17e	PFAM	PF00833	Ribosomal_S17e	coord: 1..120 e-value: 2.6E-60 score: 201.7
IPR001210	Ribosomal protein S17e	PANTHER	PTHR10732	40S RIBOSOMAL PROTEIN S17	coord: 1..139
IPR001210	Ribosomal protein S17e	HAMAP	MF_00511	Ribosomal_S17e	coord: 1..63 score: 19.263031
IPR036401	Ribosomal protein S17e-like superfamily	GENE3D	1.10.60.20		coord: 1..62 e-value: 1.3E-32 score: 113.1
IPR036401	Ribosomal protein S17e-like superfamily	SUPERFAMILY	116820	Rps17e-like	coord: 1..62
None	No IPR available	PANTHER	PTHR10732:SF5	40S RIBOSOMAL PROTEIN S17	coord: 1..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0026862.1	Lag0026862.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome