Lag0026860 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0026860
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	RNase H domain-containing protein
Location	chr10: 42636408 .. 42636852 (+)
RNA-Seq Expression	Lag0026860
Synteny	Lag0026860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACTGCAAAGTGGGCTACTAGTTATTTGGCTGCATTCCGATTGGCTAACGGGAGGCAGTCGGGGGGGGGGGGGAGGTGGTGAGGCAAGGTCGCGAGTATGTGAGGTGGAAGGTGCTTGAGGATGTGTGATATAAAGTCAACGTTGACGCTTCTTTTTAGTTGGGTGTGAGGAAGACAGGGACGAGGGTGGTGGTTCGAGATCGTATGGGCCAAGTGATGGTAGCGACTATCGAGGTGCACGAGCATGTGGGCTATTCAGATATGGCAGAGGGACTAGCTGTGGTGGATGGTCTGAAGCCGGCGGTAGATATGGGGTTTTGGGCGATAGTTGTGGAGACGGATTCATGGAGAGTATTCCAGATTGCTAGGCGGGACCAAGATGAGTTATCATACTTGTGCGTGGTGATTTCTGAGGTGTTGGAGGACCTGTCGGAAGGTTGA

mRNA sequence

ATGAGACTGCAAAGTGGGCTACTAGTTATTTGGCTGCATTCCGATTGGCTAACGGGAGGCAGTCGGGGGGGGGGGGGAGGTGGTGAGGCAAGGTCGCGATTGGGTGTGAGGAAGACAGGGACGAGGGTGGTGGTTCGAGATCGTATGGGCCAAGTGATGGTAGCGACTATCGAGGTGCACGAGCATGTGGGCTATTCAGATATGGCAGAGGGACTAGCTGTGGTGGATGGTCTGAAGCCGGCGGTAGATATGGGGTTTTGGGCGATAGTTGTGGAGACGGATTCATGGAGAGTATTCCAGATTGCTAGGCGGGACCAAGATGAGTTATCATACTTGTGCGTGGTGATTTCTGAGGTGTTGGAGGACCTGTCGGAAGGTTGA

Coding sequence (CDS)

ATGAGACTGCAAAGTGGGCTACTAGTTATTTGGCTGCATTCCGATTGGCTAACGGGAGGCAGTCGGGGGGGGGGGGGAGGTGGTGAGGCAAGGTCGCGATTGGGTGTGAGGAAGACAGGGACGAGGGTGGTGGTTCGAGATCGTATGGGCCAAGTGATGGTAGCGACTATCGAGGTGCACGAGCATGTGGGCTATTCAGATATGGCAGAGGGACTAGCTGTGGTGGATGGTCTGAAGCCGGCGGTAGATATGGGGTTTTGGGCGATAGTTGTGGAGACGGATTCATGGAGAGTATTCCAGATTGCTAGGCGGGACCAAGATGAGTTATCATACTTGTGCGTGGTGATTTCTGAGGTGTTGGAGGACCTGTCGGAAGGTTGA

Protein sequence

MRLQSGLLVIWLHSDWLTGGSRGGGGGGEARSRLGVRKTGTRVVVRDRMGQVMVATIEVHEHVGYSDMAEGLAVVDGLKPAVDMGFWAIVVETDSWRVFQIARRDQDELSYLCVVISEVLEDLSEG

Homology

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BLAST of Lag0026860 vs. NCBI nr
Match: XP_022139684.1 (uncharacterized protein LOC111010533 [Momordica charantia])

HSP 1 Score: 60.8 bits (146), Expect = 9.4e-06
Identity = 31/82 (37.80%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 43  VVVRDRMGQVMVATIEVHEHVGYSDMAEGLAVVDGLKPAVDMGFWAIVVETDSWRVFQIA 102
           +++RD  GQV+ +  +  EHV   D AE LA V+GL+ A++ G   I++ETDS R++ + 
Sbjct: 118 IIIRDHRGQVLASATKYLEHVASVDDAEALAAVEGLRVAMETGISPILLETDSLRIYNLF 177

Query: 103 RRDQDELSYLCVVISEVLEDLS 125
            RD++ LS    +I  V   L+
Sbjct: 178 ARDKEGLSKTGSIIEYVKTHLA 199

The following BLAST results are available for this feature:

BLAST of Lag0026860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139684.1	9.4e-06	37.80	uncharacterized protein LOC111010533 [Momordica charantia]	[more]

BLAST of Lag0026860 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 38..121 e-value: 1.1E-11 score: 44.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0026860.1	Lag0026860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity