Lag0026839 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0026839
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionDNA-directed DNA polymerase, family B, conserved site
Locationchr10: 42437343 .. 42437891 (-)
RNA-Seq ExpressionLag0026839
SyntenyLag0026839
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGGCGGCCTGAACAAGATCGCCACCGCTCTCATCGCCGTCTTCGCAATCTCTTTCCTACTCCTCCTCGCCCAAATCCTCTTCTTTTTCTCTCGCCGCCGCCACCACCACGCTGCCGCCGAACCCAAGGAAAAATGCGTCTACCTTTTCTGCTGGAGGAACCAATCGCGGGTCGAACCTAAAGAAATCGCGTCCAAAACCCACGATGATTCCGAAGCGGCGGCGGAGACGGTGGCGCTCGCCGACGAGTTGGAGAAGTGGCGGGAACTGTGCGGACCGTCGAGAACGCTTTTCACTATCAATGAAGAAGAAGAGAGAGAGGGAATCGAATCTTTCGAGTACGATCCTAAACTGAAGGCGCCTTCTTCTTCCGATACGGATGTGGACGAGGATACGCCGCCGTTCCATACGCCCTGCGGTTCTCCTCCGTTCTTCACGCCGTCGCCGTCGCCCACTCGTGACGCCGGCGACTTTCCGGTGGAAAAAGATTCTTCCGACGACAATGGAACGGCGCCGTTTTTGGCTATTGAGATTAGTGGCCACTGA

mRNA sequence

ATGGACGGCGGCCTGAACAAGATCGCCACCGCTCTCATCGCCGTCTTCGCAATCTCTTTCCTACTCCTCCTCGCCCAAATCCTCTTCTTTTTCTCTCGCCGCCGCCACCACCACGCTGCCGCCGAACCCAAGGAAAAATGCGTCTACCTTTTCTGCTGGAGGAACCAATCGCGGGTCGAACCTAAAGAAATCGCGTCCAAAACCCACGATGATTCCGAAGCGGCGGCGGAGACGGTGGCGCTCGCCGACGAGTTGGAGAAGTGGCGGGAACTGTGCGGACCGTCGAGAACGCTTTTCACTATCAATGAAGAAGAAGAGAGAGAGGGAATCGAATCTTTCGAGTACGATCCTAAACTGAAGGCGCCTTCTTCTTCCGATACGGATGTGGACGAGGATACGCCGCCGTTCCATACGCCCTGCGGTTCTCCTCCGTTCTTCACGCCGTCGCCGTCGCCCACTCGTGACGCCGGCGACTTTCCGGTGGAAAAAGATTCTTCCGACGACAATGGAACGGCGCCGTTTTTGGCTATTGAGATTAGTGGCCACTGA

Coding sequence (CDS)

ATGGACGGCGGCCTGAACAAGATCGCCACCGCTCTCATCGCCGTCTTCGCAATCTCTTTCCTACTCCTCCTCGCCCAAATCCTCTTCTTTTTCTCTCGCCGCCGCCACCACCACGCTGCCGCCGAACCCAAGGAAAAATGCGTCTACCTTTTCTGCTGGAGGAACCAATCGCGGGTCGAACCTAAAGAAATCGCGTCCAAAACCCACGATGATTCCGAAGCGGCGGCGGAGACGGTGGCGCTCGCCGACGAGTTGGAGAAGTGGCGGGAACTGTGCGGACCGTCGAGAACGCTTTTCACTATCAATGAAGAAGAAGAGAGAGAGGGAATCGAATCTTTCGAGTACGATCCTAAACTGAAGGCGCCTTCTTCTTCCGATACGGATGTGGACGAGGATACGCCGCCGTTCCATACGCCCTGCGGTTCTCCTCCGTTCTTCACGCCGTCGCCGTCGCCCACTCGTGACGCCGGCGACTTTCCGGTGGAAAAAGATTCTTCCGACGACAATGGAACGGCGCCGTTTTTGGCTATTGAGATTAGTGGCCACTGA

Protein sequence

MDGGLNKIATALIAVFAISFLLLLAQILFFFSRRRHHHAAAEPKEKCVYLFCWRNQSRVEPKEIASKTHDDSEAAAETVALADELEKWRELCGPSRTLFTINEEEEREGIESFEYDPKLKAPSSSDTDVDEDTPPFHTPCGSPPFFTPSPSPTRDAGDFPVEKDSSDDNGTAPFLAIEISGH
Homology
BLAST of Lag0026839 vs. NCBI nr
Match: XP_023005969.1 (uncharacterized protein LOC111498829 [Cucurbita maxima])

HSP 1 Score: 228.8 bits (582), Expect = 3.8e-56
Identity = 124/181 (68.51%), Postives = 139/181 (76.80%), Query Frame = 0

Query: 1   MDGGLNKIATALIAVFAISFLLLLAQILFFFSRRRHHHAAAEPKEKCVYLFCWRNQSRVE 60
           MDGGL KIATALI++FAI+FLLLLAQILFFFSR RHH    +PK+ C+YLFCWR ++R+E
Sbjct: 1   MDGGLYKIATALISLFAITFLLLLAQILFFFSRTRHHPTPTQPKQNCIYLFCWRTKTRIE 60

Query: 61  PKEIASKTHDDSEAAAETVALADELEKWRELCGPSRTLFTI-NEEEEREGIESFEYDPKL 120
           P EIASK HDDS A AET A+  ELEKWR LCGPSR LFTI  EEEEREG+ES E DPK 
Sbjct: 61  PTEIASKVHDDS-ATAETAAVDQELEKWRVLCGPSRALFTIVEEEEEREGVESCECDPK- 120

Query: 121 KAPSSSDTDVDEDTPPFHTPCGSPPFFTPSPSPTRDAGDFPVEKDSSDDNGTAPFLAIEI 180
                     D DT PF+TPCGSPPFFT  PSPT DA DFPV+KDS D + TA FLAIEI
Sbjct: 121 ---------PDFDTTPFYTPCGSPPFFT--PSPTHDAADFPVQKDSPDGDRTASFLAIEI 168

BLAST of Lag0026839 vs. NCBI nr
Match: KAG7028145.1 (hypothetical protein SDJN02_09325, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 220.7 bits (561), Expect = 1.0e-53
Identity = 124/181 (68.51%), Postives = 139/181 (76.80%), Query Frame = 0

Query: 1   MDGGLNKIATALIAVFAISFLLLLAQILFFFSRRRHHHAAAEPKEKCVYLFCWRNQSRVE 60
           MDGGLNKIATALI++FAI+FLLLLAQILFFFSR RHH    +PK+ C+YLF WR ++R+E
Sbjct: 1   MDGGLNKIATALISLFAITFLLLLAQILFFFSRTRHHPTPTQPKQNCIYLFRWRTKTRIE 60

Query: 61  PKEIASKTHDDSEAAAETVALADELEKWRELCGPSRTLFTI-NEEEEREGIESFEYDPKL 120
           P EIASK HDDS A+ ET A+  ELEKWR LCGPSR LFTI  EEEEREGIES E D K 
Sbjct: 61  PTEIASKVHDDS-ASPETAAVDQELEKWRVLCGPSRALFTIVEEEEEREGIESCECDSK- 120

Query: 121 KAPSSSDTDVDEDTPPFHTPCGSPPFFTPSPSPTRDAGDFPVEKDSSDDNGTAPFLAIEI 180
                     D DT PF+TPCGSPPFF  SPSPTRDAGDFPV+KDSSD +    FLAIEI
Sbjct: 121 ---------PDFDTTPFYTPCGSPPFF--SPSPTRDAGDFPVQKDSSDGS----FLAIEI 164

BLAST of Lag0026839 vs. NCBI nr
Match: XP_022943016.1 (uncharacterized protein LOC111447877 [Cucurbita moschata])

HSP 1 Score: 220.7 bits (561), Expect = 1.0e-53
Identity = 124/181 (68.51%), Postives = 139/181 (76.80%), Query Frame = 0

Query: 1   MDGGLNKIATALIAVFAISFLLLLAQILFFFSRRRHHHAAAEPKEKCVYLFCWRNQSRVE 60
           MDGGLNKIATALI++FAI+FLLLLAQILFFFSR RHH    +PK+ C+YLF WR ++R+E
Sbjct: 1   MDGGLNKIATALISLFAITFLLLLAQILFFFSRTRHHPTPTQPKQNCIYLFRWRTKTRIE 60

Query: 61  PKEIASKTHDDSEAAAETVALADELEKWRELCGPSRTLFTI-NEEEEREGIESFEYDPKL 120
           P EIASK +DDS A+ ET A+  ELEKWR LCGPSR LFTI  EEEEREGIES E D K 
Sbjct: 61  PTEIASKVYDDS-ASPETAAVDQELEKWRVLCGPSRALFTIVEEEEEREGIESCECDSK- 120

Query: 121 KAPSSSDTDVDEDTPPFHTPCGSPPFFTPSPSPTRDAGDFPVEKDSSDDNGTAPFLAIEI 180
                     D DT PFHTPCGSPPFF  SPSPTRDAGDFPV+KDSSD +    FLAIEI
Sbjct: 121 ---------PDFDTTPFHTPCGSPPFF--SPSPTRDAGDFPVQKDSSDGS----FLAIEI 164

BLAST of Lag0026839 vs. NCBI nr
Match: KAG6596606.1 (hypothetical protein SDJN03_09786, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 219.5 bits (558), Expect = 2.3e-53
Identity = 123/181 (67.96%), Postives = 139/181 (76.80%), Query Frame = 0

Query: 1   MDGGLNKIATALIAVFAISFLLLLAQILFFFSRRRHHHAAAEPKEKCVYLFCWRNQSRVE 60
           MDGGLNKIATALI++FAI+FLLLLAQILFFFSR RHH    +PK+ C+YLF WR ++R+E
Sbjct: 1   MDGGLNKIATALISLFAITFLLLLAQILFFFSRTRHHPTPTQPKQNCIYLFRWRTKTRIE 60

Query: 61  PKEIASKTHDDSEAAAETVALADELEKWRELCGPSRTLFTI-NEEEEREGIESFEYDPKL 120
           P EIASK HDDS A+ ET A+  ELEKWR LCGP+R LFTI  EEEEREGIES E D K 
Sbjct: 61  PTEIASKVHDDS-ASPETAAVDQELEKWRVLCGPTRALFTIVEEEEEREGIESCECDSK- 120

Query: 121 KAPSSSDTDVDEDTPPFHTPCGSPPFFTPSPSPTRDAGDFPVEKDSSDDNGTAPFLAIEI 180
                     D DT PF+TPCGSPPFF  SPSPTRDAGDFPV+KDSSD +    FLAIEI
Sbjct: 121 ---------PDFDTTPFYTPCGSPPFF--SPSPTRDAGDFPVQKDSSDGS----FLAIEI 164

BLAST of Lag0026839 vs. NCBI nr
Match: XP_038905411.1 (uncharacterized protein LOC120091450 [Benincasa hispida])

HSP 1 Score: 206.5 bits (524), Expect = 2.0e-49
Identity = 118/190 (62.11%), Postives = 138/190 (72.63%), Query Frame = 0

Query: 1   MDGGLNKIATALIAVFAISFLLLLAQILFFFSRRRHHHAAAEPKEKCVYLFCW-RNQSRV 60
           MDGGLNK ATA+IAVF ++FLLL+AQIL+F SRRR      EP EKC Y+FCW RNQSR+
Sbjct: 1   MDGGLNKFATAIIAVFVLTFLLLVAQILYFLSRRRDQR-GGEPNEKCFYIFCWPRNQSRI 60

Query: 61  EPKEIA--SKTHDDSEAA---AETVALADELEKWRELCGPSRTLFTI-NEEEEREG-IES 120
           EPKE+   SK + D E A    E  A+ +ELEKW+ELCGPSRTLFTI  EEEEREG IE 
Sbjct: 61  EPKEVVSISKMNGDCEGAVVVVEMAAVDNELEKWQELCGPSRTLFTIKEEEEEREGIIEC 120

Query: 121 FEYD--PKLKAPSSSDTDVDEDTPPFHTPCGSPPFFTPSPSPTRDAGDFPVEKDSSDDNG 180
           F YD  PKLK        +DEDT PFHTPC SPP+FTPS SPTRD+ DFP ++  S+DN 
Sbjct: 121 FGYDPIPKLK--------MDEDTTPFHTPCASPPYFTPSSSPTRDSHDFPADRGCSEDNS 180

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023005969.13.8e-5668.51uncharacterized protein LOC111498829 [Cucurbita maxima][more]
KAG7028145.11.0e-5368.51hypothetical protein SDJN02_09325, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022943016.11.0e-5368.51uncharacterized protein LOC111447877 [Cucurbita moschata][more]
KAG6596606.12.3e-5367.96hypothetical protein SDJN03_09786, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_038905411.12.0e-4962.11uncharacterized protein LOC120091450 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 103..133
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 103..182
NoneNo IPR availablePANTHERPTHR34054:SF4PROTEIN, PUTATIVE-RELATEDcoord: 1..180
NoneNo IPR availablePANTHERPTHR34054EXPRESSED PROTEINcoord: 1..180
NoneNo IPR availableCDDcd12087TM_EGFR-likecoord: 11..38
e-value: 9.02032E-4
score: 33.6578

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0026839.1Lag0026839.1mRNA