Lag0026829 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0026829
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr10: 42349987 .. 42350382 (+)
RNA-Seq Expression	Lag0026829
Synteny	Lag0026829

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCCAGCAATCAAGGAAAGGTAATCTGAAGATGTCTGATTATTTGCGACTTATGAAAAACCATGCAGATAACCTTGGGCAAGCTGGGAGCCCGGTGAGTACTCGATCTCTGATTCCATAGGTTCTTCTTGGACTGGATGAAGAGTTCAATCCAGTGGTGGCTATGATTCAAGGGAGGACAGGTATCAGTTGGTCCGAAATGTAGGACGAGCTGCTTGTATTTGAGAAACGATTTGACCTTCAGAACAGTCTAAAGAGTCCTTTGTCACTTGGACAGGGGGCAACCGTAAATATGGCAAATGTCAGAGACAATGACAATCAGAAACCTCAAGGGAGCGGCAACAACAACAATAACAATAGATCAAATGGATACAGTGGTTATGGCAGAGGATAA

mRNA sequence

ATGTTCCAGCAATCAAGGAAAGGTAATCTGAAGATGTCTGATTATTTGCGACTTATGAAAAACCATGCAGATAACCTTGGGCAAGCTGGGAGCCCGGGGGCAACCGTAAATATGGCAAATGTCAGAGACAATGACAATCAGAAACCTCAAGGGAGCGGCAACAACAACAATAACAATAGATCAAATGGATACAGTGGTTATGGCAGAGGATAA

Coding sequence (CDS)

ATGTTCCAGCAATCAAGGAAAGGTAATCTGAAGATGTCTGATTATTTGCGACTTATGAAAAACCATGCAGATAACCTTGGGCAAGCTGGGAGCCCGGGGGCAACCGTAAATATGGCAAATGTCAGAGACAATGACAATCAGAAACCTCAAGGGAGCGGCAACAACAACAATAACAATAGATCAAATGGATACAGTGGTTATGGCAGAGGATAA

Protein sequence

MFQQSRKGNLKMSDYLRLMKNHADNLGQAGSPGATVNMANVRDNDNQKPQGSGNNNNNNRSNGYSGYGRG

Homology

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BLAST of Lag0026829 vs. NCBI nr
Match: XP_022148963.1 (uncharacterized protein LOC111017501 [Momordica charantia])

HSP 1 Score: 57.4 bits (137), Expect = 5.8e-05
Identity = 26/35 (74.29%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1   MFQQSRKGNLKMSDYLRLMKNHADNLGQAGSPGAT 36
           +FQQ+RKG+LKM+D+LR+MK+HADNLGQAGSP  T
Sbjct: 92  VFQQTRKGSLKMTDFLRVMKSHADNLGQAGSPVPT 126

The following BLAST results are available for this feature:

BLAST of Lag0026829 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148963.1	5.8e-05	74.29	uncharacterized protein LOC111017501 [Momordica charantia]	[more]

BLAST of Lag0026829 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0026829.1	Lag0026829.1	mRNA