Lag0026828 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0026828
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase, RNA-dependent DNA polymerase
Location	chr10: 42349412 .. 42349858 (+)
RNA-Seq Expression	Lag0026828
Synteny	Lag0026828

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAACATCATTATCTTCCGCTTTAAAGTTTACAAAGTTTTCCGTACTCATGCATGTGGTAGCGACTCCTTTGTACGTTTTTATCCCCTCTTTAGTCGGGTCGTTACACTGCCAATTCTTAGGAGCTACAAGCTAGAAGGTCATTTGACCGGAGAACAACCGTGCCTAACAAAGTTCATTCAAGCCGCTGTCGGAAGAACCAATCCTGGTTCATCGCAAGCTGGAGCAGGAGTGTCAAGCTCTGAGGCTGTTGCAAGTGCAGCAGCAGAATCCCTACCCACCCAAGAGGTAAATCCTTTATATGAGTCGTGGTTAGCCATAGATCAACTTTTGCTTGGCTGGTTGTATAACTCTATGACAGCTGAGATTGCTACCCAAGTGATGGGATGCGAAAATGCTCAAGAACTGTGGTCAGCGGTACAAGAACTTTATGGTGTTCAATAG

mRNA sequence

ATGAAAAACATCATTATCTTCCGCTTTAAAGTTTACAAAGTTTTCCGTACTCATGCATGTGGTAGCGACTCCTTTGTACGTTTTTATCCCCTCTTTAGTCGGGTCGTTACACTGCCAATTCTTAGGAGCTACAAGCTAGAAGGTCATTTGACCGGAGAACAACCGTGCCTAACAAAGTTCATTCAAGCCGCTGTCGGAAGAACCAATCCTGGTTCATCGCAAGCTGGAGCAGGAGTGTCAAGCTCTGAGGCTGTTGCAAGTGCAGCAGCAGAATCCCTACCCACCCAAGAGGTAAATCCTTTATATGAGTCGTGGTTAGCCATAGATCAACTTTTGCTTGGCTGGTTGTATAACTCTATGACAGCTGAGATTGCTACCCAAGTGATGGGATGCGAAAATGCTCAAGAACTGTGGTCAGCGGTACAAGAACTTTATGGTGTTCAATAG

Coding sequence (CDS)

ATGAAAAACATCATTATCTTCCGCTTTAAAGTTTACAAAGTTTTCCGTACTCATGCATGTGGTAGCGACTCCTTTGTACGTTTTTATCCCCTCTTTAGTCGGGTCGTTACACTGCCAATTCTTAGGAGCTACAAGCTAGAAGGTCATTTGACCGGAGAACAACCGTGCCTAACAAAGTTCATTCAAGCCGCTGTCGGAAGAACCAATCCTGGTTCATCGCAAGCTGGAGCAGGAGTGTCAAGCTCTGAGGCTGTTGCAAGTGCAGCAGCAGAATCCCTACCCACCCAAGAGGTAAATCCTTTATATGAGTCGTGGTTAGCCATAGATCAACTTTTGCTTGGCTGGTTGTATAACTCTATGACAGCTGAGATTGCTACCCAAGTGATGGGATGCGAAAATGCTCAAGAACTGTGGTCAGCGGTACAAGAACTTTATGGTGTTCAATAG

Protein sequence

MKNIIIFRFKVYKVFRTHACGSDSFVRFYPLFSRVVTLPILRSYKLEGHLTGEQPCLTKFIQAAVGRTNPGSSQAGAGVSSSEAVASAAAESLPTQEVNPLYESWLAIDQLLLGWLYNSMTAEIATQVMGCENAQELWSAVQELYGVQ

Homology

[Close]

BLAST of Lag0026828 vs. NCBI nr
Match: XP_038902487.1 (uncharacterized protein LOC120089143 [Benincasa hispida])

HSP 1 Score: 113.6 bits (283), Expect = 1.4e-21
Identity = 65/127 (51.18%), Postives = 80/127 (62.99%), Query Frame = 0


Query: 31  LFSRVVTLPILRSYKLEGHLTGEQPCLTKFIQAA--VGRTNPGSSQAGAGVSSSEAVA-- 90
           L  R + LPILRSY+LEGHLTGE PC  +F  A      T P   +AG G   S   +  
Sbjct: 53  LLWRNLALPILRSYRLEGHLTGEDPCPPRFSVATDQSTATVPPGDEAGLGGQYSGIASLT 112

Query: 91  -----SAAAESLPTQEVNPLYESWLAIDQLLLGWLYNSMTAEIATQVMGCENAQELWSAV 149
                + A+ S P  +VNP YES   +DQLLLGWLYN MTAE+A QVMG EN + LW+A+
Sbjct: 113 PQQGITTASNSSPVLQVNPFYESRTVVDQLLLGWLYNFMTAEVAMQVMGYENYKYLWAAI 172

[Close]

BLAST of Lag0026828 vs. NCBI nr
Match: TYK02246.1 (uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 105.5 bits (262), Expect = 3.9e-19
Identity = 52/116 (44.83%), Postives = 73/116 (62.93%), Query Frame = 0


Query: 31  LFSRVVTLPILRSYKLEGHLTGEQPCLTKFIQAAVGRTNPGSSQAGAGVSSSEAVASAAA 90
           L  + + LPI++SYK EGHLTGE PC  KFI   +G +            ++EA   A++
Sbjct: 38  LLWKTLALPIMKSYKFEGHLTGENPCPPKFITNQIGESQSEID------GTAEATDGASS 97

Query: 91  ESLPTQEVNPLYESWLAIDQLLLGWLYNSMTAEIATQVMGCENAQELWSAVQELYG 147
            S  T+ VNP ++ WL    LLLGW+YNSMTAE+A Q+ G   A++LW A+Q+L+G
Sbjct: 98  RSTATKTVNPKFDQWLTSYLLLLGWIYNSMTAEVAFQLKGFNTAKDLWEAIQDLFG 147

[Close]

BLAST of Lag0026828 vs. NCBI nr
Match: XP_016902203.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo])

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-18
Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 0


Query: 31  LFSRVVTLPILRSYKLEGHLTGEQPCLTKFIQAAVGRTNPGSSQAGAGVSSSEAVASAAA 90
           L  + + LPIL+ YKLEGHLT E PC + F+ +A   +N   ++ GA  +        A+
Sbjct: 41  LLWKTLALPILKDYKLEGHLTAETPCPSHFVLSA-SSSNTTVTEEGADAT------IGAS 100

Query: 91  ESLPTQEVNPLYESWLAIDQLLLGWLYNSMTAEIATQVMGCENAQELWSAVQELYGVQ 149
            S+  + VNPL+E W+  D LLLGWLYNSMT ++A Q+MG  N ++LW A Q+ +GVQ
Sbjct: 101 SSITPRIVNPLFEQWVTTDLLLLGWLYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQ 151

[Close]

BLAST of Lag0026828 vs. NCBI nr
Match: XP_016902205.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X5 [Cucumis melo])

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-18
Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 0


Query: 31  LFSRVVTLPILRSYKLEGHLTGEQPCLTKFIQAAVGRTNPGSSQAGAGVSSSEAVASAAA 90
           L  + + LPIL+ YKLEGHLT E PC + F+ +A   +N   ++ GA  +        A+
Sbjct: 41  LLWKTLALPILKDYKLEGHLTAETPCPSHFVLSA-SSSNTTVTEEGADAT------IGAS 100

Query: 91  ESLPTQEVNPLYESWLAIDQLLLGWLYNSMTAEIATQVMGCENAQELWSAVQELYGVQ 149
            S+  + VNPL+E W+  D LLLGWLYNSMT ++A Q+MG  N ++LW A Q+ +GVQ
Sbjct: 101 SSITPRIVNPLFEQWVTTDLLLLGWLYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQ 151

[Close]

BLAST of Lag0026828 vs. NCBI nr
Match: XP_016902197.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo])

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-18
Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 0


Query: 31  LFSRVVTLPILRSYKLEGHLTGEQPCLTKFIQAAVGRTNPGSSQAGAGVSSSEAVASAAA 90
           L  + + LPIL+ YKLEGHLT E PC + F+ +A   +N   ++ GA  +        A+
Sbjct: 41  LLWKTLALPILKDYKLEGHLTAETPCPSHFVLSA-SSSNTTVTEEGADAT------IGAS 100

Query: 91  ESLPTQEVNPLYESWLAIDQLLLGWLYNSMTAEIATQVMGCENAQELWSAVQELYGVQ 149
            S+  + VNPL+E W+  D LLLGWLYNSMT ++A Q+MG  N ++LW A Q+ +GVQ
Sbjct: 101 SSITPRIVNPLFEQWVTTDLLLLGWLYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQ 151

The following BLAST results are available for this feature:

BLAST of Lag0026828 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902487.1	1.4e-21	51.18	uncharacterized protein LOC120089143 [Benincasa hispida]	[more]
TYK02246.1	3.9e-19	44.83	uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa]	[more]
XP_016902203.1	1.1e-18	44.92	PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo]	[more]
XP_016902205.1	1.1e-18	44.92	PREDICTED: uncharacterized protein LOC107991581 isoform X5 [Cucumis melo]	[more]
XP_016902197.1	1.1e-18	44.92	PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo]	[more]

BLAST of Lag0026828 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0026828.1	Lag0026828.1	mRNA