Lag0026824 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0026824
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotran_gag_3 domain-containing protein
Location	chr10: 42326544 .. 42329114 (+)
RNA-Seq Expression	Lag0026824
Synteny	Lag0026824

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACAAGGAGTTAACGAGGACAACCAGGCAGAAATCAGACTGGAAGATGGACCTAAGAGGTGAAACCGACAAGTGGGACGGGCCAAGACCGAAGGGGTCGTCTGGTCTGGCTCCGTATGGTCCCTACTGCCTCTGGCCGCCCTGGTTCCGCCTGGTTTGTCTCAAAACGCCTCCGAATTCCTAAAAACCCTAGGAGGATGAGCATGTATTTATACCCCTCTTCGCCACTGAAGAAGAGGACCCGAACTCTATTCTCGACTCTCTCTCTCTTGCTCTCTAGCCCTCCTACTTCCGTTTTCCGACTTAAGCATCGGAGGCGGTGTGGCTAGCACCACACCATTCTGCAGGTTTACAGTTTTGCAGGCCACGTCTTCCCCCTCATCTAAAAATTTACCGTTGGTGGCACGTGAAGGTCAGGTGAGTTCCCTCTGACCAAATTTGACCATCAACAGATAAACATGTGGTTTTATCTCAAGACCAATTGACAATGAGAAGGGTAACTCATGTATATCCTTATAAAAGAATGTGAGGTCTACCTTTTCAACGTGAGATCCTCAACATACTATGCAGTAATTTTTGTAAAAACAAGGGCAAAATACACTTTTGGTCCCTGAGGTTTGAGGTTGATGTCTATTTGGTCCCCGAGGTTTTAAAAGATACACTTTAGTCCCTGAGATTTGAAAAGTAGTTTTAAATGGTCCCTGAATTAATTTGACCGTTAGTTAACTAACGGAAAAATGACGTGACACGTTGAGATAACAAATTTTAAATGAGGTGGACAAATTTTATTATTTTATATTAATTTTTTAGATTTACATGGCTTTTCTCCTTTCTCTTTCCTTCATCGGATCACCATCTTCATCCCCCATTTTTTTCTCTCTCTAAAATGTTCATTCCCCCCAAATCTCTCTCTTCCCAATTTCTCTCTCTCCTCTCCAAAACTATTAATTCTATATTATTTTTAACCTATTGTGGGATATCCTTTCTCTATTCTCACCTCTTTTTCTTTCATTCTTCATTTTCTCCCTGGTTTCTTTCTCATCCATAGCCCTATCCTATCTTCCTCCTCTCTTCTTTTTCAGCTTTCTCTCTCTTCTTTTCTCCTATCTTTCACTTTTTTAGAGAAAGAAAATACATAAAGAGAAAGGAAAATGAAAGTTTATATTTCTACGACTCTTTTAGAGAAAAAAAGAAAATTTTGTATTTCTACAATTAGGAGAAATTTCTATTCTGCAATTTACAGAGAGAGAAAGTGGGAGATGAAAGTAATTTTCTCTCTCTAAAAAGCTGCAGAAAAACCAAAAAAGAAGTTGCATAAACAAAAAATTAGTTTCACCTCCCATTTACTCTCTCTAAAGTTGCCAAAAAAAAAGTTGCATAAACAAAAAAAAAATTACTTCAATCTCTCTCTTCCCCTCTCTAAGTTGCAAAAGTTCTGAAAAAAAAGTTTATAAACAGAAAATTACTTCTATCTCCTTCTTTCTCTCTCGGTAAGAGTTGCAAATTTTTCAAACACGTTGATCTGATGTAGATCAAAGAATTCCTCATCTATACATACACAAAACTAATGTTCCCGCTAGATCTGGAACAAAACGACCATTGTCAGTTGCTCCCTCCTCTCTGTTATGGATATAGTTATTTTGTTATGGGTTTTTGTTATTTTTCCATGATCTTCTCCCTTTTTGTTATTTTATATTTTGTATGCTGTTGTTCCTTTGTGTATAAATAGGGATCAATTATGTATTCTCAAATCACTCAATCAATACAACCTTTTCATAATCTCTGAAAAGTTTCATGGTATCAGAGCTCTAAGTGACTCACGTCTTTTTTGTTTCCTCTTTTTTCCACGCTTCCCTCTTTTTGCTGAGATGACATCTAACGACTCTCATTCACCAATATTTTTGCTCTCAAATATCTGTAACCTAATTTCTTTGAGGCTTGATTCCACAAATTTTGTCCTCTGGAAATTTCAACTACATCGATCTTAAAGGCTCACAAGTTGTTTGGATTTATCGATGGCTCCACTAATTGCCCTCCAAAGACGGTTCCATCATCCACCACATTGTCCTCTACATCGACGGAGACTGCAACTGAAGCACCTCCTGCTCCAGTATCTTCTCAGATTAATCCACTTTATGAGGAGTGGGTTGCCAAAGATCAAGCTCTAATGACACTGATCAATGCCACTCTGTCGCCGGCAGCCTTAGTCTATGTTGTTGGTTGCACATCATCCAAACAAGCCTGGGAGGTCCTTGAAAAGCACTACTCTTCGAGCTCAAGAACCAACATCGTCAATTTGAAGTCAGATCTTCAATCAATAACCAAGAAGTCGGGTGAGTCAATCGATGATTATGTTAAACGAATCAAAGAACTCAAGGATAAATTAGCTAATGTTTCTGTTATTGTGGATGAAGAGGATATTCTTATCTATGCCTTAAATGGCTTACCTTCTATTTTTAACACTTTTCGCACATCTATGAGAACACGGTCACAATCGGTTACACTCGATGAGCTCCACGTCCTTCTAAAAGTAGAGGAGGCTGCTATTGAAAAAATCGAAGCAAGATGA

mRNA sequence

ATGCACAAGGAGTTAACGAGGACAACCAGGCAGAAATCAGACTGGAAGATGGACCTAAGAGGTGAAACCGACAAGTGGGACGGGCCAAGACCGAAGGGGTCGTCTGGTCTGGCTCCGTATGCCCTCCTACTTCCGTTTTCCGACTTAAGCATCGGAGGCGGTGTGGCTAGCACCACACCATTCTGCAGGTTTACAGTTTTGCAGGCCACGTCTTCCCCCTCATCTAAAAATTTACCGTTGGTGGCACGTGAAGGTCAGGCTCACAAGTTGTTTGGATTTATCGATGGCTCCACTAATTGCCCTCCAAAGACGGTTCCATCATCCACCACATTGTCCTCTACATCGACGGAGACTGCAACTGAAGCACCTCCTGCTCCAGTATCTTCTCAGATTAATCCACTTTATGAGGAGTGGGTTGCCAAAGATCAAGCTCTAATGACACTGATCAATGCCACTCTGTCGCCGGCAGCCTTAGTCTATGTTGTTGGTTGCACATCATCCAAACAAGCCTGGGAGGTCCTTGAAAAGCACTACTCTTCGAGCTCAAGAACCAACATCGTCAATTTGAAGTCAGATCTTCAATCAATAACCAAGAAGTCGGGTGAGTCAATCGATGATTATGTTAAACGAATCAAAGAACTCAAGGATAAATTAGCTAATGTTTCTGTTATTGTGGATGAAGAGGATATTCTTATCTATGCCTTAAATGGCTTACCTTCTATTTTTAACACTTTTCGCACATCTATGAGAACACGGTCACAATCGGTTACACTCGATGAGCTCCACGTCCTTCTAAAAGTAGAGGAGGCTGCTATTGAAAAAATCGAAGCAAGATGA

Coding sequence (CDS)

ATGCACAAGGAGTTAACGAGGACAACCAGGCAGAAATCAGACTGGAAGATGGACCTAAGAGGTGAAACCGACAAGTGGGACGGGCCAAGACCGAAGGGGTCGTCTGGTCTGGCTCCGTATGCCCTCCTACTTCCGTTTTCCGACTTAAGCATCGGAGGCGGTGTGGCTAGCACCACACCATTCTGCAGGTTTACAGTTTTGCAGGCCACGTCTTCCCCCTCATCTAAAAATTTACCGTTGGTGGCACGTGAAGGTCAGGCTCACAAGTTGTTTGGATTTATCGATGGCTCCACTAATTGCCCTCCAAAGACGGTTCCATCATCCACCACATTGTCCTCTACATCGACGGAGACTGCAACTGAAGCACCTCCTGCTCCAGTATCTTCTCAGATTAATCCACTTTATGAGGAGTGGGTTGCCAAAGATCAAGCTCTAATGACACTGATCAATGCCACTCTGTCGCCGGCAGCCTTAGTCTATGTTGTTGGTTGCACATCATCCAAACAAGCCTGGGAGGTCCTTGAAAAGCACTACTCTTCGAGCTCAAGAACCAACATCGTCAATTTGAAGTCAGATCTTCAATCAATAACCAAGAAGTCGGGTGAGTCAATCGATGATTATGTTAAACGAATCAAAGAACTCAAGGATAAATTAGCTAATGTTTCTGTTATTGTGGATGAAGAGGATATTCTTATCTATGCCTTAAATGGCTTACCTTCTATTTTTAACACTTTTCGCACATCTATGAGAACACGGTCACAATCGGTTACACTCGATGAGCTCCACGTCCTTCTAAAAGTAGAGGAGGCTGCTATTGAAAAAATCGAAGCAAGATGA

Protein sequence

MHKELTRTTRQKSDWKMDLRGETDKWDGPRPKGSSGLAPYALLLPFSDLSIGGGVASTTPFCRFTVLQATSSPSSKNLPLVAREGQAHKLFGFIDGSTNCPPKTVPSSTTLSSTSTETATEAPPAPVSSQINPLYEEWVAKDQALMTLINATLSPAALVYVVGCTSSKQAWEVLEKHYSSSSRTNIVNLKSDLQSITKKSGESIDDYVKRIKELKDKLANVSVIVDEEDILIYALNGLPSIFNTFRTSMRTRSQSVTLDELHVLLKVEEAAIEKIEAR

Homology

[Close]

BLAST of Lag0026824 vs. NCBI nr
Match: XP_008448007.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo])

HSP 1 Score: 235.3 bits (599), Expect = 6.2e-58
Identity = 128/189 (67.72%), Postives = 150/189 (79.37%), Query Frame = 0


Query: 86  QAHKLFGFIDGSTNCPPKTVPSSTTLSSTSTETATEAPPAPVSSQINPLYEEWVAKDQAL 145
           +AHKL+GFIDG+  CPP+T  S    SSTST      PP     Q NP YE+W+AKDQAL
Sbjct: 51  KAHKLYGFIDGTNPCPPRTNNS----SSTST-----VPP-----QSNPSYEDWIAKDQAL 110

Query: 146 MTLINATLSPAALVYVVGCTSSKQAWEVLEKHYSSSSRTNIVNLKSDLQSITKKSGESID 205
           MT+INATLSP AL YVVG TSSKQ W+VL K YSS SR+N+VNLKSDLQ+I KK  ESID
Sbjct: 111 MTVINATLSPEALAYVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESID 170

Query: 206 DYVKRIKELKDKLANVSVIVDEEDILIYALNGLPSIFNTFRTSMRTRSQSVTLDELHVLL 265
            Y+KRIKE+KDKLANVS  ++EED+LIYALNGLP+ +NTFRTSMRTRSQ VT +ELHVLL
Sbjct: 171 AYIKRIKEIKDKLANVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLL 225

Query: 266 KVEEAAIEK 275
           + EE+A+ K
Sbjct: 231 RAEESALAK 225

[Close]

BLAST of Lag0026824 vs. NCBI nr
Match: XP_008448008.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo])

HSP 1 Score: 235.3 bits (599), Expect = 6.2e-58
Identity = 128/189 (67.72%), Postives = 150/189 (79.37%), Query Frame = 0


Query: 86  QAHKLFGFIDGSTNCPPKTVPSSTTLSSTSTETATEAPPAPVSSQINPLYEEWVAKDQAL 145
           +AHKL+GFIDG+  CPP+T  S    SSTST      PP     Q NP YE+W+AKDQAL
Sbjct: 51  KAHKLYGFIDGTNPCPPRTNNS----SSTST-----VPP-----QSNPSYEDWIAKDQAL 110

Query: 146 MTLINATLSPAALVYVVGCTSSKQAWEVLEKHYSSSSRTNIVNLKSDLQSITKKSGESID 205
           MT+INATLSP AL YVVG TSSKQ W+VL K YSS SR+N+VNLKSDLQ+I KK  ESID
Sbjct: 111 MTVINATLSPEALAYVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESID 170

Query: 206 DYVKRIKELKDKLANVSVIVDEEDILIYALNGLPSIFNTFRTSMRTRSQSVTLDELHVLL 265
            Y+KRIKE+KDKLANVS  ++EED+LIYALNGLP+ +NTFRTSMRTRSQ VT +ELHVLL
Sbjct: 171 AYIKRIKEIKDKLANVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLL 225

Query: 266 KVEEAAIEK 275
           + EE+A+ K
Sbjct: 231 RAEESALAK 225

[Close]

BLAST of Lag0026824 vs. NCBI nr
Match: KAA0049700.1 (T4.5 [Cucumis melo var. makuwa] >TYK12172.1 T4.5 [Cucumis melo var. makuwa])

HSP 1 Score: 235.3 bits (599), Expect = 6.2e-58
Identity = 128/189 (67.72%), Postives = 150/189 (79.37%), Query Frame = 0


Query: 86  QAHKLFGFIDGSTNCPPKTVPSSTTLSSTSTETATEAPPAPVSSQINPLYEEWVAKDQAL 145
           +AHKL+GFIDG+  CPP+T  S    SSTST      PP     Q NP YE+W+AKDQAL
Sbjct: 51  KAHKLYGFIDGTNPCPPRTNNS----SSTST-----VPP-----QSNPSYEDWIAKDQAL 110

Query: 146 MTLINATLSPAALVYVVGCTSSKQAWEVLEKHYSSSSRTNIVNLKSDLQSITKKSGESID 205
           MT+INATLSP AL YVVG TSSKQ W+VL K YSS SR+N+VNLKSDLQ+I KK  ESID
Sbjct: 111 MTVINATLSPEALAYVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESID 170

Query: 206 DYVKRIKELKDKLANVSVIVDEEDILIYALNGLPSIFNTFRTSMRTRSQSVTLDELHVLL 265
            Y+KRIKE+KDKLANVS  ++EED+LIYALNGLP+ +NTFRTSMRTRSQ VT +ELHVLL
Sbjct: 171 AYIKRIKEIKDKLANVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLL 225

Query: 266 KVEEAAIEK 275
           + EE+A+ K
Sbjct: 231 RAEESALAK 225

[Close]

BLAST of Lag0026824 vs. NCBI nr
Match: XP_016900446.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X1 [Cucumis melo])

HSP 1 Score: 235.3 bits (599), Expect = 6.2e-58
Identity = 128/189 (67.72%), Postives = 150/189 (79.37%), Query Frame = 0


Query: 86  QAHKLFGFIDGSTNCPPKTVPSSTTLSSTSTETATEAPPAPVSSQINPLYEEWVAKDQAL 145
           +AHKL+GFIDG+  CPP+T  S    SSTST      PP     Q NP YE+W+AKDQAL
Sbjct: 51  KAHKLYGFIDGTNPCPPRTNNS----SSTST-----VPP-----QSNPSYEDWIAKDQAL 110

Query: 146 MTLINATLSPAALVYVVGCTSSKQAWEVLEKHYSSSSRTNIVNLKSDLQSITKKSGESID 205
           MT+INATLSP AL YVVG TSSKQ W+VL K YSS SR+N+VNLKSDLQ+I KK  ESID
Sbjct: 111 MTVINATLSPEALAYVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESID 170

Query: 206 DYVKRIKELKDKLANVSVIVDEEDILIYALNGLPSIFNTFRTSMRTRSQSVTLDELHVLL 265
            Y+KRIKE+KDKLANVS  ++EED+LIYALNGLP+ +NTFRTSMRTRSQ VT +ELHVLL
Sbjct: 171 AYIKRIKEIKDKLANVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLL 225

Query: 266 KVEEAAIEK 275
           + EE+A+ K
Sbjct: 231 RAEESALAK 225

[Close]

BLAST of Lag0026824 vs. NCBI nr
Match: KAE8645659.1 (hypothetical protein Csa_020439 [Cucumis sativus])

HSP 1 Score: 233.8 bits (595), Expect = 1.8e-57
Identity = 124/189 (65.61%), Postives = 146/189 (77.25%), Query Frame = 0


Query: 86  QAHKLFGFIDGSTNCPPKTVPSSTTLSSTSTETATEAPPAPVSSQINPLYEEWVAKDQAL 145
           +AHKLFGF+DG+  CP            TS  T +  PP     Q NPLYE+W+AKDQAL
Sbjct: 51  KAHKLFGFVDGTNPCP-----------QTSPSTTSTVPP-----QTNPLYEDWIAKDQAL 110

Query: 146 MTLINATLSPAALVYVVGCTSSKQAWEVLEKHYSSSSRTNIVNLKSDLQSITKKSGESID 205
           MT+INATLSP AL YVVG TSSKQ W+VL K YSS SR+N+VNLKSDLQ+I KK  ESID
Sbjct: 111 MTVINATLSPEALAYVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESID 170

Query: 206 DYVKRIKELKDKLANVSVIVDEEDILIYALNGLPSIFNTFRTSMRTRSQSVTLDELHVLL 265
            Y+KRIKE+KDKLANVS  ++EED+LIYALNGLP+ +NTFRTSMRTRSQ VT +ELHVLL
Sbjct: 171 AYIKRIKEIKDKLANVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLL 223

Query: 266 KVEEAAIEK 275
           + EE+A+ K
Sbjct: 231 RAEESALAK 223

[Close]

BLAST of Lag0026824 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.3e-05
Identity = 37/141 (26.24%), Postives = 67/141 (47.52%), Query Frame = 0


Query: 136 EEWVAKDQALMTLINATLSPAALVYVVGCTSSKQAWEVLEKHYSSSSRTNIVNLKSDLQS 195
           E+W   D+   + I   LS   +  ++   +++  W  LE  Y S + TN + LK  L +
Sbjct: 50  EDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYA 109

Query: 196 ITKKSGESIDDYVKRIKELKDKLANVSVIVDEEDILIYALNGLPSIFNTFRTSMRTRSQS 255
           +    G +   ++     L  +LAN+ V ++EED  I  LN LPS ++   T++     +
Sbjct: 110 LHMSEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTT 169

Query: 256 VTLDELHVLLKVEEAAIEKIE 277
           + L ++   L + E   +K E
Sbjct: 170 IELKDVTSALLLNEKMRKKPE 190

[Close]

BLAST of Lag0026824 vs. ExPASy TrEMBL
Match: A0A5D3CLI6 (T4.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001120 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 3.0e-58
Identity = 128/189 (67.72%), Postives = 150/189 (79.37%), Query Frame = 0


Query: 86  QAHKLFGFIDGSTNCPPKTVPSSTTLSSTSTETATEAPPAPVSSQINPLYEEWVAKDQAL 145
           +AHKL+GFIDG+  CPP+T  S    SSTST      PP     Q NP YE+W+AKDQAL
Sbjct: 51  KAHKLYGFIDGTNPCPPRTNNS----SSTST-----VPP-----QSNPSYEDWIAKDQAL 110

Query: 146 MTLINATLSPAALVYVVGCTSSKQAWEVLEKHYSSSSRTNIVNLKSDLQSITKKSGESID 205
           MT+INATLSP AL YVVG TSSKQ W+VL K YSS SR+N+VNLKSDLQ+I KK  ESID
Sbjct: 111 MTVINATLSPEALAYVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESID 170

Query: 206 DYVKRIKELKDKLANVSVIVDEEDILIYALNGLPSIFNTFRTSMRTRSQSVTLDELHVLL 265
            Y+KRIKE+KDKLANVS  ++EED+LIYALNGLP+ +NTFRTSMRTRSQ VT +ELHVLL
Sbjct: 171 AYIKRIKEIKDKLANVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLL 225

Query: 266 KVEEAAIEK 275
           + EE+A+ K
Sbjct: 231 RAEESALAK 225

[Close]

BLAST of Lag0026824 vs. ExPASy TrEMBL
Match: A0A1S3BI58 (uncharacterized protein LOC103490319 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 3.0e-58
Identity = 128/189 (67.72%), Postives = 150/189 (79.37%), Query Frame = 0


Query: 86  QAHKLFGFIDGSTNCPPKTVPSSTTLSSTSTETATEAPPAPVSSQINPLYEEWVAKDQAL 145
           +AHKL+GFIDG+  CPP+T  S    SSTST      PP     Q NP YE+W+AKDQAL
Sbjct: 51  KAHKLYGFIDGTNPCPPRTNNS----SSTST-----VPP-----QSNPSYEDWIAKDQAL 110

Query: 146 MTLINATLSPAALVYVVGCTSSKQAWEVLEKHYSSSSRTNIVNLKSDLQSITKKSGESID 205
           MT+INATLSP AL YVVG TSSKQ W+VL K YSS SR+N+VNLKSDLQ+I KK  ESID
Sbjct: 111 MTVINATLSPEALAYVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESID 170

Query: 206 DYVKRIKELKDKLANVSVIVDEEDILIYALNGLPSIFNTFRTSMRTRSQSVTLDELHVLL 265
            Y+KRIKE+KDKLANVS  ++EED+LIYALNGLP+ +NTFRTSMRTRSQ VT +ELHVLL
Sbjct: 171 AYIKRIKEIKDKLANVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLL 225

Query: 266 KVEEAAIEK 275
           + EE+A+ K
Sbjct: 231 RAEESALAK 225

[Close]

BLAST of Lag0026824 vs. ExPASy TrEMBL
Match: A0A1S4DWT9 (uncharacterized protein LOC103490319 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 3.0e-58
Identity = 128/189 (67.72%), Postives = 150/189 (79.37%), Query Frame = 0


Query: 86  QAHKLFGFIDGSTNCPPKTVPSSTTLSSTSTETATEAPPAPVSSQINPLYEEWVAKDQAL 145
           +AHKL+GFIDG+  CPP+T  S    SSTST      PP     Q NP YE+W+AKDQAL
Sbjct: 51  KAHKLYGFIDGTNPCPPRTNNS----SSTST-----VPP-----QSNPSYEDWIAKDQAL 110

Query: 146 MTLINATLSPAALVYVVGCTSSKQAWEVLEKHYSSSSRTNIVNLKSDLQSITKKSGESID 205
           MT+INATLSP AL YVVG TSSKQ W+VL K YSS SR+N+VNLKSDLQ+I KK  ESID
Sbjct: 111 MTVINATLSPEALAYVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESID 170

Query: 206 DYVKRIKELKDKLANVSVIVDEEDILIYALNGLPSIFNTFRTSMRTRSQSVTLDELHVLL 265
            Y+KRIKE+KDKLANVS  ++EED+LIYALNGLP+ +NTFRTSMRTRSQ VT +ELHVLL
Sbjct: 171 AYIKRIKEIKDKLANVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLL 225

Query: 266 KVEEAAIEK 275
           + EE+A+ K
Sbjct: 231 RAEESALAK 225

[Close]

BLAST of Lag0026824 vs. ExPASy TrEMBL
Match: A0A1S3BIR3 (uncharacterized protein LOC103490319 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 3.0e-58
Identity = 128/189 (67.72%), Postives = 150/189 (79.37%), Query Frame = 0


Query: 86  QAHKLFGFIDGSTNCPPKTVPSSTTLSSTSTETATEAPPAPVSSQINPLYEEWVAKDQAL 145
           +AHKL+GFIDG+  CPP+T  S    SSTST      PP     Q NP YE+W+AKDQAL
Sbjct: 51  KAHKLYGFIDGTNPCPPRTNNS----SSTST-----VPP-----QSNPSYEDWIAKDQAL 110

Query: 146 MTLINATLSPAALVYVVGCTSSKQAWEVLEKHYSSSSRTNIVNLKSDLQSITKKSGESID 205
           MT+INATLSP AL YVVG TSSKQ W+VL K YSS SR+N+VNLKSDLQ+I KK  ESID
Sbjct: 111 MTVINATLSPEALAYVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESID 170

Query: 206 DYVKRIKELKDKLANVSVIVDEEDILIYALNGLPSIFNTFRTSMRTRSQSVTLDELHVLL 265
            Y+KRIKE+KDKLANVS  ++EED+LIYALNGLP+ +NTFRTSMRTRSQ VT +ELHVLL
Sbjct: 171 AYIKRIKEIKDKLANVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLL 225

Query: 266 KVEEAAIEK 275
           + EE+A+ K
Sbjct: 231 RAEESALAK 225

[Close]

BLAST of Lag0026824 vs. ExPASy TrEMBL
Match: A0A6J1DYF1 (uncharacterized protein LOC111025709 OS=Momordica charantia OX=3673 GN=LOC111025709 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 9.0e-55
Identity = 125/190 (65.79%), Postives = 150/190 (78.95%), Query Frame = 0


Query: 86  QAHKLFGFIDGSTNCPPK-TVPSSTTLSSTSTETATEAPPAPVSSQINPLYEEWVAKDQA 145
           +AHKL+GFIDGST  P K  V SS +LSSTS          P+   +NP + +W+AKD A
Sbjct: 11  KAHKLYGFIDGSTPKPAKFLVSSSDSLSSTS----------PI---VNPAFSDWIAKDHA 70

Query: 146 LMTLINATLSPAALVYVVGCTSSKQAWEVLEKHYSSSSRTNIVNLKSDLQSITKKSGESI 205
           LMTL+NATLSP+AL Y+VGC SS+Q W+ L K+YSSSSRTN+VNLKS+LQSI+KK GESI
Sbjct: 71  LMTLLNATLSPSALAYMVGCDSSQQVWQTLVKYYSSSSRTNVVNLKSNLQSISKKPGESI 130

Query: 206 DDYVKRIKELKDKLANVSVIVDEEDILIYALNGLPSIFNTFRTSMRTRSQSVTLDELHVL 265
           D Y++RIKELKDKLANVSV+VD ED+LIY LNGLP  FN F TSM TRSQSV+ +EL+VL
Sbjct: 131 DLYMQRIKELKDKLANVSVLVDNEDLLIYTLNGLPPEFNAFCTSMCTRSQSVSFEELYVL 187

Query: 266 LKVEEAAIEK 275
           L  EEAAI+K
Sbjct: 191 LVYEEAAIDK 187

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BLAST of Lag0026824 vs. TAIR 10
Match: AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.1 bits (118), Expect = 3.4e-06
Identity = 35/139 (25.18%), Postives = 71/139 (51.08%), Query Frame = 0


Query: 138 WVAKDQALMTLINATLSPAALV-YVVGCTSSKQAWEVLEKHYSSSSRTNIVNLKSDLQSI 197
           W  +D  +   +  TL+P       V  ++S+  W  ++  + ++     + L S+L+  
Sbjct: 65  WQKRDGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELR-- 124

Query: 198 TKKSGE-SIDDYVKRIKELKDKLANVSVIVDEEDILIYALNGLPSIFNTFRTSMRTRSQS 257
           TK  G+  + DY +++K+L D L NV V V + ++++Y LNGL   F+     ++ R   
Sbjct: 125 TKDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHRQPF 184

Query: 258 VTLDELHVLLKVEEAAIEK 275
            + D+   +L+ EE  +++
Sbjct: 185 PSFDDAATMLQEEEDRLKR 201

The following BLAST results are available for this feature:

BLAST of Lag0026824 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448007.1	6.2e-58	67.72	PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]	[more]
XP_008448008.1	6.2e-58	67.72	PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo]	[more]
KAA0049700.1	6.2e-58	67.72	T4.5 [Cucumis melo var. makuwa] >TYK12172.1 T4.5 [Cucumis melo var. makuwa]	[more]
XP_016900446.1	6.2e-58	67.72	PREDICTED: uncharacterized protein LOC103490319 isoform X1 [Cucumis melo]	[more]
KAE8645659.1	1.8e-57	65.61	hypothetical protein Csa_020439 [Cucumis sativus]	[more]

BLAST of Lag0026824 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.3e-05	26.24	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Lag0026824 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CLI6	3.0e-58	67.72	T4.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001120 PE=4 SV=...	[more]
A0A1S3BI58	3.0e-58	67.72	uncharacterized protein LOC103490319 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4DWT9	3.0e-58	67.72	uncharacterized protein LOC103490319 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3BIR3	3.0e-58	67.72	uncharacterized protein LOC103490319 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1DYF1	9.0e-55	65.79	uncharacterized protein LOC111025709 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]

BLAST of Lag0026824 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G34070.1	3.4e-06	25.18	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 258..278
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 138..270 e-value: 1.8E-26 score: 92.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..127
None	No IPR available	PANTHER	PTHR34222:SF48	SUBFAMILY NOT NAMED	coord: 86..268
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 86..268

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0026824.1	Lag0026824.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding