Lag0026778 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0026778
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionProlamin_like domain-containing protein
Locationchr10: 41790814 .. 41791212 (-)
RNA-Seq ExpressionLag0026778
SyntenyLag0026778
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAAGGGAACAAGCACAATGGGAGCAATAGTGATTCTCTTGTTGGCAATAAACTTGGCAGCTTTAGCTCAACCTTCAATGGCAGATGAGGACTACACTTCACCGATATGGAATGGATGGGTAGATGAGGATAGAGGATACACACTACGACCATGTTTGGATATGATGAAGAGTGCAAAATGTCAGGTGGAACTTTACAATTATTACTTCAATATAGGTAAAAAGGAATTTGATCTAAATTGTTGCGTCTTCGTCAAAATCATGGGGAAGAGTTGCGCTGAGGCGTTTACTGTTTGGTTTGAGTTTCCTAGCTACAAAGCCTACAAGCCTAATCCTATGAAGCTTTACACAAATTGTGTTAGAAGACTTGATGCTCTCTCACCCGCACCATTTTAA

mRNA sequence

ATGGCAAAGGGAACAAGCACAATGGGAGCAATAGTGATTCTCTTGTTGGCAATAAACTTGGCAGCTTTAGCTCAACCTTCAATGGCAGATGAGGACTACACTTCACCGATATGGAATGGATGGGTAGATGAGGATAGAGGATACACACTACGACCATGTTTGGATATGATGAAGAGTGCAAAATGTCAGGTGGAACTTTACAATTATTACTTCAATATAGGTAAAAAGGAATTTGATCTAAATTGTTGCGTCTTCGTCAAAATCATGGGGAAGAGTTGCGCTGAGGCGTTTACTGTTTGGTTTGAGTTTCCTAGCTACAAAGCCTACAAGCCTAATCCTATGAAGCTTTACACAAATTGTGTTAGAAGACTTGATGCTCTCTCACCCGCACCATTTTAA

Coding sequence (CDS)

ATGGCAAAGGGAACAAGCACAATGGGAGCAATAGTGATTCTCTTGTTGGCAATAAACTTGGCAGCTTTAGCTCAACCTTCAATGGCAGATGAGGACTACACTTCACCGATATGGAATGGATGGGTAGATGAGGATAGAGGATACACACTACGACCATGTTTGGATATGATGAAGAGTGCAAAATGTCAGGTGGAACTTTACAATTATTACTTCAATATAGGTAAAAAGGAATTTGATCTAAATTGTTGCGTCTTCGTCAAAATCATGGGGAAGAGTTGCGCTGAGGCGTTTACTGTTTGGTTTGAGTTTCCTAGCTACAAAGCCTACAAGCCTAATCCTATGAAGCTTTACACAAATTGTGTTAGAAGACTTGATGCTCTCTCACCCGCACCATTTTAA

Protein sequence

MAKGTSTMGAIVILLLAINLAALAQPSMADEDYTSPIWNGWVDEDRGYTLRPCLDMMKSAKCQVELYNYYFNIGKKEFDLNCCVFVKIMGKSCAEAFTVWFEFPSYKAYKPNPMKLYTNCVRRLDALSPAPF
Homology
BLAST of Lag0026778 vs. NCBI nr
Match: KAG6578867.1 (hypothetical protein SDJN03_23315, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 213.0 bits (541), Expect = 1.6e-51
Identity = 97/125 (77.60%), Postives = 106/125 (84.80%), Query Frame = 0

Query: 8   MGAIVILLLAINLAALAQPSMADEDYTSPIWNGWVDEDRGYTLRPCLDMMKSAKCQVELY 67
           MGA+VILLLAINLA LAQPS AD+DY SPIW+ WVDEDRG  LRPCLDMMKSAKCQVELY
Sbjct: 1   MGAMVILLLAINLAFLAQPSTADDDYNSPIWDRWVDEDRGINLRPCLDMMKSAKCQVELY 60

Query: 68  NYYFNIGKKEFDLNCCVFVKIMGKSCAEAFTVWFEFPSYKAYKPNPMKLYTNCVRRLDAL 127
           NYYFNI KKE DLNCCVFVK+MGK CA AF  WF FP ++ ++ NPMK+Y NCV RLDAL
Sbjct: 61  NYYFNISKKELDLNCCVFVKVMGKRCARAFAGWFRFPEFEVFELNPMKVYKNCVGRLDAL 120

Query: 128 SPAPF 133
            PAPF
Sbjct: 121 PPAPF 125

BLAST of Lag0026778 vs. NCBI nr
Match: KAA0046835.1 (hypothetical protein E6C27_scaffold216G001330 [Cucumis melo var. makuwa] >KAA0046840.1 hypothetical protein E6C27_scaffold216G001400 [Cucumis melo var. makuwa] >KAA0065932.1 hypothetical protein E6C27_scaffold10942G00010 [Cucumis melo var. makuwa] >TYK04499.1 hypothetical protein E5676_scaffold409G001130 [Cucumis melo var. makuwa] >TYK14838.1 hypothetical protein E5676_scaffold6575G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 212.2 bits (539), Expect = 2.7e-51
Identity = 94/125 (75.20%), Postives = 105/125 (84.00%), Query Frame = 0

Query: 8   MGAIVILLLAINLAALAQPSMADEDYTSPIWNGWVDEDRGYTLRPCLDMMKSAKCQVELY 67
           M AIVILL AINL+ L Q S  DEDY SPIW+GWVDEDRGYTLRPCLD M+SAKCQVELY
Sbjct: 1   MRAIVILLFAINLSKLVQSSGVDEDYNSPIWDGWVDEDRGYTLRPCLDRMRSAKCQVELY 60

Query: 68  NYYFNIGKKEFDLNCCVFVKIMGKSCAEAFTVWFEFPSYKAYKPNPMKLYTNCVRRLDAL 127
           NYYFNI KKE DLNCCVFVK+MGK CA+AFT W++FP  + Y+PNPMK+Y NC+ RLDA 
Sbjct: 61  NYYFNISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNNCITRLDAP 120

Query: 128 SPAPF 133
            PAPF
Sbjct: 121 PPAPF 125

BLAST of Lag0026778 vs. NCBI nr
Match: KAA0046841.1 (hypothetical protein E6C27_scaffold216G001410 [Cucumis melo var. makuwa] >TYK04493.1 hypothetical protein E5676_scaffold409G001070 [Cucumis melo var. makuwa])

HSP 1 Score: 206.1 bits (523), Expect = 1.9e-49
Identity = 97/135 (71.85%), Postives = 107/135 (79.26%), Query Frame = 0

Query: 1   MAKGTSTMGAIV-ILLLAINLAALAQPSMA--DEDYTSPIWNGWVDEDRGYTLRPCLDMM 60
           MA GT+T+G I+ ILLLA+NLA L  PSMA  D+DY SPIWNGWVDEDR   LRPCLDMM
Sbjct: 1   MANGTNTVGGILTILLLAVNLAILVHPSMADVDDDYNSPIWNGWVDEDRASNLRPCLDMM 60

Query: 61  KSAKCQVELYNYYFNIGKKEFDLNCCVFVKIMGKSCAEAFTVWFEFPSYKAYKPNPMKLY 120
           KSAKCQV+LYNYYFNI KKE DL CCVFVKIMGK CA AF  W+EFP  + Y+PNPM +Y
Sbjct: 61  KSAKCQVQLYNYYFNISKKELDLQCCVFVKIMGKYCAHAFAGWYEFPGLEVYEPNPMIVY 120

Query: 121 TNCVRRLDALSPAPF 133
            NCV RL AL P PF
Sbjct: 121 NNCVGRLQALPPTPF 135

BLAST of Lag0026778 vs. NCBI nr
Match: KAG6575249.1 (hypothetical protein SDJN03_25888, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 185.7 bits (470), Expect = 2.7e-43
Identity = 81/129 (62.79%), Postives = 101/129 (78.29%), Query Frame = 0

Query: 1   MAKGTSTMGAIVILLLAINLAALAQPSMADEDYTSPIWNGWVDEDRGYTLRPCLDMMKSA 60
           MAK TST+GA+V+LLLA+NL    + + AD DY SPIW+ W+DEDR Y LRPCL++MKSA
Sbjct: 1   MAKETSTLGAMVVLLLAVNLQGFVRVTSADVDYNSPIWDRWLDEDRAYYLRPCLNLMKSA 60

Query: 61  KCQVELYNYYFNIGKKEFDLNCCVFVKIMGKSCAEAFTVWFEFPSYKAYKPNPMKLYTNC 120
           KCQV+LYN YFN+ K+E DLNCCVFVK+MGK+CA  F  WF++P ++ YKPNPM LY  C
Sbjct: 61  KCQVQLYNNYFNLSKEELDLNCCVFVKVMGKNCALDFAGWFDYPIFEVYKPNPMNLYKRC 120

Query: 121 VRRLDALSP 130
           V RL +  P
Sbjct: 121 VARLSSSIP 129

BLAST of Lag0026778 vs. NCBI nr
Match: KAE8646662.1 (hypothetical protein Csa_004797, partial [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 2.1e-40
Identity = 77/111 (69.37%), Postives = 90/111 (81.08%), Query Frame = 0

Query: 5   TSTMGAIVILLLAINLAALAQPSMADEDYTSPIWNGWVDEDRGYTLRPCLDMMKSAKCQV 64
           T+ M A++ILL  INLA L QP   DEDY S IWN W+DEDR +TLRPCLD M+SAKCQV
Sbjct: 31  TNAMRAMLILLSTINLAKLVQPYGVDEDYNSSIWNDWLDEDRAFTLRPCLDRMRSAKCQV 90

Query: 65  ELYNYYFNIGKKEFDLNCCVFVKIMGKSCAEAFTVWFEFPSYKAYKPNPMK 116
           ELYNYYFNI K+E DLNCCVFVK+MGK CA+AFT W++FP  + Y+PNPMK
Sbjct: 91  ELYNYYFNISKEELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMK 141

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6578867.11.6e-5177.60hypothetical protein SDJN03_23315, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0046835.12.7e-5175.20hypothetical protein E6C27_scaffold216G001330 [Cucumis melo var. makuwa] >KAA004... [more]
KAA0046841.11.9e-4971.85hypothetical protein E6C27_scaffold216G001410 [Cucumis melo var. makuwa] >TYK044... [more]
KAG6575249.12.7e-4362.79hypothetical protein SDJN03_25888, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8646662.12.1e-4069.37hypothetical protein Csa_004797, partial [Cucumis sativus][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008502Prolamin-like domainPFAMPF05617Prolamin_likecoord: 53..120
e-value: 9.3E-6
score: 25.7

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0026778.1Lag0026778.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0110165 cellular anatomical entity