Lag0026772 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0026772
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Fra a 1-associated protein
Location	chr10: 41724341 .. 41728094 (-)
RNA-Seq Expression	Lag0026772
Synteny	Lag0026772

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATGGGTCTGGAGAGACGACGCCGGCGAATTGGATTCACCCGCCGACGACAATAATTCAAGCCCCTGGTCCTCCGGCGATCGGTGTTCGACCAGAAAGGTGGTGAAGTCGCAGTGCAAGACCGAGGAGGTCGAGCCCGGAAAATTCGTCAGGAAGTGCGAGAGAACCGAGGAGATTCTCAGAGACTGCATCGGAAGGTATGTGCATGTGCTTTTCTCTAATTTGTGTTGTCCTGTGGCAATTTATTTTAACCTAACGATTGTTGTCTTTCGATTTAAGAACTCTGTTTTCTGCAGTAGAGTGATGATAAGAAAATTGGTTCATTCTGTTTGATTTTGGGAGGAAGAAATTATTGAACTTAGTTTTCCATTTCTGTGTTGGTTTGTAATTGTATCGATTTGGAATCAAATGGGTGTCTCTCAGTGTTCCACATGGTTGTTCCTAAATCTGTATTCTTCTTTATAGCTTATGGATATGCCACACCACAGTTATAAATTTAGCAGTATATTGTGAAAGGCAAACGCTGATTCCTGCGACTTGTTAAGTGAACTTCTGTTTGATGCGTTGAACTACGGAGCCCTTTTGGGGTTTATTTTCTGATATAATTGCCATGAATGGTTGTTTGAGTAGAATCTTGGAGGGATGGACATTGAAATTGGTATAGTAGATTCCAGGCTTGCCGTTCAATATGTAAGTGATGATCTTTCGTGGGCTATTTCTGTTGAAGGTTAAAGAATCATGGACCTACCCAATAATTTTGATCGCTTTGGTATTTGGCCAAAATAACCAACACAGAAGAAGATTGATATATTTTCCTTGGTTAATTCACACTCTCACTATCTTCTTTAATTCATGTGCACTTTCACTTTTGGCTTCCTTTTGTTTATCTTTCTTCCAAATTATGATAACTCATTAAATAGAAAATTTAGATGCTTGCAAAGTTCCCAAAAAAAATCAAAATCTCAGCACCCATTTAACATTTCATCCTAATAATTGTCAAAGTTTCTCTGATGGCTTATATTCTTAAAGCTCATCGTCGAAAGGAATATGAAAATTCTATAGTGTCCCACGAAGGGACCCAAAGTTTTCACTTTTTTAGCTACTGAATAAATGTTATTAACATTCTTTTTTCCTAAAGTTTATGGATTTTCATAATTTGGAAAAAACAAGAATAAGAGGAAGAAACAGATGAATGAAGGGGAAAAAAGAAAAGGGAGTAACCGTTTTATTATTTTTTTTAAAAAAACAAAGAAACAAACTTCTGGGAATTGGAAGACAAGGAGAATGAGAGAGATGAAGGGGCATGTGAAAGTAGAGGTTTGGAACATGTTTTTTCAATCCTTTCTTAATTGAGGTGCAACTTCTAAACAATTAGGGTCAGAGAATATGGCTGAGATCATAGACTAGGATTCCTTCTCTTTTAAATCTCATCAGGGTGTGATATAGAAAGGCAAGTTGAGGAAAAGATGGTACTTGGATGGAAAATATGAAGATGACTGAGGAAGGCATTTCCTTTTACTGCAGATGTGCTGGCTGGATGTTTGATGGTTGAATGACATGCTTGGAAAACATTGGGCAGTGCCATGAGCCTCTTGAATCCATATTTTGGAAAATAGATTGATTAGTAGAGTTGGCCTTGGTGTGTAGGCAGCCCTTAAGAAGGATGAACATTAGAAACCAAAAAGGCAGGTTTTGTCAGAAGAAGCTATATGGCTATCAGTAAACAACAATTGGTGCAAAGTTAAGACTTTTCACATGTAAGCTTAATGAGGGGCTTTTTCTCTGCTATGTGCATTAGTTCCTAGACAGTACTAATACTTGACTGTCAAATGTATTGGTCAGAATGATGGTTTTCTTTGTAGTTCATTAGGAGGTAATGTCCTTTTGGTTTTCTTCTCAAGAGGAAAAAAAAACATTGTATAATATGTGGAAAAAATTTAAGGAACCAATTTGTAGGTAGTGAACCTGTCAACCATTAGATAAACTATGGGCTTAAGCTGTCAATTATTCCTAGTATATTCATCAATCGGTTGAATTATTATTCCATTATTATTTATTGGGCCCCTCCACTAGTATAAGACACGCATCTGCTTATTACTTTTAAGCAGAATTATGGTTTTTATTTTTAGTGACGATTACACGTCTCACGATCAAGGATAATTGGGATTTTTTTCTTATTTGACTTTGTTTAGCTCATGAAGGGAGGTAAAAGTATTCATTTTGTTGGGGTTTTCTTCTTTGGTATAAAATATCCTACTGGTAATATGATTCATGTTACTTTTATGATTCTGTTACACTCTAATACTCATCTATACAATTAGGTATTTAGCCAAAAGAATAAATAAGTACTACCAGTTGTTATTTAGCAAAAATAACAGATTTTTAATGTTGTACATGGTTGCAAACTTCAAAATAATACTTTTCTTTTAATCTGAAGTTTTGTTACATTGAGGTTGCATTAATTGCACGGAAGCTCAAGTTGGAAAATATAGTAATCTTTTGCTGACAAAGAAATCATGCAGCCTTCTACTGCAGAAACTGCAGTTTCTGAGCAAAGGATCATGATTTTTTTTTTTTTTTTTTTTGAGAGAGAGAACACTGTCACACGCCTAATGAGACCTGAGAATTCTGAAGCTTCGAAAGCTTTATAGACCAATAATCATATGCTATTTTAAAGGAATGATTGGAGGGACCTGGGGTTTGGCAATGCATGTACCAGCAGAAAGCCTTAGATTTGATTTATTGTAAGAGGATGAAGTGATATGGTATTGGAGCTTGGAGTGAGGAAACTCTCTTCATAATACTATATCCGTGGTTTGGCACTTCCCTAAGCCTGTTTTTTGTTTGGCTATGTTCTGAGAAACCGAATTTTCATATCTACAAAAAGAGGACATACAAAAAACAAGCCCACCAGCGAGAAAACCTACAATAAGATGAATCCAAAAGAATGAGCCCCAACTGATAACTACAGAAAACTCGATTATGGAACGCCCAAAGAAACGATTTAAATCTAATAGTATCCTAAAGATCCTCGACCTCACATACCCTAATAGGATTGTTTCCTTGTATAGACCATGTTGTAATATTATGGACATGTATCATTATAGAACGCAAAGTGGAAAATTTATTTGTAAAAGAAGTACATGCAAGCAAGTACTTCCCAGCCCCTCTAATTACTCATCTTCCCTACTTATAAAAACTACTTGCTTCTGGTTAGTTAATTTAGTCCACTAAGTTTCTTCACTGCTCTAACTATTCTCCCCATTTAGAGCCTTCACATTTCTTTTTTGCTTTCCTTTCCTCACATAAAGTGTGCTGAGGAGGGGGCATATCAATGATATGAATTAGATGATTAAATAACAGATCATTTCTGTACAGGCCAGTAGAAGTGATACAGTCCAACAAGGAATTTACAGAAGAGGATGTTACGAATCAGGTGATTAATGGGTCATTCGCGTCGGGATCATCAGAACATCAACCGTTTGATTTCCCTGGGCTCCGTAGTGATATTGAAGCCATCGAGCACAGTATATTCGGGAGCATGAAGGGGTTCTTTGAAGCAGCTGAAGAGATTAAGAATGGTTTCTTTGGTTCTCTCAGAGATCAACCCCTATTCAACAGAGAGTCTTCTTCCTCTCCATCAATGAGACGAGGAATACCCATCGAAGATCATGAGCCAGGGCTCTTCTCTAAACCGAACGAGCCCGATTCTGGTCACGTAGACCTATCTGGATTGGCCAGGGATGTTTGA

mRNA sequence

ATGGGATGGGTCTGGAGAGACGACGCCGGCGAATTGGATTCACCCGCCGACGACAATAATTCAAGCCCCTGGTCCTCCGGCGATCGGTGTTCGACCAGAAAGGTGGTGAAGTCGCAGTGCAAGACCGAGGAGGTCGAGCCCGGAAAATTCGTCAGGAAGTGCGAGAGAACCGAGGAGATTCTCAGAGACTGCATCGGAAGGCCAGTAGAAGTGATACAGTCCAACAAGGAATTTACAGAAGAGGATGTTACGAATCAGGTGATTAATGGGTCATTCGCGTCGGGATCATCAGAACATCAACCGTTTGATTTCCCTGGGCTCCGTAGTGATATTGAAGCCATCGAGCACAGTATATTCGGGAGCATGAAGGGGTTCTTTGAAGCAGCTGAAGAGATTAAGAATGGTTTCTTTGGTTCTCTCAGAGATCAACCCCTATTCAACAGAGAGTCTTCTTCCTCTCCATCAATGAGACGAGGAATACCCATCGAAGATCATGAGCCAGGGCTCTTCTCTAAACCGAACGAGCCCGATTCTGGTCACGTAGACCTATCTGGATTGGCCAGGGATGTTTGA

Coding sequence (CDS)

ATGGGATGGGTCTGGAGAGACGACGCCGGCGAATTGGATTCACCCGCCGACGACAATAATTCAAGCCCCTGGTCCTCCGGCGATCGGTGTTCGACCAGAAAGGTGGTGAAGTCGCAGTGCAAGACCGAGGAGGTCGAGCCCGGAAAATTCGTCAGGAAGTGCGAGAGAACCGAGGAGATTCTCAGAGACTGCATCGGAAGGCCAGTAGAAGTGATACAGTCCAACAAGGAATTTACAGAAGAGGATGTTACGAATCAGGTGATTAATGGGTCATTCGCGTCGGGATCATCAGAACATCAACCGTTTGATTTCCCTGGGCTCCGTAGTGATATTGAAGCCATCGAGCACAGTATATTCGGGAGCATGAAGGGGTTCTTTGAAGCAGCTGAAGAGATTAAGAATGGTTTCTTTGGTTCTCTCAGAGATCAACCCCTATTCAACAGAGAGTCTTCTTCCTCTCCATCAATGAGACGAGGAATACCCATCGAAGATCATGAGCCAGGGCTCTTCTCTAAACCGAACGAGCCCGATTCTGGTCACGTAGACCTATCTGGATTGGCCAGGGATGTTTGA

Protein sequence

MGWVWRDDAGELDSPADDNNSSPWSSGDRCSTRKVVKSQCKTEEVEPGKFVRKCERTEEILRDCIGRPVEVIQSNKEFTEEDVTNQVINGSFASGSSEHQPFDFPGLRSDIEAIEHSIFGSMKGFFEAAEEIKNGFFGSLRDQPLFNRESSSSPSMRRGIPIEDHEPGLFSKPNEPDSGHVDLSGLARDV

Homology

[Close]

BLAST of Lag0026772 vs. NCBI nr
Match: XP_038905970.1 (fra a 1-associated protein [Benincasa hispida])

HSP 1 Score: 332.0 bits (850), Expect = 3.3e-87
Identity = 166/194 (85.57%), Postives = 174/194 (89.69%), Query Frame = 0


Query: 1   MGWVWRDDAGELDSPADD----NNSSPWSSGDRCSTRKVVKSQCKTEEVEPGKFVRKCER 60
           MGWVWRDD GELDS A D    NNS+  S  DRCSTRKVVKSQCKTEEVEPGKFVRKCER
Sbjct: 1   MGWVWRDDTGELDSSAVDAAKINNSAAPSFSDRCSTRKVVKSQCKTEEVEPGKFVRKCER 60

Query: 61  TEEILRDCIGRPVEVIQSNKEFTEEDVTNQVINGSFASGSSEHQPFDFPGLRSDIEAIEH 120
           TEEILRDCIGRPVEVIQSNKEFTEEDVT+Q++N SF+ GSSEH+PFDFPGLRSDI+AIE 
Sbjct: 61  TEEILRDCIGRPVEVIQSNKEFTEEDVTDQMVNRSFSPGSSEHRPFDFPGLRSDIDAIEQ 120

Query: 121 SIFGSMKGFFEAAEEIKNGFFGSLRDQPLFNRESSSSPSMRRGIPIEDHEPGLFSKPNEP 180
           S+FGSMKGFFEAAEEIKNGFFGSLRD PLFNRESSSSPSMRRGIPIEDHEP  FS   EP
Sbjct: 121 SLFGSMKGFFEAAEEIKNGFFGSLRDPPLFNRESSSSPSMRRGIPIEDHEPAFFSNQKEP 180

Query: 181 DSGHVDLSGLARDV 191
           DSGHVDLSGLARDV
Sbjct: 181 DSGHVDLSGLARDV 194

[Close]

BLAST of Lag0026772 vs. NCBI nr
Match: XP_008442953.1 (PREDICTED: uncharacterized protein LOC103486704 [Cucumis melo])

HSP 1 Score: 314.3 bits (804), Expect = 7.1e-82
Identity = 157/194 (80.93%), Postives = 169/194 (87.11%), Query Frame = 0


Query: 1   MGWVWRDDAGELDSPADD----NNSSPWSSGDRCSTRKVVKSQCKTEEVEPGKFVRKCER 60
           MGWVW DD G+LDS A D    +NS+  SS DRCSTR VV+S CKTEEVEPGKFVRKCER
Sbjct: 1   MGWVWIDDTGDLDSSAVDGAKFDNSTYPSSSDRCSTRNVVRSHCKTEEVEPGKFVRKCER 60

Query: 61  TEEILRDCIGRPVEVIQSNKEFTEEDVTNQVINGSFASGSSEHQPFDFPGLRSDIEAIEH 120
           TEEILRDCIGRP EVIQSNKEFTEEDVT+Q++N SF  GSSEH+PFDFPGLRSDI+AIE 
Sbjct: 61  TEEILRDCIGRPTEVIQSNKEFTEEDVTDQMVNRSFPLGSSEHRPFDFPGLRSDIDAIEQ 120

Query: 121 SIFGSMKGFFEAAEEIKNGFFGSLRDQPLFNRESSSSPSMRRGIPIEDHEPGLFSKPNEP 180
           S+FGSMKGFFEAAEEIKNGFFGSLRD PLFNR+SSS  SMRRGIPIEDH+P  FS P EP
Sbjct: 121 SLFGSMKGFFEAAEEIKNGFFGSLRDPPLFNRDSSSPGSMRRGIPIEDHDPEFFSNPKEP 180

Query: 181 DSGHVDLSGLARDV 191
           DSGHVDLSGLARDV
Sbjct: 181 DSGHVDLSGLARDV 194

[Close]

BLAST of Lag0026772 vs. NCBI nr
Match: XP_022151462.1 (uncharacterized protein LOC111019393 [Momordica charantia])

HSP 1 Score: 305.4 bits (781), Expect = 3.3e-79
Identity = 155/190 (81.58%), Postives = 166/190 (87.37%), Query Frame = 0


Query: 1   MGWVWRDDAGELDSPADDNNSSPWSSGDRCSTRKVVKSQCKTEEVEPGKFVRKCERTEEI 60
           MGWVWRD+ GE D  A D+     SSGDRCSTRKVVKSQC+TEEVEPGKFVRKCERTEEI
Sbjct: 1   MGWVWRDEPGESDLLAGDSGG---SSGDRCSTRKVVKSQCRTEEVEPGKFVRKCERTEEI 60

Query: 61  LRDCIGRPVEVIQSNKEFTEEDVTNQVINGSFASGSSEHQPFDFPGLRSDIEAIEHSIFG 120
           LRDC+GRPVEVIQSNKEFTEEDV +QV+N SF+SG+S HQPF FPGLRSDIEAIE ++FG
Sbjct: 61  LRDCVGRPVEVIQSNKEFTEEDVIDQVVNRSFSSGTSVHQPFGFPGLRSDIEAIERNLFG 120

Query: 121 SMKGFFEAAEEIKNGFFGSLRDQPLFNRESSSSPSMRRGIPIEDHEPGLFSKPNEPDSGH 180
           SMKGFFEAAEEIKNGFFG LRD   F  E SSSPSMRRGIPIEDHE  +FSKPNEPDSGH
Sbjct: 121 SMKGFFEAAEEIKNGFFGVLRDPHQF-IEESSSPSMRRGIPIEDHEQRIFSKPNEPDSGH 180

Query: 181 VDLSGLARDV 191
           VDLSGLARDV
Sbjct: 181 VDLSGLARDV 186

[Close]

BLAST of Lag0026772 vs. NCBI nr
Match: XP_023539788.1 (uncharacterized protein LOC111800367 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 297.4 bits (760), Expect = 9.0e-77
Identity = 154/195 (78.97%), Postives = 165/195 (84.62%), Query Frame = 0


Query: 1   MGWVWRDDAGELDSPADD----NNSSPWSSGDRCSTRKVVKSQCKTEEVEPGKFVRKCER 60
           MG VWR  +GELDSPA D    NN S WSSGDRCSTRKVVKSQCKTEEVEPGKFVRKCER
Sbjct: 1   MGGVWRGASGELDSPAGDGVTSNNPSTWSSGDRCSTRKVVKSQCKTEEVEPGKFVRKCER 60

Query: 61  TEEILRDCIGRPVEVIQSNKEFTEEDVTNQVING-SFASGSSEHQPFDFPGLRSDIEAIE 120
           TEEILRDCIGRPVEVIQSN+EFTEEDVTN+V+N  SF+SGSSE+QPF+FPGLRSDIEAIE
Sbjct: 61  TEEILRDCIGRPVEVIQSNREFTEEDVTNEVVNNRSFSSGSSEYQPFNFPGLRSDIEAIE 120

Query: 121 HSIFGSMKGFFEAAEEIKNGFFGSLRDQPLFNRESSSSPSMRRGIPIEDHEPGLFSKPNE 180
           HS+FGSMKGFF+AAEEI+NGFFGS RD PLFNRE SSSPSMR+               NE
Sbjct: 121 HSLFGSMKGFFDAAEEIRNGFFGSFRDPPLFNREPSSSPSMRQ---------------NE 180

Query: 181 PDSGHVDLSGLARDV 191
           PDSGHVDLSGLARDV
Sbjct: 181 PDSGHVDLSGLARDV 180

[Close]

BLAST of Lag0026772 vs. NCBI nr
Match: XP_023005676.1 (uncharacterized protein LOC111498606 [Cucurbita maxima])

HSP 1 Score: 295.8 bits (756), Expect = 2.6e-76
Identity = 153/195 (78.46%), Postives = 165/195 (84.62%), Query Frame = 0


Query: 1   MGWVWRDDAGELDSPADD----NNSSPWSSGDRCSTRKVVKSQCKTEEVEPGKFVRKCER 60
           MG VWR  +GELDSPA D    NN S WSSGDRCSTRKVVKSQCKTEEVEPGKFVRKCER
Sbjct: 1   MGGVWRGVSGELDSPAGDGVTSNNPSTWSSGDRCSTRKVVKSQCKTEEVEPGKFVRKCER 60

Query: 61  TEEILRDCIGRPVEVIQSNKEFTEEDVTNQVING-SFASGSSEHQPFDFPGLRSDIEAIE 120
           TEEILRDCIGRPVEVIQSN+EFTEEDVTN+V+N  SF+SGSSE+QPF+FPGLRSDIEAIE
Sbjct: 61  TEEILRDCIGRPVEVIQSNREFTEEDVTNEVVNNRSFSSGSSEYQPFNFPGLRSDIEAIE 120

Query: 121 HSIFGSMKGFFEAAEEIKNGFFGSLRDQPLFNRESSSSPSMRRGIPIEDHEPGLFSKPNE 180
           HS+FGSMKGFF+AAEEI+NGFFGS RD P+FNRE SSSPSMR+               NE
Sbjct: 121 HSLFGSMKGFFDAAEEIRNGFFGSFRDPPVFNREPSSSPSMRQ---------------NE 180

Query: 181 PDSGHVDLSGLARDV 191
           PDSGHVDLSGLARDV
Sbjct: 181 PDSGHVDLSGLARDV 180

[Close]

BLAST of Lag0026772 vs. ExPASy Swiss-Prot
Match: W5X2N3 (Fra a 1-associated protein OS=Fragaria ananassa OX=3747 GN=AP PE=1 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.2e-55
Identity = 113/195 (57.95%), Postives = 144/195 (73.85%), Query Frame = 0


Query: 1   MGWVWRDD---AGELDSPADDNNSSPWSSGDRCSTRKVVKSQCKTEEVEPGKFVRKCERT 60
           MGWVW+DD    G ++  A D   SP   GDRCSTRKVV++QCKTEEVEPGKF+RKCE+T
Sbjct: 1   MGWVWKDDDEQGGHVNPSAAD--ISPRLDGDRCSTRKVVRTQCKTEEVEPGKFIRKCEKT 60

Query: 61  EEILRDCIGRPVEVIQSNKEFTEEDVTNQVINGSFASGSSEHQPFDFPGLRSDIEAIEHS 120
           EE+LRDC+GRP+EV+QSNKE+TE+DVT+QV+ GS + GS+++  F+FPGL+ DI+ IEH+
Sbjct: 61  EEVLRDCVGRPIEVVQSNKEYTEDDVTDQVMKGSVSFGSADNGAFNFPGLQHDIDEIEHN 120

Query: 121 IFGSMKGFFEAAEEIKNGFFGSLRDQPLFNR-ESSSSPSMRRGIPIED-HEPGLFSKPNE 180
             G +  FFEAAE++KNGFF S     +F+   S+S PS RR IPI+   +   F K   
Sbjct: 121 FLGGLSRFFEAAEDMKNGFFSSFGIPHIFDEGPSTSLPSPRREIPIDSPRQLEAFQKAYG 180

Query: 181 PDSGHVDLSGLARDV 191
             SG VDLSGLARDV
Sbjct: 181 TKSGEVDLSGLARDV 193

The following BLAST results are available for this feature:

BLAST of Lag0026772 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905970.1	3.3e-87	85.57	fra a 1-associated protein [Benincasa hispida]	[more]
XP_008442953.1	7.1e-82	80.93	PREDICTED: uncharacterized protein LOC103486704 [Cucumis melo]	[more]
XP_022151462.1	3.3e-79	81.58	uncharacterized protein LOC111019393 [Momordica charantia]	[more]
XP_023539788.1	9.0e-77	78.97	uncharacterized protein LOC111800367 [Cucurbita pepo subsp. pepo]	[more]
XP_023005676.1	2.6e-76	78.46	uncharacterized protein LOC111498606 [Cucurbita maxima]	[more]

BLAST of Lag0026772 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
W5X2N3	1.2e-55	57.95	Fra a 1-associated protein OS=Fragaria ananassa OX=3747 GN=AP PE=1 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..190
None	No IPR available	PANTHER	PTHR35722	MAL D 1-ASSOCIATED PROTEIN	coord: 1..190

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0026772.1	Lag0026772.1	mRNA